Wall clock time and date at job start Wed Apr 1 2020 01:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40236 * 126.65383 * 2 1 4 4 N 1.28638 * 109.50500 * 180.02562 * 3 2 1 5 5 C 1.35425 * 110.13245 * 359.97438 * 4 3 2 6 6 C 1.39802 * 133.04280 * 180.30184 * 5 4 3 7 7 C 1.38883 * 119.55501 * 180.19847 * 6 5 4 8 8 C 1.47719 * 119.86088 * 179.77176 * 7 6 5 9 9 O 1.21573 * 119.99975 * 32.86482 * 8 7 6 10 10 N 1.34778 * 120.00172 * 212.85943 * 8 7 6 11 11 C 1.46745 * 125.32537 * 356.01583 * 10 8 7 12 12 C 1.53928 * 106.72041 * 161.92680 * 11 10 8 13 13 H 1.08996 * 113.60786 * 151.16693 * 12 11 10 14 14 C 1.53972 * 109.24738 * 278.36527 * 12 11 10 15 15 N 1.46772 * 106.62789 * 138.18743 * 14 12 11 16 16 C 1.36939 * 125.33841 * 161.50442 * 15 14 12 17 17 H 1.08003 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00044 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00197 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00246 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46865 * 59.99368 * 20 18 16 22 22 H 1.48497 * 109.47541 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46880 * 299.99859 * 20 18 16 24 24 C 1.48237 * 109.51717 * 341.52290 * 15 14 12 25 25 C 1.53725 * 107.13583 * 0.47514 * 24 15 14 26 26 H 1.09003 * 112.56025 * 140.21051 * 25 24 15 27 27 C 1.46632 * 125.32826 * 176.31976 * 10 8 7 28 28 C 1.40259 * 120.27645 * 359.49092 * 7 6 5 29 29 C 1.36266 * 120.45071 * 0.23916 * 28 7 6 30 30 C 1.37257 * 126.66094 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.47581 * 269.99810 * 1 2 3 32 32 H 1.09004 * 109.47959 * 29.99968 * 1 2 3 33 33 H 1.09000 * 109.47408 * 149.99974 * 1 2 3 34 34 H 1.07999 * 120.22203 * 359.96136 * 6 5 4 35 35 H 1.09002 * 110.00707 * 281.23276 * 11 10 8 36 36 H 1.08996 * 110.01051 * 42.60643 * 11 10 8 37 37 H 1.08999 * 110.02157 * 257.47730 * 14 12 11 38 38 H 1.09000 * 110.02602 * 18.89167 * 14 12 11 39 39 H 0.96994 * 120.00145 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.29894 * 241.03557 * 24 15 14 41 41 H 1.09003 * 110.03702 * 119.76616 * 24 15 14 42 42 H 1.09002 * 109.76335 * 300.21366 * 27 10 8 43 43 H 1.09000 * 109.76672 * 60.93232 * 27 10 8 44 44 H 1.07995 * 119.77270 * 180.25900 * 28 7 6 45 45 H 1.08002 * 119.92322 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1251 0.0000 4 7 3.5313 0.7458 -0.0005 5 6 3.6018 -0.6067 -0.0004 6 6 4.6718 -1.5064 0.0046 7 6 4.4187 -2.8719 -0.0009 8 6 5.5442 -3.8286 -0.0008 9 8 6.5783 -3.5505 0.5747 10 7 5.4247 -5.0099 -0.6386 11 6 4.2080 -5.4995 -1.2969 12 6 4.6439 -6.6238 -2.2536 13 1 3.8751 -7.3785 -2.4193 14 6 5.1694 -6.0026 -3.5608 15 7 6.3671 -6.7636 -3.9357 16 6 6.9316 -6.7882 -5.1830 17 1 6.4919 -6.2156 -5.9863 18 6 8.0686 -7.5499 -5.4154 19 7 8.6043 -8.2482 -4.4366 20 14 8.8384 -7.5841 -7.1171 21 1 9.2423 -6.2088 -7.5052 22 1 10.0338 -8.4649 -7.1021 23 1 7.8512 -8.1051 -8.0965 24 6 6.8732 -7.5037 -2.7552 25 6 5.9268 -7.1912 -1.5848 26 1 5.7272 -8.0645 -0.9638 27 6 6.4881 -6.0098 -0.7778 28 6 3.0988 -3.3464 -0.0007 29 6 2.0515 -2.4746 0.0000 30 6 2.2845 -1.1011 -0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3635 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 5.6885 -1.1420 0.0089 35 1 3.5134 -5.8909 -0.5535 36 1 3.7377 -4.6927 -1.8591 37 1 4.4147 -6.0851 -4.3430 38 1 5.4274 -4.9560 -3.3994 39 1 9.3990 -8.7801 -4.5989 40 1 7.8839 -7.1778 -2.5094 41 1 6.8696 -8.5750 -2.9563 42 1 7.3371 -5.5739 -1.3045 43 1 6.8027 -6.3530 0.2077 44 1 2.9112 -4.4100 -0.0008 45 1 1.0385 -2.8494 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048892952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:41 Heat of formation + Delta-G solvation = 127.871836 kcal Electronic energy + Delta-G solvation = -29393.023791 eV Core-core repulsion = 25413.949137 eV Total energy + Delta-G solvation = -3979.074654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39650 -40.47500 -38.53940 -37.22073 -35.09751 -34.98375 -32.35111 -31.14141 -31.06167 -29.94722 -29.63506 -27.93171 -25.97806 -25.64329 -24.23301 -23.77625 -22.50917 -21.52781 -20.25958 -19.90525 -19.43497 -18.44567 -17.63703 -16.90523 -16.48800 -16.19823 -15.96020 -15.89574 -15.01792 -14.75999 -14.60859 -14.29241 -13.95035 -13.90031 -13.61199 -13.44895 -13.23436 -12.92051 -12.74328 -12.61918 -12.28015 -12.16211 -12.06799 -11.78784 -11.67525 -11.42563 -11.09916 -11.03922 -10.92914 -10.80402 -10.43047 -10.16539 -10.04833 -9.95012 -9.87225 -9.66425 -9.21515 -8.72784 -8.63673 -8.41357 -6.86518 -5.74225 -3.07483 0.13535 0.63977 1.69897 1.85893 2.66707 2.97937 3.39923 3.44651 3.45545 3.46350 3.74616 3.98425 4.19078 4.33492 4.46869 4.55712 4.59028 4.69919 4.74970 4.80281 4.88383 4.94918 5.04761 5.24085 5.34827 5.48349 5.50059 5.55040 5.60751 5.64824 5.71600 5.78488 5.88564 5.90174 6.06650 6.09079 6.21638 6.24299 6.30453 6.48194 6.57398 6.64321 6.79691 7.48500 7.53082 7.61129 7.65041 7.77427 8.19330 8.21587 9.17964 9.79584 10.43303 11.37750 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002583 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.585099 B =10838.665132 C =11191.838555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.400 5.400 3 N -0.010 5.010 4 N -0.207 5.207 5 C -0.026 4.026 6 C 0.030 3.970 7 C -0.138 4.138 8 C 0.574 3.426 9 O -0.535 6.535 10 N -0.601 5.601 11 C 0.104 3.896 12 C -0.110 4.110 13 H 0.101 0.899 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.188 3.812 25 C -0.123 4.123 26 H 0.089 0.911 27 C 0.119 3.881 28 C -0.047 4.047 29 C -0.128 4.128 30 C 0.103 3.897 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.017 0.983 39 H 0.254 0.746 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.152 0.848 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.552 8.986 11.347 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.194 5.194 3 N 0.010 4.990 4 N -0.086 5.086 5 C -0.149 4.149 6 C 0.007 3.993 7 C -0.144 4.144 8 C 0.363 3.637 9 O -0.413 6.413 10 N -0.333 5.333 11 C -0.019 4.019 12 C -0.130 4.130 13 H 0.119 0.881 14 C 0.019 3.981 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.571 5.571 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.063 3.937 25 C -0.143 4.143 26 H 0.107 0.893 27 C -0.003 4.003 28 C -0.069 4.069 29 C -0.150 4.150 30 C -0.019 4.019 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.035 0.965 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.169 0.831 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.832 10.664 11.578 24.545 hybrid contribution 0.084 -1.042 -0.947 1.410 sum -18.748 9.623 10.632 23.604 Atomic orbital electron populations 1.22019 0.72715 1.05343 1.04135 1.50104 1.07884 1.03511 1.57902 1.81639 0.94045 1.07569 1.15728 1.74869 1.11181 1.10446 1.12150 1.19749 0.93053 0.90138 1.12008 1.20508 0.98427 0.89785 0.90554 1.19637 0.93776 0.93176 1.07814 1.17624 0.86878 0.80280 0.78922 1.90812 1.29954 1.76217 1.44271 1.48105 1.14215 1.17379 1.53601 1.22258 0.87242 0.97389 0.94997 1.22960 0.97707 0.96372 0.95943 0.88131 1.21225 0.89895 0.94260 0.92691 1.44581 1.27797 1.53379 1.07352 1.18996 1.07045 1.23972 0.85753 0.90540 1.24781 0.98198 0.99499 0.97845 1.69918 1.23345 1.33582 1.30210 0.86195 0.78616 0.77431 0.83492 1.21179 1.21574 1.21191 1.21331 0.93585 0.96694 0.82078 1.23156 0.96568 0.96252 0.98355 0.89298 1.22032 0.90458 0.87896 0.99900 1.21372 0.90663 1.01025 0.93790 1.19694 1.00477 0.87906 1.06938 1.19488 0.90882 0.90616 1.00906 0.89923 0.88413 0.88860 0.83165 0.91497 0.90388 0.94724 0.96511 0.93613 0.93007 0.93146 0.90387 0.91834 0.83061 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.39 11.52 59.84 0.69 1.08 16 2 N -0.40 -3.75 4.11 -65.43 -0.27 -4.02 16 3 N -0.01 -0.12 13.72 60.35 0.83 0.71 16 4 N -0.21 -2.89 12.40 32.15 0.40 -2.49 16 5 C -0.03 -0.33 7.26 -84.76 -0.62 -0.95 16 6 C 0.03 0.39 9.65 -38.76 -0.37 0.02 16 7 C -0.14 -1.71 5.58 -105.03 -0.59 -2.30 16 8 C 0.57 8.91 7.55 -12.39 -0.09 8.82 16 9 O -0.53 -10.21 17.06 5.30 0.09 -10.12 16 10 N -0.60 -8.85 3.30 -173.54 -0.57 -9.43 16 11 C 0.10 1.21 4.27 -3.42 -0.01 1.20 16 12 C -0.11 -1.61 4.17 -88.35 -0.37 -1.98 16 13 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.15 2.79 6.48 -3.39 -0.02 2.77 16 15 N -0.60 -14.73 3.42 -170.56 -0.58 -15.32 16 16 C -0.23 -6.25 10.25 -15.06 -0.15 -6.40 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.46 10.25 55.49 0.57 -25.90 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.19 4.25 4.84 -2.71 -0.01 4.24 16 25 C -0.12 -2.05 3.97 -88.60 -0.35 -2.40 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 27 C 0.12 1.98 6.21 -3.61 -0.02 1.96 16 28 C -0.05 -0.42 7.92 -39.53 -0.31 -0.74 16 29 C -0.13 -1.01 9.97 -39.89 -0.40 -1.40 16 30 C 0.10 1.07 6.93 -84.10 -0.58 0.48 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.15 1.97 7.95 -52.49 -0.42 1.55 16 35 H 0.07 0.57 6.76 -51.93 -0.35 0.22 16 36 H 0.08 0.83 6.63 -51.93 -0.34 0.49 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.34 7.71 -51.93 -0.40 -0.06 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.33 6.76 -51.93 -0.35 0.97 16 41 H 0.05 1.26 7.41 -51.93 -0.38 0.88 16 42 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.15 1.05 4.90 -52.49 -0.26 0.79 16 45 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -34.74 363.78 -8.21 -42.95 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.81 Total: -2.86 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -3.32 Total: 4.11 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.37 Total: -56.44 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.74 -8.21 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.822 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds