Wall clock time and date at job start Wed Apr 1 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.34773 * 120.00003 * 86.65162 * 3 2 1 5 5 O 1.21481 * 119.99915 * 174.49456 * 4 3 2 6 6 C 1.48434 * 120.00170 * 354.50661 * 4 3 2 7 7 N 1.33492 * 119.21741 * 353.37554 * 6 4 3 8 8 N 1.28920 * 122.02196 * 179.69696 * 7 6 4 9 9 C 1.33817 * 119.74053 * 0.57302 * 8 7 6 10 10 C 1.40347 * 121.77757 * 179.73693 * 9 8 7 11 11 C 1.36184 * 119.62276 * 179.97438 * 10 9 8 12 12 C 1.39439 * 121.07436 * 359.97438 * 11 10 9 13 13 C 1.36141 * 121.01556 * 0.03855 * 12 11 10 14 14 C 1.40507 * 119.56003 * 359.96130 * 13 12 11 15 15 N 1.32061 * 119.22243 * 173.65186 * 6 4 3 16 16 C 1.46497 * 119.99891 * 266.93258 * 3 2 1 17 17 H 1.08997 * 110.64516 * 1.41406 * 16 3 2 18 18 C 1.55160 * 110.72031 * 124.74515 * 16 3 2 19 19 C 1.54915 * 101.58280 * 153.86601 * 18 16 3 20 20 N 1.47428 * 104.83005 * 322.99359 * 19 18 16 21 21 C 1.36941 * 125.64917 * 204.16456 * 20 19 18 22 22 H 1.07999 * 120.00182 * 179.97438 * 21 20 19 23 23 C 1.38810 * 119.99781 * 359.95765 * 21 20 19 24 24 N 1.31621 * 120.00252 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99949 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47142 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47076 * 119.99952 * 25 23 21 28 28 H 1.48497 * 109.47173 * 239.99936 * 25 23 21 29 29 C 1.47027 * 108.70351 * 24.12492 * 20 19 18 30 30 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47329 * 300.00098 * 1 2 3 32 32 H 1.09004 * 109.46872 * 60.00348 * 1 2 3 33 33 H 1.08997 * 109.46975 * 240.00074 * 2 1 3 34 34 H 1.08998 * 109.46755 * 120.00076 * 2 1 3 35 35 H 1.07997 * 120.18244 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.46216 * 180.02562 * 11 10 9 37 37 H 1.08000 * 119.49812 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.22238 * 179.97438 * 13 12 11 39 39 H 1.08994 * 111.00948 * 271.94003 * 18 16 3 40 40 H 1.09002 * 111.00321 * 35.79718 * 18 16 3 41 41 H 1.09002 * 110.36556 * 204.15724 * 19 18 16 42 42 H 1.08995 * 110.36693 * 81.82844 * 19 18 16 43 43 H 0.96996 * 120.00302 * 180.02562 * 24 23 21 44 44 H 1.09004 * 109.88415 * 239.52402 * 29 20 19 45 45 H 1.09001 * 109.87532 * 118.36229 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1787 2.0392 1.1652 5 8 2.6772 3.1470 1.1735 6 6 1.7466 1.4103 2.4383 7 7 1.0815 0.2535 2.4008 8 7 0.6859 -0.3427 3.4732 9 6 0.9319 0.2076 4.6679 10 6 0.5160 -0.4015 5.8620 11 6 0.7904 0.1971 7.0541 12 6 1.4797 1.4080 7.1096 13 6 1.8990 2.0293 5.9731 14 6 1.6345 1.4422 4.7243 15 7 2.0244 2.0111 3.5811 16 6 2.3265 2.0491 -1.2669 17 1 2.1150 1.3911 -2.1097 18 6 1.5373 3.3791 -1.3925 19 6 2.4511 4.1946 -2.3411 20 7 3.8244 3.8348 -1.9437 21 6 4.9405 4.6023 -2.1452 22 1 5.9061 4.2483 -1.8153 23 6 4.8309 5.8351 -2.7737 24 7 3.6542 6.2666 -3.1755 25 14 6.3533 6.8823 -3.0479 26 1 7.5432 6.1769 -2.5078 27 1 6.5363 7.1182 -4.5026 28 1 6.1906 8.1839 -2.3520 29 6 3.7972 2.5160 -1.2944 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 -0.0177 -1.3399 5.8356 36 1 0.4695 -0.2740 7.9713 37 1 1.6840 1.8600 8.0690 38 1 2.4315 2.9670 6.0311 39 1 0.5584 3.2116 -1.8415 40 1 1.4423 3.8700 -0.4239 41 1 2.2838 5.2629 -2.2032 42 1 2.2699 3.9120 -3.3780 43 1 3.5776 7.1279 -3.6151 44 1 4.1799 2.5957 -0.2769 45 1 4.3999 1.8094 -1.8650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033902264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:47 Heat of formation + Delta-G solvation = 121.428037 kcal Electronic energy + Delta-G solvation = -29825.758371 eV Core-core repulsion = 25846.404293 eV Total energy + Delta-G solvation = -3979.354079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.00179 -40.69500 -39.79690 -37.42544 -36.98868 -36.30786 -33.79896 -33.68040 -31.47439 -30.95584 -30.14702 -29.80044 -28.56642 -25.97561 -24.79117 -24.24761 -23.75268 -23.08844 -21.85005 -21.08007 -20.50677 -19.22848 -18.68259 -18.33527 -17.90289 -17.19053 -16.64900 -16.58750 -16.33150 -15.84336 -15.65569 -15.03130 -14.87998 -14.78686 -14.69530 -14.53674 -14.46660 -14.15763 -14.09797 -13.76492 -13.63879 -13.36656 -13.21557 -12.77550 -12.56243 -12.39164 -12.26008 -12.15171 -12.07729 -11.96611 -11.71991 -11.45428 -11.27946 -11.03491 -10.93015 -10.78401 -10.66365 -10.13945 -9.63475 -9.23388 -8.35066 -8.28722 -4.87824 -1.63435 0.41836 0.75715 0.78066 1.08073 1.63681 1.67866 1.83567 2.01137 2.04914 2.06441 2.59691 2.97726 3.01442 3.12546 3.51377 3.65485 3.79694 3.89217 4.03804 4.08263 4.28303 4.36284 4.39554 4.44934 4.50039 4.64456 4.67677 4.69752 4.74218 4.77690 4.84854 4.92192 4.99033 5.00157 5.10703 5.13900 5.40087 5.44797 5.54790 5.65904 5.95393 5.99555 6.09397 6.15307 6.42886 6.46388 6.70495 6.79566 6.99319 7.42493 7.57817 8.36687 9.53644 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.002903 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.111106 B = 9641.494496 C =10844.361588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.123 3.877 3 N -0.593 5.593 4 C 0.612 3.388 5 O -0.577 6.577 6 C 0.011 3.989 7 N -0.270 5.270 8 N -0.547 5.547 9 C 0.041 3.959 10 C -0.294 4.294 11 C -0.232 4.232 12 C -0.120 4.120 13 C -0.379 4.379 14 C 0.183 3.817 15 N -0.729 5.729 16 C 0.131 3.869 17 H 0.168 0.832 18 C -0.169 4.169 19 C 0.075 3.925 20 N -0.393 5.393 21 C 0.342 3.658 22 H 0.266 0.734 23 C -0.080 4.080 24 N -0.548 5.548 25 Si 1.044 2.956 26 H -0.208 1.208 27 H -0.238 1.238 28 H -0.267 1.267 29 C 0.035 3.965 30 H 0.055 0.945 31 H 0.011 0.989 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.050 0.950 41 H 0.140 0.860 42 H 0.167 0.833 43 H 0.376 0.624 44 H 0.096 0.904 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.202 20.209 -48.779 56.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.001 3.999 3 N -0.325 5.325 4 C 0.403 3.597 5 O -0.457 6.457 6 C -0.256 4.256 7 N -0.112 5.112 8 N -0.405 5.405 9 C -0.075 4.075 10 C -0.328 4.328 11 C -0.255 4.255 12 C -0.141 4.141 13 C -0.416 4.416 14 C 0.046 3.954 15 N -0.468 5.468 16 C 0.027 3.973 17 H 0.185 0.815 18 C -0.208 4.208 19 C -0.045 4.045 20 N -0.059 5.059 21 C 0.161 3.839 22 H 0.282 0.718 23 C -0.313 4.313 24 N -0.175 5.175 25 Si 0.855 3.145 26 H -0.128 1.128 27 H -0.161 1.161 28 H -0.191 1.191 29 C -0.087 4.087 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.069 0.931 41 H 0.157 0.843 42 H 0.184 0.816 43 H 0.196 0.804 44 H 0.114 0.886 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 19.687 20.144 -50.076 57.454 hybrid contribution -0.594 0.698 2.280 2.458 sum 19.093 20.841 -47.796 55.528 Atomic orbital electron populations 1.21859 0.96869 1.01215 0.99644 1.21738 0.94506 0.80657 1.03045 1.47552 1.66320 1.14903 1.03774 1.17175 0.76827 0.83590 0.82126 1.90372 1.47146 1.20798 1.87375 1.23007 1.10724 0.97175 0.94709 1.72641 1.08154 1.06974 1.23476 1.73832 1.41634 1.31264 0.93772 1.20850 0.95966 0.94355 0.96351 1.19009 1.19047 1.03085 0.91700 1.19555 1.11377 0.99302 0.95274 1.19825 1.02358 0.96389 0.95531 1.18888 1.26045 1.05181 0.91459 1.19719 0.90314 0.90882 0.94474 1.68631 1.43317 1.38546 0.96286 1.22518 0.92273 0.95448 0.87043 0.81489 1.23504 1.01084 0.95666 1.00576 1.24103 0.75100 1.03910 1.01368 1.49789 1.10644 1.15364 1.30112 1.26552 0.92927 0.85412 0.78996 0.71835 1.28810 1.06217 0.98980 0.97322 1.69906 1.25453 1.22198 0.99946 0.84017 0.71966 0.76754 0.81771 1.12844 1.16073 1.19142 1.23952 1.01174 0.81925 1.01614 0.92585 0.97001 0.91131 0.86369 0.92449 0.91684 0.88813 0.88391 0.92012 0.86669 0.93125 0.84326 0.81606 0.80352 0.88619 0.80519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 65. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.53 71.98 0.69 -4.63 16 2 C 0.12 4.36 5.66 86.38 0.49 4.85 16 3 N -0.59 -19.80 2.54 -794.00 -2.02 -21.82 16 4 C 0.61 31.64 6.78 86.96 0.59 32.23 16 5 O -0.58 -29.01 13.23 -3.66 -0.05 -29.06 16 6 C 0.01 0.79 7.44 137.46 1.02 1.81 16 7 N -0.27 -19.37 5.14 -52.35 -0.27 -19.63 16 8 N -0.55 -44.63 11.68 -51.79 -0.60 -45.24 16 9 C 0.04 3.50 6.68 40.33 0.27 3.77 16 10 C -0.29 -23.65 10.00 22.30 0.22 -23.43 16 11 C -0.23 -17.17 9.95 22.08 0.22 -16.95 16 12 C -0.12 -8.88 9.95 22.07 0.22 -8.66 16 13 C -0.38 -30.60 10.01 22.33 0.22 -30.38 16 14 C 0.18 15.70 6.61 40.42 0.27 15.96 16 15 N -0.73 -59.61 10.22 -182.37 -1.86 -61.47 16 16 C 0.13 1.70 3.44 46.18 0.16 1.86 16 17 H 0.17 0.42 7.84 -2.39 -0.02 0.40 16 18 C -0.17 -2.15 6.40 31.99 0.20 -1.95 16 19 C 0.08 -0.12 5.89 86.86 0.51 0.39 16 20 N -0.39 1.64 3.40 -691.96 -2.35 -0.71 16 21 C 0.34 -4.54 10.27 84.03 0.86 -3.68 16 22 H 0.27 -6.23 7.83 -2.91 -0.02 -6.25 16 23 C -0.08 1.04 5.49 84.86 0.47 1.51 16 24 N -0.55 5.34 10.09 21.65 0.22 5.56 16 25 Si 1.04 -13.75 29.55 68.60 2.03 -11.73 16 26 H -0.21 2.98 7.11 99.48 0.71 3.69 16 27 H -0.24 2.74 7.11 99.48 0.71 3.45 16 28 H -0.27 1.71 7.11 99.48 0.71 2.41 16 29 C 0.03 0.15 6.47 86.73 0.56 0.71 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.01 0.59 6.32 -2.38 -0.02 0.58 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.12 2.50 7.90 -2.39 -0.02 2.48 16 34 H 0.06 2.88 5.60 -2.39 -0.01 2.86 16 35 H 0.06 5.04 8.06 -2.91 -0.02 5.01 16 36 H 0.09 6.11 8.06 -2.91 -0.02 6.08 16 37 H 0.10 6.27 8.06 -2.91 -0.02 6.25 16 38 H 0.06 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.38 6.01 -2.39 -0.01 1.36 16 41 H 0.14 -0.11 5.87 -2.39 -0.01 -0.13 16 42 H 0.17 -1.64 8.14 -2.39 -0.02 -1.66 16 43 H 0.38 -4.73 8.31 -92.71 -0.77 -5.50 16 44 H 0.10 1.56 6.10 -2.39 -0.01 1.54 16 45 H 0.18 -1.20 8.14 -2.39 -0.02 -1.22 16 Total: -1.00 -182.40 362.47 3.09 -179.31 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 1.03 Total: 31.36 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 6.98 Total: -26.57 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -6.89 Total: -143.31 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: -13.75 SS G_CDS: 2.03 Total: -11.73 kcal Total: -182.40 3.09 -179.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033902264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 300.738 kcal (2) G-P(sol) polarization free energy of solvation -182.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -179.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds