Wall clock time and date at job start Wed Apr 1 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.34773 * 120.00003 * 86.65162 * 3 2 1 5 5 O 1.21481 * 119.99915 * 174.49456 * 4 3 2 6 6 C 1.48434 * 120.00170 * 354.50661 * 4 3 2 7 7 N 1.33492 * 119.21741 * 353.37554 * 6 4 3 8 8 N 1.28920 * 122.02196 * 179.69696 * 7 6 4 9 9 C 1.33817 * 119.74053 * 0.57302 * 8 7 6 10 10 C 1.40347 * 121.77757 * 179.73693 * 9 8 7 11 11 C 1.36184 * 119.62276 * 179.97438 * 10 9 8 12 12 C 1.39439 * 121.07436 * 359.97438 * 11 10 9 13 13 C 1.36141 * 121.01556 * 0.03855 * 12 11 10 14 14 C 1.40507 * 119.56003 * 359.96130 * 13 12 11 15 15 N 1.32061 * 119.22243 * 173.65186 * 6 4 3 16 16 C 1.46497 * 119.99891 * 266.93258 * 3 2 1 17 17 H 1.08997 * 110.64516 * 1.41406 * 16 3 2 18 18 C 1.55160 * 110.72031 * 124.74515 * 16 3 2 19 19 C 1.54915 * 101.58280 * 153.86601 * 18 16 3 20 20 N 1.47428 * 104.83005 * 322.99359 * 19 18 16 21 21 C 1.36941 * 125.64917 * 204.16456 * 20 19 18 22 22 H 1.07999 * 120.00182 * 179.97438 * 21 20 19 23 23 C 1.38810 * 119.99781 * 359.95765 * 21 20 19 24 24 N 1.31621 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99949 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47142 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47076 * 119.99952 * 25 23 21 28 28 H 1.48497 * 109.47173 * 239.99936 * 25 23 21 29 29 C 1.47027 * 108.70351 * 24.12492 * 20 19 18 30 30 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47329 * 300.00098 * 1 2 3 32 32 H 1.09004 * 109.46872 * 60.00348 * 1 2 3 33 33 H 1.08997 * 109.46975 * 240.00074 * 2 1 3 34 34 H 1.08998 * 109.46755 * 120.00076 * 2 1 3 35 35 H 1.07997 * 120.18244 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.46216 * 180.02562 * 11 10 9 37 37 H 1.08000 * 119.49812 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.22238 * 179.97438 * 13 12 11 39 39 H 1.08994 * 111.00948 * 271.94003 * 18 16 3 40 40 H 1.09002 * 111.00321 * 35.79718 * 18 16 3 41 41 H 1.09002 * 110.36556 * 204.15724 * 19 18 16 42 42 H 1.08995 * 110.36693 * 81.82844 * 19 18 16 43 43 H 0.96996 * 120.00302 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.88415 * 239.52402 * 29 20 19 45 45 H 1.09001 * 109.87532 * 118.36229 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1787 2.0392 1.1652 5 8 2.6772 3.1470 1.1735 6 6 1.7466 1.4103 2.4383 7 7 1.0815 0.2535 2.4008 8 7 0.6859 -0.3427 3.4732 9 6 0.9319 0.2076 4.6679 10 6 0.5160 -0.4015 5.8620 11 6 0.7904 0.1971 7.0541 12 6 1.4797 1.4080 7.1096 13 6 1.8990 2.0293 5.9731 14 6 1.6345 1.4422 4.7243 15 7 2.0244 2.0111 3.5811 16 6 2.3265 2.0491 -1.2669 17 1 2.1150 1.3911 -2.1097 18 6 1.5373 3.3791 -1.3925 19 6 2.4511 4.1946 -2.3411 20 7 3.8244 3.8348 -1.9437 21 6 4.9405 4.6023 -2.1452 22 1 5.9061 4.2483 -1.8153 23 6 4.8309 5.8351 -2.7737 24 7 3.6542 6.2666 -3.1755 25 14 6.3533 6.8823 -3.0479 26 1 7.5432 6.1769 -2.5078 27 1 6.5363 7.1182 -4.5026 28 1 6.1906 8.1839 -2.3520 29 6 3.7972 2.5160 -1.2944 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 -0.0177 -1.3399 5.8356 36 1 0.4695 -0.2740 7.9713 37 1 1.6840 1.8600 8.0690 38 1 2.4315 2.9670 6.0311 39 1 0.5584 3.2116 -1.8415 40 1 1.4423 3.8700 -0.4239 41 1 2.2838 5.2629 -2.2032 42 1 2.2699 3.9120 -3.3780 43 1 3.5776 7.1279 -3.6151 44 1 4.1799 2.5957 -0.2769 45 1 4.3999 1.8094 -1.8650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033902264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:50 Heat of formation + Delta-G solvation = 133.824410 kcal Electronic energy + Delta-G solvation = -29825.220824 eV Core-core repulsion = 25846.404293 eV Total energy + Delta-G solvation = -3978.816531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.37440 -40.05879 -38.40700 -36.84870 -35.73340 -35.28828 -32.69082 -31.97109 -31.32014 -30.19333 -28.96749 -27.55760 -26.47987 -25.69481 -24.31104 -23.40583 -22.97927 -21.49111 -20.21793 -20.02081 -19.55145 -18.45596 -17.19376 -16.82201 -16.60382 -16.27782 -15.64454 -15.40374 -14.88345 -14.72018 -14.58390 -14.41383 -14.10824 -13.78371 -13.12907 -13.02908 -12.98390 -12.91710 -12.67964 -12.42760 -12.34195 -12.01628 -11.92695 -11.72094 -11.42825 -11.37228 -10.95945 -10.91473 -10.79971 -10.71247 -10.48305 -9.99003 -9.91988 -9.75193 -9.69642 -9.47467 -9.25365 -9.18911 -8.52510 -8.31746 -6.66770 -5.51511 -2.91392 -0.65045 -0.23447 1.22727 1.98036 2.60162 2.93089 3.17757 3.48875 3.49209 3.53948 3.55924 3.56877 3.71439 4.02319 4.21456 4.46424 4.58322 4.62441 4.68820 5.01742 5.11341 5.25696 5.36936 5.38586 5.44303 5.47644 5.58381 5.62278 5.65658 5.69755 5.80349 5.85746 5.95458 6.00281 6.06225 6.33249 6.40005 6.51736 6.60002 6.65757 6.69380 6.81938 7.21937 7.48549 7.65006 7.76932 7.87398 7.99026 8.27296 8.50587 9.35897 9.96962 10.61878 11.52778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.002903 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.111106 B = 9641.494496 C =10844.361588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.583 5.583 4 C 0.573 3.427 5 O -0.465 6.465 6 C 0.222 3.778 7 N -0.222 5.222 8 N -0.152 5.152 9 C 0.018 3.982 10 C -0.068 4.068 11 C -0.092 4.092 12 C -0.075 4.075 13 C -0.084 4.084 14 C 0.131 3.869 15 N -0.393 5.393 16 C 0.136 3.864 17 H 0.097 0.903 18 C -0.156 4.156 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.211 4.211 22 H 0.076 0.924 23 C -0.015 4.015 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.130 3.870 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.250 0.750 44 H 0.039 0.961 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -17.250 20.183 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.317 5.317 4 C 0.354 3.646 5 O -0.333 6.333 6 C -0.050 4.050 7 N -0.083 5.083 8 N -0.015 5.015 9 C -0.115 4.115 10 C -0.090 4.090 11 C -0.113 4.113 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.008 4.008 15 N -0.115 5.115 16 C 0.033 3.967 17 H 0.115 0.885 18 C -0.195 4.195 19 C 0.033 3.967 20 N -0.322 5.322 21 C -0.340 4.340 22 H 0.094 0.906 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.003 3.997 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.030 0.970 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.833 -16.707 19.139 27.242 hybrid contribution 0.809 0.728 0.655 1.271 sum -9.024 -15.979 19.794 26.992 Atomic orbital electron populations 1.22083 0.95527 1.01937 1.01577 1.21890 0.95173 0.81545 1.03021 1.47854 1.64309 1.14262 1.05262 1.17073 0.80874 0.85535 0.81164 1.90961 1.39576 1.17937 1.84829 1.24784 0.94437 0.90702 0.95105 1.74620 1.07091 1.06955 1.19667 1.74527 1.09173 1.23162 0.94680 1.20977 0.99127 0.95238 0.96144 1.20802 0.98569 1.00347 0.89316 1.21226 0.96597 0.95031 0.98420 1.21251 0.94972 0.94539 0.99023 1.20982 0.99458 1.00961 0.88960 1.19784 0.94791 0.92230 0.94020 1.69159 1.14609 1.30453 0.97270 1.22344 0.97429 0.94382 0.82496 0.88519 1.23438 0.97985 0.95512 1.02559 1.21854 0.81594 1.01012 0.92241 1.44308 1.04386 1.15506 1.67979 1.19109 0.86161 0.97742 1.30949 0.90602 1.24757 0.97058 0.97816 1.01311 1.69801 1.21038 1.20552 1.45953 0.85997 0.81888 0.80366 0.77279 1.20620 1.21907 1.21847 1.21532 0.92342 0.88688 0.97150 0.91718 0.92414 0.92915 0.90467 0.88974 0.83255 0.83830 0.83721 0.83015 0.92518 0.90555 0.87485 0.97030 0.93948 0.94301 0.96290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.53 37.16 0.35 -1.39 16 2 C 0.11 1.34 5.66 -4.04 -0.02 1.32 16 3 N -0.58 -9.68 2.54 -164.92 -0.42 -10.10 16 4 C 0.57 10.77 6.78 -12.06 -0.08 10.69 16 5 O -0.46 -10.75 13.23 5.38 0.07 -10.68 16 6 C 0.22 3.61 7.44 -156.56 -1.17 2.45 16 7 N -0.22 -3.08 5.14 32.10 0.16 -2.91 16 8 N -0.15 -1.88 11.68 32.28 0.38 -1.51 16 9 C 0.02 0.19 6.68 -84.70 -0.57 -0.37 16 10 C -0.07 -0.46 10.00 -39.53 -0.40 -0.85 16 11 C -0.09 -0.40 9.95 -39.87 -0.40 -0.80 16 12 C -0.08 -0.38 9.95 -39.89 -0.40 -0.78 16 13 C -0.08 -0.72 10.01 -39.48 -0.40 -1.12 16 14 C 0.13 1.61 6.61 -84.78 -0.56 1.05 16 15 N -0.39 -6.31 10.22 -8.99 -0.09 -6.40 16 16 C 0.14 2.56 3.44 -66.10 -0.23 2.33 16 17 H 0.10 1.59 7.84 -51.93 -0.41 1.18 16 18 C -0.16 -3.29 6.40 -24.58 -0.16 -3.44 16 19 C 0.16 4.10 5.89 -2.52 -0.01 4.09 16 20 N -0.60 -16.44 3.40 -170.06 -0.58 -17.02 16 21 C -0.21 -6.28 10.27 -15.06 -0.15 -6.44 16 22 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 23 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 24 N -0.92 -28.25 10.09 55.49 0.56 -27.69 16 25 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 C 0.13 3.00 6.47 -3.06 -0.02 2.98 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 34 H 0.09 1.15 5.60 -51.93 -0.29 0.86 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.14 0.16 8.06 -52.49 -0.42 -0.27 16 37 H 0.15 0.28 8.06 -52.49 -0.42 -0.15 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.77 6.01 -51.93 -0.31 1.46 16 41 H 0.11 3.15 5.87 -51.93 -0.30 2.84 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.04 0.97 6.10 -51.93 -0.32 0.65 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -36.42 362.47 -9.49 -45.91 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.72 Total: -2.48 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -4.30 Total: 9.17 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: 0.01 Total: -65.63 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.42 -9.49 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033902264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.738 kcal (2) G-P(sol) polarization free energy of solvation -36.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds