Wall clock time and date at job start Wed Apr 1 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46622 * 2 1 4 4 C 1.34780 * 119.99918 * 277.22679 * 3 2 1 5 5 O 1.21482 * 120.00173 * 176.43098 * 4 3 2 6 6 C 1.48441 * 119.99809 * 356.42843 * 4 3 2 7 7 N 1.33489 * 119.22145 * 6.83422 * 6 4 3 8 8 N 1.28917 * 122.02353 * 179.73707 * 7 6 4 9 9 C 1.33810 * 119.74337 * 0.52424 * 8 7 6 10 10 C 1.40337 * 121.77797 * 179.69832 * 9 8 7 11 11 C 1.36186 * 119.62453 * 180.02562 * 10 9 8 12 12 C 1.39448 * 121.07288 * 359.97438 * 11 10 9 13 13 C 1.36138 * 121.01202 * 0.02562 * 12 11 10 14 14 C 1.40511 * 119.56123 * 359.97215 * 13 12 11 15 15 N 1.32059 * 119.21759 * 187.10124 * 6 4 3 16 16 C 1.46500 * 120.00406 * 97.23049 * 3 2 1 17 17 H 1.09006 * 110.88219 * 3.87674 * 16 3 2 18 18 C 1.55149 * 111.00211 * 240.00019 * 16 3 2 19 19 C 1.54328 * 102.94265 * 206.38179 * 18 16 3 20 20 N 1.47026 * 107.26766 * 22.19187 * 19 18 16 21 21 C 1.36937 * 125.64877 * 181.02553 * 20 19 18 22 22 H 1.07998 * 120.00154 * 185.03745 * 21 20 19 23 23 C 1.38812 * 119.99882 * 4.75443 * 21 20 19 24 24 N 1.31621 * 120.00165 * 355.14335 * 23 21 20 25 25 Si 1.86801 * 120.00169 * 175.13949 * 23 21 20 26 26 H 1.48497 * 109.46889 * 95.00002 * 25 23 21 27 27 H 1.48498 * 109.47365 * 215.00395 * 25 23 21 28 28 H 1.48502 * 109.46801 * 335.00497 * 25 23 21 29 29 C 1.47424 * 108.70370 * 1.28821 * 20 19 18 30 30 H 1.09007 * 109.46817 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47186 * 299.99873 * 1 2 3 32 32 H 1.08999 * 109.47041 * 60.00267 * 1 2 3 33 33 H 1.08990 * 109.47190 * 240.00314 * 2 1 3 34 34 H 1.09003 * 109.47199 * 119.99268 * 2 1 3 35 35 H 1.07999 * 120.18686 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.46395 * 179.97438 * 11 10 9 37 37 H 1.07996 * 119.49536 * 179.97438 * 12 11 10 38 38 H 1.08000 * 120.21851 * 179.97438 * 13 12 11 39 39 H 1.09002 * 110.72843 * 88.02266 * 18 16 3 40 40 H 1.09005 * 110.87396 * 324.81428 * 18 16 3 41 41 H 1.08993 * 109.88331 * 262.77426 * 19 18 16 42 42 H 1.09002 * 109.88490 * 141.60903 * 19 18 16 43 43 H 0.96993 * 120.00126 * 179.97438 * 24 23 21 44 44 H 1.08995 * 110.36728 * 94.48388 * 29 20 19 45 45 H 1.08998 * 110.36808 * 216.80816 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1044 2.0656 -1.1580 5 8 2.4472 3.2310 -1.1508 6 6 1.7803 1.3952 -2.4421 7 7 1.2745 0.1600 -2.4229 8 7 0.9691 -0.4706 -3.5050 9 6 1.1688 0.1132 -4.6924 10 6 0.8576 -0.5362 -5.8969 11 6 1.0792 0.0990 -7.0810 12 6 1.6110 1.3876 -7.1179 13 6 1.9254 2.0498 -5.9708 14 6 1.7108 1.4269 -4.7297 15 7 2.0042 2.0328 -3.5767 16 6 2.4129 2.0188 1.2586 17 1 2.3491 1.3141 2.0878 18 6 1.5555 3.2820 1.5349 19 6 2.4844 4.1445 2.4151 20 7 3.8626 3.6993 2.1621 21 6 4.9863 4.2002 2.7635 22 1 5.9629 3.8620 2.4502 23 6 4.8702 5.1471 3.7719 24 7 3.6881 5.6341 4.0846 25 14 6.3918 5.7302 4.6853 26 1 6.8978 6.9776 4.0583 27 1 6.0460 5.9947 6.1050 28 1 7.4413 4.6817 4.6185 29 6 3.8351 2.6286 1.1491 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.4447 -1.5341 -5.8849 36 1 0.8392 -0.4034 -8.0064 37 1 1.7768 1.8673 -8.0712 38 1 2.3371 3.0473 -6.0143 39 1 0.6459 3.0201 2.0755 40 1 1.3150 3.7990 0.6059 41 1 2.2360 4.0022 3.4667 42 1 2.3792 5.1956 2.1462 43 1 3.6070 6.2954 4.7894 44 1 3.9970 3.0434 0.1542 45 1 4.5891 1.8743 1.3738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033902263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:42 Heat of formation + Delta-G solvation = 119.921815 kcal Electronic energy + Delta-G solvation = -29685.501460 eV Core-core repulsion = 25706.082067 eV Total energy + Delta-G solvation = -3979.419393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -42.00433 -40.70884 -39.81440 -37.41281 -36.99071 -36.32022 -33.80532 -33.67365 -31.49837 -30.99102 -30.14117 -29.80177 -28.56486 -25.99547 -24.86584 -24.16197 -23.80524 -23.11279 -21.84594 -21.04238 -20.53159 -19.16755 -18.68825 -18.34327 -17.90856 -17.20087 -16.69944 -16.57225 -16.21198 -15.87194 -15.61386 -15.12394 -14.92328 -14.73033 -14.68102 -14.59428 -14.42831 -14.23276 -14.15029 -13.83765 -13.64030 -13.36831 -13.16322 -12.72012 -12.58972 -12.49145 -12.29217 -12.18065 -12.03373 -11.88511 -11.72397 -11.51142 -11.34375 -11.04909 -10.91480 -10.74419 -10.73338 -10.10665 -9.59524 -9.24448 -8.34342 -8.27953 -4.87479 -1.63039 0.39425 0.75728 0.77506 1.06380 1.64947 1.67921 1.88061 2.00865 2.04035 2.07064 2.59610 2.94423 3.00592 3.13029 3.47937 3.65345 3.78800 3.91501 3.94705 4.07876 4.24848 4.33531 4.37882 4.40448 4.53969 4.57154 4.66582 4.67612 4.72826 4.77584 4.81787 4.89955 5.00052 5.00635 5.11271 5.13214 5.41702 5.47208 5.55645 5.58391 5.93023 6.01514 6.09401 6.18493 6.42989 6.46762 6.71114 6.80302 7.00101 7.42130 7.57916 8.37021 9.54025 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020863 B = 0.002645 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.780979 B =10581.700308 C =11400.720830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.107 3.893 3 N -0.589 5.589 4 C 0.611 3.389 5 O -0.576 6.576 6 C 0.020 3.980 7 N -0.274 5.274 8 N -0.548 5.548 9 C 0.044 3.956 10 C -0.296 4.296 11 C -0.228 4.228 12 C -0.124 4.124 13 C -0.377 4.377 14 C 0.182 3.818 15 N -0.731 5.731 16 C 0.132 3.868 17 H 0.165 0.835 18 C -0.169 4.169 19 C 0.090 3.910 20 N -0.396 5.396 21 C 0.349 3.651 22 H 0.272 0.728 23 C -0.082 4.082 24 N -0.549 5.549 25 Si 1.047 2.953 26 H -0.256 1.256 27 H -0.253 1.253 28 H -0.206 1.206 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.001 0.999 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.159 0.841 42 H 0.121 0.879 43 H 0.378 0.622 44 H 0.103 0.897 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.033 17.740 52.126 58.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 N -0.322 5.322 4 C 0.402 3.598 5 O -0.456 6.456 6 C -0.247 4.247 7 N -0.117 5.117 8 N -0.405 5.405 9 C -0.072 4.072 10 C -0.331 4.331 11 C -0.251 4.251 12 C -0.144 4.144 13 C -0.414 4.414 14 C 0.046 3.954 15 N -0.470 5.470 16 C 0.029 3.971 17 H 0.182 0.818 18 C -0.208 4.208 19 C -0.030 4.030 20 N -0.063 5.063 21 C 0.170 3.830 22 H 0.287 0.713 23 C -0.316 4.316 24 N -0.175 5.175 25 Si 0.857 3.143 26 H -0.180 1.180 27 H -0.176 1.176 28 H -0.126 1.126 29 C -0.092 4.092 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.020 0.980 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.073 0.927 41 H 0.176 0.824 42 H 0.138 0.862 43 H 0.197 0.803 44 H 0.121 0.879 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 19.466 17.752 53.300 59.456 hybrid contribution -0.637 0.760 -1.971 2.207 sum 18.828 18.512 51.329 57.722 Atomic orbital electron populations 1.21803 0.97028 1.01258 0.99282 1.22038 0.94352 0.80809 1.04313 1.47467 1.65319 1.14952 1.04464 1.17221 0.75955 0.84449 0.82199 1.90377 1.51020 1.16894 1.87339 1.22984 1.13028 0.94085 0.94641 1.72525 1.09736 1.06527 1.22909 1.73821 1.43411 1.29687 0.93597 1.20840 0.96106 0.93889 0.96386 1.19003 1.22540 0.99961 0.91561 1.19571 1.13323 0.96861 0.95318 1.19816 1.03913 0.95247 0.95443 1.18900 1.29907 1.01094 0.91453 1.19731 0.90321 0.90987 0.94407 1.68648 1.44441 1.37765 0.96181 1.22615 0.91653 0.95862 0.87012 0.81792 1.23379 1.00303 0.96117 1.00977 1.23415 0.75764 1.00623 1.03221 1.49710 1.10369 1.22891 1.23334 1.26674 0.92831 0.82396 0.81144 0.71262 1.28835 1.06243 0.97242 0.99276 1.70014 1.26433 1.06573 1.14526 0.84001 0.71541 0.81711 0.77020 1.17987 1.17588 1.12634 1.24255 1.01935 0.90149 0.92843 0.92167 0.91040 0.97975 0.90484 0.86483 0.91619 0.88772 0.88415 0.92038 0.86724 0.92721 0.82423 0.86178 0.80259 0.87894 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.57 71.98 0.69 -4.52 16 2 C 0.11 3.83 5.73 86.38 0.49 4.32 16 3 N -0.59 -19.95 2.58 -792.42 -2.04 -21.99 16 4 C 0.61 31.90 6.92 86.96 0.60 32.50 16 5 O -0.58 -29.71 12.91 -3.66 -0.05 -29.76 16 6 C 0.02 1.44 7.43 137.46 1.02 2.47 16 7 N -0.27 -19.71 5.50 -52.34 -0.29 -19.99 16 8 N -0.55 -44.61 11.68 -51.80 -0.61 -45.21 16 9 C 0.04 3.78 6.68 40.33 0.27 4.05 16 10 C -0.30 -23.78 10.00 22.30 0.22 -23.55 16 11 C -0.23 -16.82 9.95 22.08 0.22 -16.60 16 12 C -0.12 -9.12 9.95 22.07 0.22 -8.90 16 13 C -0.38 -30.47 10.01 22.34 0.22 -30.25 16 14 C 0.18 15.60 6.61 40.41 0.27 15.86 16 15 N -0.73 -59.96 10.23 -182.36 -1.86 -61.83 16 16 C 0.13 1.80 3.57 46.46 0.17 1.96 16 17 H 0.16 0.49 7.77 -2.38 -0.02 0.47 16 18 C -0.17 -2.09 6.32 31.78 0.20 -1.88 16 19 C 0.09 -0.10 5.38 86.73 0.47 0.36 16 20 N -0.40 2.20 3.39 -691.56 -2.35 -0.15 16 21 C 0.35 -5.78 10.27 84.03 0.86 -4.92 16 22 H 0.27 -7.46 7.83 -2.91 -0.02 -7.48 16 23 C -0.08 1.34 5.48 84.86 0.47 1.81 16 24 N -0.55 6.69 10.34 21.65 0.22 6.92 16 25 Si 1.05 -17.04 29.56 68.60 2.03 -15.02 16 26 H -0.26 2.78 7.11 99.48 0.71 3.49 16 27 H -0.25 3.18 7.11 99.48 0.71 3.88 16 28 H -0.21 3.66 7.11 99.48 0.71 4.37 16 29 C 0.03 0.18 6.58 86.93 0.57 0.75 16 30 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.00 0.05 6.78 -2.39 -0.02 0.04 16 33 H 0.08 3.88 5.19 -6.79 -0.04 3.84 16 34 H 0.12 2.52 7.79 -2.39 -0.02 2.50 16 35 H 0.07 5.07 8.06 -2.91 -0.02 5.05 16 36 H 0.09 6.12 8.06 -2.91 -0.02 6.10 16 37 H 0.10 6.27 8.06 -2.91 -0.02 6.25 16 38 H 0.06 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.44 6.14 -2.38 -0.01 1.43 16 41 H 0.16 -1.29 7.25 -2.39 -0.02 -1.31 16 42 H 0.12 0.04 7.64 -2.39 -0.02 0.03 16 43 H 0.38 -5.59 8.31 -92.71 -0.77 -6.36 16 44 H 0.10 1.98 5.66 -2.39 -0.01 1.97 16 45 H 0.17 -0.57 8.14 -2.39 -0.02 -0.59 16 Total: -1.00 -182.91 363.10 3.02 -179.88 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 1.00 Total: 33.70 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 6.96 Total: -26.55 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -6.93 Total: -142.25 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: -17.04 SS G_CDS: 2.03 Total: -15.02 kcal Total: -182.91 3.02 -179.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033902263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 299.807 kcal (2) G-P(sol) polarization free energy of solvation -182.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -179.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds