Wall clock time and date at job start Wed Apr 1 2020 01:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40236 * 126.65383 * 2 1 4 4 N 1.28638 * 109.50500 * 180.02562 * 3 2 1 5 5 C 1.35425 * 110.13245 * 359.97438 * 4 3 2 6 6 C 1.39802 * 133.04280 * 180.30184 * 5 4 3 7 7 C 1.38883 * 119.55501 * 180.19847 * 6 5 4 8 8 C 1.47719 * 119.86088 * 179.77176 * 7 6 5 9 9 O 1.21573 * 119.99975 * 32.86482 * 8 7 6 10 10 N 1.34778 * 120.00172 * 212.85943 * 8 7 6 11 11 C 1.46745 * 125.32537 * 356.01583 * 10 8 7 12 12 C 1.53928 * 106.72041 * 161.92680 * 11 10 8 13 13 H 1.08996 * 113.60786 * 151.16693 * 12 11 10 14 14 C 1.53972 * 109.24738 * 278.36527 * 12 11 10 15 15 N 1.46772 * 106.62789 * 138.18743 * 14 12 11 16 16 C 1.36939 * 125.33841 * 161.50442 * 15 14 12 17 17 H 1.08003 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.38808 * 120.00044 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00197 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00246 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46865 * 59.99368 * 20 18 16 22 22 H 1.48497 * 109.47541 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46880 * 299.99859 * 20 18 16 24 24 C 1.48237 * 109.51717 * 341.52290 * 15 14 12 25 25 C 1.53725 * 107.13583 * 0.47514 * 24 15 14 26 26 H 1.09003 * 112.56025 * 140.21051 * 25 24 15 27 27 C 1.46632 * 125.32826 * 176.31976 * 10 8 7 28 28 C 1.40259 * 120.27645 * 359.49092 * 7 6 5 29 29 C 1.36266 * 120.45071 * 0.23916 * 28 7 6 30 30 C 1.37257 * 126.66094 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.47581 * 269.99810 * 1 2 3 32 32 H 1.09004 * 109.47959 * 29.99968 * 1 2 3 33 33 H 1.09000 * 109.47408 * 149.99974 * 1 2 3 34 34 H 1.07999 * 120.22203 * 359.96136 * 6 5 4 35 35 H 1.09002 * 110.00707 * 281.23276 * 11 10 8 36 36 H 1.08996 * 110.01051 * 42.60643 * 11 10 8 37 37 H 1.08999 * 110.02157 * 257.47730 * 14 12 11 38 38 H 1.09000 * 110.02602 * 18.89167 * 14 12 11 39 39 H 0.96994 * 120.00145 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.29894 * 241.03557 * 24 15 14 41 41 H 1.09003 * 110.03702 * 119.76616 * 24 15 14 42 42 H 1.09002 * 109.76335 * 300.21366 * 27 10 8 43 43 H 1.09000 * 109.76672 * 60.93232 * 27 10 8 44 44 H 1.07995 * 119.77270 * 180.25900 * 28 7 6 45 45 H 1.08002 * 119.92322 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1251 0.0000 4 7 3.5313 0.7458 -0.0005 5 6 3.6018 -0.6067 -0.0004 6 6 4.6718 -1.5064 0.0046 7 6 4.4187 -2.8719 -0.0009 8 6 5.5442 -3.8286 -0.0008 9 8 6.5783 -3.5505 0.5747 10 7 5.4247 -5.0099 -0.6386 11 6 4.2080 -5.4995 -1.2969 12 6 4.6439 -6.6238 -2.2536 13 1 3.8751 -7.3785 -2.4193 14 6 5.1694 -6.0026 -3.5608 15 7 6.3671 -6.7636 -3.9357 16 6 6.9316 -6.7882 -5.1830 17 1 6.4919 -6.2156 -5.9863 18 6 8.0686 -7.5499 -5.4154 19 7 8.6043 -8.2482 -4.4366 20 14 8.8384 -7.5841 -7.1171 21 1 9.2423 -6.2088 -7.5052 22 1 10.0338 -8.4649 -7.1021 23 1 7.8512 -8.1051 -8.0965 24 6 6.8732 -7.5037 -2.7552 25 6 5.9268 -7.1912 -1.5848 26 1 5.7272 -8.0645 -0.9638 27 6 6.4881 -6.0098 -0.7778 28 6 3.0988 -3.3464 -0.0007 29 6 2.0515 -2.4746 0.0000 30 6 2.2845 -1.1011 -0.0005 31 1 -0.3634 0.0000 1.0277 32 1 -0.3635 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 5.6885 -1.1420 0.0089 35 1 3.5134 -5.8909 -0.5535 36 1 3.7377 -4.6927 -1.8591 37 1 4.4147 -6.0851 -4.3430 38 1 5.4274 -4.9560 -3.3994 39 1 9.3990 -8.7801 -4.5989 40 1 7.8839 -7.1778 -2.5094 41 1 6.8696 -8.5750 -2.9563 42 1 7.3371 -5.5739 -1.3045 43 1 6.8027 -6.3530 0.2077 44 1 2.9112 -4.4100 -0.0008 45 1 1.0385 -2.8494 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048892952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:40 Heat of formation + Delta-G solvation = 103.114470 kcal Electronic energy + Delta-G solvation = -29394.097351 eV Core-core repulsion = 25413.949137 eV Total energy + Delta-G solvation = -3980.148214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.20227 -41.67999 -39.80908 -38.18864 -36.60659 -35.75043 -34.09873 -32.33590 -31.84869 -31.23256 -31.07595 -28.47766 -27.51163 -27.13856 -25.49334 -24.72443 -23.66824 -22.24846 -21.92965 -20.96212 -20.80506 -19.45699 -18.78024 -18.28699 -17.34091 -17.29363 -17.09068 -16.94697 -16.71107 -16.00508 -15.63113 -15.52911 -15.20554 -14.75427 -14.64747 -14.43551 -14.25578 -14.03112 -13.83510 -13.54237 -13.47642 -13.42094 -13.26876 -13.18747 -12.98142 -12.81064 -12.69710 -12.56057 -12.04698 -11.90027 -11.83677 -11.72746 -11.61497 -11.53854 -11.36176 -11.13293 -10.69338 -10.04172 -9.72425 -9.38206 -8.86318 -7.84423 -5.18468 -0.67794 -0.20259 1.05748 1.09866 1.45081 1.48047 1.54053 1.57531 1.88899 2.50005 2.55752 2.94257 3.27979 3.33735 3.41819 3.50174 3.51576 3.63291 3.81992 3.92651 3.96370 3.98106 4.22167 4.28555 4.38398 4.41359 4.48164 4.57969 4.61316 4.69389 4.74691 4.82917 4.85589 4.87456 4.92167 5.04292 5.07603 5.10582 5.18217 5.25406 5.39184 5.42570 5.49302 5.63050 5.64491 5.81600 6.21673 6.45845 6.81498 7.00758 7.11514 7.80548 8.42921 9.25645 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002583 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.585099 B =10838.665132 C =11191.838555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.384 5.384 3 N -0.030 5.030 4 N -0.249 5.249 5 C -0.048 4.048 6 C 0.005 3.995 7 C -0.138 4.138 8 C 0.570 3.430 9 O -0.586 6.586 10 N -0.600 5.600 11 C 0.104 3.896 12 C -0.093 4.093 13 H 0.137 0.863 14 C 0.137 3.863 15 N -0.628 5.628 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.066 4.066 19 N -0.950 5.950 20 Si 0.974 3.026 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.195 3.805 25 C -0.109 4.109 26 H 0.123 0.877 27 C 0.125 3.875 28 C -0.044 4.044 29 C -0.098 4.098 30 C 0.100 3.900 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.004 0.996 39 H 0.246 0.754 40 H 0.005 0.995 41 H 0.020 0.980 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.942 8.080 11.782 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.179 5.179 3 N -0.010 5.010 4 N -0.127 5.127 5 C -0.173 4.173 6 C -0.018 4.018 7 C -0.144 4.144 8 C 0.361 3.639 9 O -0.467 6.467 10 N -0.331 5.331 11 C -0.018 4.018 12 C -0.112 4.112 13 H 0.155 0.845 14 C 0.012 3.988 15 N -0.354 5.354 16 C -0.371 4.371 17 H 0.097 0.903 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.803 3.197 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.199 1.199 24 C 0.070 3.930 25 C -0.128 4.128 26 H 0.141 0.859 27 C 0.002 3.998 28 C -0.066 4.066 29 C -0.120 4.120 30 C -0.023 4.023 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.038 0.962 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.202 0.798 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -24.307 9.793 12.000 28.822 hybrid contribution 1.688 -0.685 -1.110 2.133 sum -22.619 9.108 10.890 26.705 Atomic orbital electron populations 1.22596 0.69381 1.07494 1.06122 1.50521 1.09468 1.02374 1.55550 1.81526 0.94127 1.09100 1.16231 1.74839 1.12232 1.11544 1.14106 1.19904 0.94469 0.89975 1.12915 1.20367 0.97861 0.90681 0.92901 1.19458 0.94459 0.91775 1.08716 1.18161 0.87108 0.80546 0.78097 1.90782 1.32212 1.77135 1.46574 1.48151 1.14812 1.16801 1.53347 1.22603 0.86442 0.96929 0.95776 1.23007 0.97136 0.97673 0.93377 0.84492 1.21478 0.88321 0.93263 0.95754 1.44925 1.29558 1.54005 1.06935 1.19388 1.07174 1.23238 0.87267 0.90281 1.25589 0.99077 0.99927 1.01283 1.70150 1.23455 1.34457 1.31847 0.85218 0.77621 0.77133 0.79766 1.21012 1.22126 1.19865 1.21038 0.93305 0.94516 0.84136 1.22991 0.96136 0.97373 0.96344 0.85855 1.21744 0.89989 0.88319 0.99715 1.21631 0.88727 1.02794 0.93416 1.20219 1.02546 0.85965 1.03264 1.19836 0.89777 0.91980 1.00741 0.87915 0.87540 0.85559 0.85511 0.85791 0.88522 0.93621 0.97820 0.94449 0.97658 0.96224 0.95273 0.90897 0.79775 0.79126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.52 127.77 1.47 1.74 16 2 N -0.38 -6.05 4.11 -360.93 -1.48 -7.53 16 3 N -0.03 -0.72 13.72 37.02 0.51 -0.21 16 4 N -0.25 -7.15 12.40 -52.21 -0.65 -7.80 16 5 C -0.05 -1.23 7.26 39.57 0.29 -0.95 16 6 C 0.01 0.14 9.65 22.80 0.22 0.36 16 7 C -0.14 -3.22 5.58 -20.13 -0.11 -3.34 16 8 C 0.57 17.56 7.55 86.75 0.65 18.22 16 9 O -0.59 -23.58 17.06 -3.94 -0.07 -23.64 16 10 N -0.60 -16.59 3.30 -821.24 -2.71 -19.30 16 11 C 0.10 1.87 4.27 86.65 0.37 2.24 16 12 C -0.09 -2.33 4.17 -9.32 -0.04 -2.37 16 13 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.14 5.05 6.48 86.66 0.56 5.61 16 15 N -0.63 -31.17 3.42 -693.54 -2.37 -33.54 16 16 C -0.24 -13.46 10.25 84.03 0.86 -12.59 16 17 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 18 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 19 N -0.95 -57.05 10.25 21.65 0.22 -56.83 16 20 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C 0.19 9.15 4.84 86.29 0.42 9.57 16 25 C -0.11 -3.44 3.97 -9.49 -0.04 -3.48 16 26 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 27 C 0.13 4.19 6.21 86.59 0.54 4.73 16 28 C -0.04 -0.57 7.92 22.30 0.18 -0.40 16 29 C -0.10 -0.96 9.97 22.07 0.22 -0.74 16 30 C 0.10 1.74 6.93 39.16 0.27 2.02 16 31 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.11 0.22 8.14 -2.38 -0.02 0.20 16 33 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 34 H 0.13 3.81 7.95 -2.91 -0.02 3.78 16 35 H 0.12 1.02 6.76 -2.39 -0.02 1.00 16 36 H 0.10 1.49 6.63 -2.39 -0.02 1.48 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.00 0.16 7.71 -2.39 -0.02 0.14 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.01 0.29 6.76 -2.39 -0.02 0.27 16 41 H 0.02 1.02 7.41 -2.39 -0.02 1.01 16 42 H 0.03 1.25 7.30 -2.39 -0.02 1.23 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.19 1.12 4.90 -2.91 -0.01 1.11 16 45 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -86.48 363.78 2.83 -83.65 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.03 Total: -0.26 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.33 Total: 17.33 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -6.48 Total: -125.23 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -86.48 2.83 -83.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048892952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.761 kcal (2) G-P(sol) polarization free energy of solvation -86.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds