Wall clock time and date at job start Wed Apr 1 2020 01:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46622 * 2 1 4 4 C 1.34780 * 119.99918 * 277.22679 * 3 2 1 5 5 O 1.21482 * 120.00173 * 176.43098 * 4 3 2 6 6 C 1.48441 * 119.99809 * 356.42843 * 4 3 2 7 7 N 1.33489 * 119.22145 * 6.83422 * 6 4 3 8 8 N 1.28917 * 122.02353 * 179.73707 * 7 6 4 9 9 C 1.33810 * 119.74337 * 0.52424 * 8 7 6 10 10 C 1.40337 * 121.77797 * 179.69832 * 9 8 7 11 11 C 1.36186 * 119.62453 * 180.02562 * 10 9 8 12 12 C 1.39448 * 121.07288 * 359.97438 * 11 10 9 13 13 C 1.36138 * 121.01202 * 0.02562 * 12 11 10 14 14 C 1.40511 * 119.56123 * 359.97215 * 13 12 11 15 15 N 1.32059 * 119.21759 * 187.10124 * 6 4 3 16 16 C 1.46500 * 120.00406 * 97.23049 * 3 2 1 17 17 H 1.09006 * 110.88219 * 3.87674 * 16 3 2 18 18 C 1.55149 * 111.00211 * 240.00019 * 16 3 2 19 19 C 1.54328 * 102.94265 * 206.38179 * 18 16 3 20 20 N 1.47026 * 107.26766 * 22.19187 * 19 18 16 21 21 C 1.36937 * 125.64877 * 181.02553 * 20 19 18 22 22 H 1.07998 * 120.00154 * 185.03745 * 21 20 19 23 23 C 1.38812 * 119.99882 * 4.75443 * 21 20 19 24 24 N 1.31621 * 120.00165 * 355.14335 * 23 21 20 25 25 Si 1.86801 * 120.00169 * 175.13949 * 23 21 20 26 26 H 1.48497 * 109.46889 * 95.00002 * 25 23 21 27 27 H 1.48498 * 109.47365 * 215.00395 * 25 23 21 28 28 H 1.48502 * 109.46801 * 335.00497 * 25 23 21 29 29 C 1.47424 * 108.70370 * 1.28821 * 20 19 18 30 30 H 1.09007 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47186 * 299.99873 * 1 2 3 32 32 H 1.08999 * 109.47041 * 60.00267 * 1 2 3 33 33 H 1.08990 * 109.47190 * 240.00314 * 2 1 3 34 34 H 1.09003 * 109.47199 * 119.99268 * 2 1 3 35 35 H 1.07999 * 120.18686 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.46395 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.49536 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.21851 * 179.97438 * 13 12 11 39 39 H 1.09002 * 110.72843 * 88.02266 * 18 16 3 40 40 H 1.09005 * 110.87396 * 324.81428 * 18 16 3 41 41 H 1.08993 * 109.88331 * 262.77426 * 19 18 16 42 42 H 1.09002 * 109.88490 * 141.60903 * 19 18 16 43 43 H 0.96993 * 120.00126 * 179.97438 * 24 23 21 44 44 H 1.08995 * 110.36728 * 94.48388 * 29 20 19 45 45 H 1.08998 * 110.36808 * 216.80816 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1044 2.0656 -1.1580 5 8 2.4472 3.2310 -1.1508 6 6 1.7803 1.3952 -2.4421 7 7 1.2745 0.1600 -2.4229 8 7 0.9691 -0.4706 -3.5050 9 6 1.1688 0.1132 -4.6924 10 6 0.8576 -0.5362 -5.8969 11 6 1.0792 0.0990 -7.0810 12 6 1.6110 1.3876 -7.1179 13 6 1.9254 2.0498 -5.9708 14 6 1.7108 1.4269 -4.7297 15 7 2.0042 2.0328 -3.5767 16 6 2.4129 2.0188 1.2586 17 1 2.3491 1.3141 2.0878 18 6 1.5555 3.2820 1.5349 19 6 2.4844 4.1445 2.4151 20 7 3.8626 3.6993 2.1621 21 6 4.9863 4.2002 2.7635 22 1 5.9629 3.8620 2.4502 23 6 4.8702 5.1471 3.7719 24 7 3.6881 5.6341 4.0846 25 14 6.3918 5.7302 4.6853 26 1 6.8978 6.9776 4.0583 27 1 6.0460 5.9947 6.1050 28 1 7.4413 4.6817 4.6185 29 6 3.8351 2.6286 1.1491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.4447 -1.5341 -5.8849 36 1 0.8392 -0.4034 -8.0064 37 1 1.7768 1.8673 -8.0712 38 1 2.3371 3.0473 -6.0143 39 1 0.6459 3.0201 2.0755 40 1 1.3150 3.7990 0.6059 41 1 2.2360 4.0022 3.4667 42 1 2.3792 5.1956 2.1462 43 1 3.6070 6.2954 4.7894 44 1 3.9970 3.0434 0.1542 45 1 4.5891 1.8743 1.3738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033902263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:45 Heat of formation + Delta-G solvation = 131.463662 kcal Electronic energy + Delta-G solvation = -29685.000968 eV Core-core repulsion = 25706.082067 eV Total energy + Delta-G solvation = -3978.918901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.40848 -40.08763 -38.43540 -36.86536 -35.76562 -35.32700 -32.70716 -32.00001 -31.35031 -30.23445 -28.97775 -27.56455 -26.50145 -25.74049 -24.30673 -23.45011 -23.01340 -21.51234 -20.27796 -19.97791 -19.58690 -18.57548 -17.14993 -16.83692 -16.64744 -16.30110 -15.66477 -15.45379 -14.91392 -14.71712 -14.56970 -14.45112 -14.12663 -13.79772 -13.13522 -13.07609 -12.98233 -12.81312 -12.68084 -12.46108 -12.36536 -12.18455 -11.94776 -11.88270 -11.66372 -11.53904 -10.94416 -10.85389 -10.74232 -10.63390 -10.34056 -10.02070 -9.97640 -9.82677 -9.69805 -9.57716 -9.25475 -9.22063 -8.50687 -8.32022 -6.67617 -5.60660 -2.92744 -0.68338 -0.26852 1.19666 1.94438 2.56361 2.88765 3.13925 3.45742 3.47305 3.51621 3.51934 3.54214 3.68875 3.98950 4.18676 4.43481 4.54568 4.60929 4.65976 4.98248 5.12292 5.22805 5.34329 5.36794 5.42337 5.49994 5.55851 5.57964 5.66788 5.69331 5.78880 5.88399 5.94418 5.97303 6.05397 6.29158 6.34538 6.49148 6.55217 6.64880 6.70624 6.78194 7.22089 7.49177 7.68014 7.77988 7.83773 7.94170 8.22017 8.37531 9.33021 9.93403 10.60736 11.51254 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002645 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.780979 B =10581.700308 C =11400.720830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.095 3.905 3 N -0.579 5.579 4 C 0.576 3.424 5 O -0.476 6.476 6 C 0.223 3.777 7 N -0.224 5.224 8 N -0.151 5.151 9 C 0.018 3.982 10 C -0.068 4.068 11 C -0.092 4.092 12 C -0.074 4.074 13 C -0.085 4.085 14 C 0.132 3.868 15 N -0.394 5.394 16 C 0.131 3.869 17 H 0.100 0.900 18 C -0.154 4.154 19 C 0.184 3.816 20 N -0.601 5.601 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.124 3.876 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -16.146 -22.930 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.028 4.028 3 N -0.312 5.312 4 C 0.357 3.643 5 O -0.345 6.345 6 C -0.048 4.048 7 N -0.085 5.085 8 N -0.014 5.014 9 C -0.115 4.115 10 C -0.090 4.090 11 C -0.113 4.113 12 C -0.097 4.097 13 C -0.104 4.104 14 C -0.007 4.007 15 N -0.116 5.116 16 C 0.029 3.971 17 H 0.118 0.882 18 C -0.194 4.194 19 C 0.059 3.941 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.741 3.259 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.003 4.003 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.266 -15.638 -21.789 28.375 hybrid contribution 0.771 0.671 -0.299 1.065 sum -8.495 -14.966 -22.088 28.000 Atomic orbital electron populations 1.22036 0.95678 1.01945 1.01445 1.22155 0.95005 0.81664 1.03971 1.47852 1.62938 1.14351 1.06086 1.17067 0.80108 0.85953 0.81195 1.90888 1.43923 1.14610 1.85088 1.24772 0.94865 0.89980 0.95216 1.74577 1.08205 1.06655 1.19055 1.74529 1.06296 1.25938 0.94607 1.20972 0.99886 0.94456 0.96179 1.20811 0.98254 1.00674 0.89232 1.21236 0.96721 0.94771 0.98560 1.21259 0.95110 0.94381 0.98926 1.20977 0.99195 1.01294 0.88975 1.19789 0.95324 0.91667 0.93922 1.69159 1.11347 1.33848 0.97216 1.22622 0.97217 0.94678 0.82627 0.88182 1.23260 0.98265 0.96376 1.01451 1.21085 0.81767 0.95315 0.95930 1.44326 1.03232 1.39523 1.45707 1.19049 0.85094 1.18571 1.12360 0.90547 1.24805 0.96882 0.99540 0.99346 1.69979 1.21106 1.32560 1.33309 0.86110 0.82004 0.78509 0.79238 1.21761 1.21714 1.20697 1.21936 0.92373 0.91264 0.94722 0.91561 0.92693 0.93150 0.87592 0.90334 0.83218 0.83800 0.83698 0.83008 0.92427 0.90864 0.93301 0.94203 0.93865 0.93812 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.57 37.16 0.36 -1.39 16 2 C 0.10 1.19 5.73 -4.04 -0.02 1.17 16 3 N -0.58 -9.48 2.58 -164.42 -0.42 -9.90 16 4 C 0.58 10.48 6.92 -12.05 -0.08 10.40 16 5 O -0.48 -10.49 12.91 5.38 0.07 -10.42 16 6 C 0.22 3.53 7.43 -156.56 -1.16 2.37 16 7 N -0.22 -3.03 5.50 32.10 0.18 -2.85 16 8 N -0.15 -1.81 11.68 32.28 0.38 -1.44 16 9 C 0.02 0.19 6.68 -84.71 -0.57 -0.38 16 10 C -0.07 -0.43 10.00 -39.53 -0.40 -0.82 16 11 C -0.09 -0.37 9.95 -39.87 -0.40 -0.77 16 12 C -0.07 -0.35 9.95 -39.89 -0.40 -0.74 16 13 C -0.08 -0.69 10.01 -39.48 -0.40 -1.08 16 14 C 0.13 1.56 6.61 -84.77 -0.56 1.00 16 15 N -0.39 -6.09 10.23 -8.99 -0.09 -6.18 16 16 C 0.13 2.49 3.57 -65.67 -0.23 2.26 16 17 H 0.10 1.73 7.77 -51.93 -0.40 1.33 16 18 C -0.15 -3.23 6.32 -24.90 -0.16 -3.39 16 19 C 0.18 4.81 5.38 -3.06 -0.02 4.79 16 20 N -0.60 -16.49 3.39 -169.94 -0.58 -17.07 16 21 C -0.22 -6.54 10.27 -15.06 -0.15 -6.70 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 24 N -0.92 -28.21 10.34 55.49 0.57 -27.64 16 25 Si 0.91 22.96 29.56 -169.99 -5.02 17.94 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.12 2.85 6.58 -2.41 -0.02 2.84 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.64 6.78 -51.93 -0.35 0.29 16 33 H 0.11 1.31 5.19 -55.33 -0.29 1.03 16 34 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.11 8.06 -52.49 -0.42 -0.31 16 37 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.63 6.14 -51.93 -0.32 1.31 16 41 H 0.05 1.36 7.25 -51.93 -0.38 0.99 16 42 H 0.04 1.17 7.64 -51.93 -0.40 0.77 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 1.09 5.66 -51.93 -0.29 0.80 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -36.17 363.10 -9.51 -45.68 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.76 Total: -2.75 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -4.30 Total: 9.16 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.03 Total: -65.08 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.17 -9.51 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033902263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.144 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds