Wall clock time and date at job start Wed Apr 1 2020 01:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39795 * 125.34257 * 2 1 4 4 C 1.30195 * 110.13373 * 179.97438 * 3 2 1 5 5 C 1.45971 * 107.58605 * 0.26958 * 4 3 2 6 6 C 1.39661 * 134.11812 * 180.49992 * 5 4 3 7 7 C 1.39504 * 117.95311 * 179.54540 * 6 5 4 8 8 C 1.47687 * 120.41269 * 179.72669 * 7 6 5 9 9 O 1.21575 * 119.99990 * 204.49139 * 8 7 6 10 10 N 1.34770 * 119.99783 * 24.48490 * 8 7 6 11 11 C 1.46677 * 125.33512 * 185.61155 * 10 8 7 12 12 C 1.53724 * 107.94178 * 180.54736 * 11 10 8 13 13 H 1.09002 * 112.56218 * 139.71634 * 12 11 10 14 14 C 1.53684 * 109.34393 * 265.60304 * 12 11 10 15 15 N 1.47889 * 107.36863 * 127.24231 * 14 12 11 16 16 C 1.36936 * 125.18006 * 181.07396 * 15 14 12 17 17 H 1.08007 * 120.00074 * 180.48275 * 16 15 14 18 18 C 1.38814 * 120.00556 * 0.48313 * 16 15 14 19 19 N 1.31618 * 119.99256 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00453 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46889 * 59.99851 * 20 18 16 22 22 H 1.48504 * 109.47241 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47208 * 300.00130 * 20 18 16 24 24 C 1.46746 * 109.48739 * 1.49632 * 15 14 12 25 25 C 1.53928 * 106.71913 * 341.23601 * 24 15 14 26 26 H 1.08997 * 113.00904 * 150.83709 * 25 24 15 27 27 C 1.46771 * 125.34154 * 5.31387 * 10 8 7 28 28 C 1.40190 * 119.17741 * 359.69561 * 7 6 5 29 29 N 1.31183 * 121.37314 * 0.03062 * 28 7 6 30 30 C 1.32927 * 121.85096 * 359.96995 * 29 28 7 31 31 H 1.08998 * 109.47286 * 90.01812 * 1 2 3 32 32 H 1.08996 * 109.47169 * 210.02262 * 1 2 3 33 33 H 1.09000 * 109.46836 * 330.02163 * 1 2 3 34 34 H 1.08009 * 126.20759 * 179.97438 * 4 3 2 35 35 H 1.08004 * 121.01905 * 359.21837 * 6 5 4 36 36 H 1.08997 * 109.76984 * 300.16798 * 11 10 8 37 37 H 1.08993 * 109.77175 * 60.93042 * 11 10 8 38 38 H 1.08998 * 109.76366 * 247.19494 * 14 12 11 39 39 H 1.09000 * 109.76220 * 7.91710 * 14 12 11 40 40 H 0.97004 * 119.99366 * 179.97438 * 19 18 16 41 41 H 1.09008 * 110.00256 * 221.92877 * 24 15 14 42 42 H 1.08997 * 110.01119 * 100.55586 * 24 15 14 43 43 H 1.09000 * 110.02486 * 280.76722 * 27 10 8 44 44 H 1.09000 * 110.03195 * 42.18654 * 27 10 8 45 45 H 1.08002 * 119.30974 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5300 0.7988 0.0005 5 6 3.5906 -0.6597 -0.0056 6 6 4.6326 -1.5895 0.0008 7 6 4.3001 -2.9443 0.0009 8 6 5.3588 -3.9740 0.0015 9 8 5.1268 -5.0847 -0.4350 10 7 6.5822 -3.6822 0.4856 11 6 7.7478 -4.5713 0.4375 12 6 8.9240 -3.8472 1.1124 13 1 9.5236 -4.5125 1.7337 14 6 9.7597 -3.1268 0.0426 15 7 9.8938 -1.7155 0.4635 16 6 10.5536 -0.7422 -0.2382 17 1 10.6066 0.2634 0.1524 18 6 11.1546 -1.0478 -1.4516 19 7 11.0904 -2.2733 -1.9274 20 14 12.0540 0.2801 -2.4092 21 1 13.1652 0.8186 -1.5841 22 1 12.6025 -0.2985 -3.6621 23 1 11.1091 1.3760 -2.7428 24 6 9.2196 -1.5229 1.7527 25 6 8.2521 -2.7073 1.9276 26 1 8.0821 -2.9678 2.9723 27 6 6.9588 -2.4227 1.1383 28 6 2.9485 -3.3163 0.0011 29 7 1.9928 -2.4177 0.0006 30 6 2.2553 -1.1146 0.0005 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 0.0003 35 1 5.6642 -1.2695 0.0003 36 1 7.5286 -5.4959 0.9715 37 1 7.9986 -4.7947 -0.5994 38 1 10.7415 -3.5940 -0.0345 39 1 9.2503 -3.1786 -0.9197 40 1 11.5100 -2.4868 -2.7756 41 1 8.6639 -0.5852 1.7465 42 1 9.9523 -1.5175 2.5596 43 1 7.1380 -1.6526 0.3880 44 1 6.1695 -2.1045 1.8193 45 1 2.6886 -4.3646 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049131734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:33 Heat of formation + Delta-G solvation = 120.069020 kcal Electronic energy + Delta-G solvation = -29793.963730 eV Core-core repulsion = 25814.550720 eV Total energy + Delta-G solvation = -3979.413010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83041 -40.31543 -38.63027 -37.57364 -35.04589 -34.12169 -32.56927 -31.93436 -30.55284 -30.09038 -29.47478 -27.20489 -25.71197 -25.68396 -24.26568 -23.87956 -22.48967 -21.25328 -20.17884 -19.81435 -19.34779 -18.10877 -17.20652 -17.01886 -16.64674 -16.24229 -16.02203 -15.50483 -15.16609 -14.78227 -14.38436 -14.27604 -14.04143 -13.68775 -13.61916 -13.34861 -13.18153 -12.83816 -12.72169 -12.69285 -12.42026 -12.10401 -12.02883 -11.54820 -11.44413 -11.35603 -10.94897 -10.84128 -10.71211 -10.48133 -10.15856 -10.14461 -10.07097 -9.92625 -9.68948 -9.54900 -9.27416 -8.66635 -8.58410 -8.34470 -6.90819 -5.77874 -3.12007 0.53601 0.69957 1.86548 2.19045 2.83830 3.11106 3.36500 3.41351 3.43001 3.64657 3.89627 4.00277 4.34255 4.44169 4.46877 4.64197 4.70082 4.78264 4.93265 5.01666 5.09963 5.17077 5.18920 5.22305 5.35084 5.45296 5.51582 5.57944 5.62556 5.75031 5.79734 5.90646 5.95758 6.10406 6.18979 6.20734 6.29368 6.45982 6.51136 6.51590 6.57574 6.73970 7.14392 7.49390 7.50081 7.59859 7.69652 7.75415 8.18349 8.25108 9.14110 9.75769 10.39160 11.33540 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003402 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.728856 B = 8227.614416 C = 9597.910630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.396 5.396 3 N -0.243 5.243 4 C 0.099 3.901 5 C -0.236 4.236 6 C 0.037 3.963 7 C -0.223 4.223 8 C 0.583 3.417 9 O -0.542 6.542 10 N -0.601 5.601 11 C 0.121 3.879 12 C -0.124 4.124 13 H 0.091 0.909 14 C 0.184 3.816 15 N -0.604 5.604 16 C -0.233 4.233 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.146 3.854 25 C -0.111 4.111 26 H 0.091 0.909 27 C 0.106 3.894 28 C 0.226 3.774 29 N -0.509 5.509 30 C 0.327 3.673 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.207 0.793 35 H 0.162 0.838 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.254 0.746 41 H 0.038 0.962 42 H 0.020 0.980 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 1.630 7.649 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 N -0.055 5.055 4 C -0.100 4.100 5 C -0.246 4.246 6 C 0.009 3.991 7 C -0.231 4.231 8 C 0.372 3.628 9 O -0.421 6.421 10 N -0.333 5.333 11 C -0.001 4.001 12 C -0.144 4.144 13 H 0.109 0.891 14 C 0.060 3.940 15 N -0.331 5.331 16 C -0.361 4.361 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.019 3.981 25 C -0.131 4.131 26 H 0.110 0.890 27 C -0.016 4.016 28 C 0.056 3.944 29 N -0.224 5.224 30 C 0.087 3.913 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.224 0.776 35 H 0.179 0.821 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.101 0.899 44 H 0.087 0.913 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.426 1.864 7.166 19.858 hybrid contribution 1.907 0.362 -0.609 2.034 sum -16.519 2.226 6.556 17.912 Atomic orbital electron populations 1.21818 0.73357 1.04424 1.03318 1.48108 1.06362 1.00078 1.64048 1.76742 1.02764 1.07239 1.18742 1.25218 0.94888 0.92663 0.97182 1.20456 0.93953 0.94806 1.15392 1.21993 1.00208 0.90633 0.86255 1.20623 0.95616 0.93712 1.13140 1.17439 0.80702 0.86791 0.77901 1.90776 1.80863 1.22568 1.47915 1.48115 1.09470 1.18017 1.57738 1.21872 0.83983 0.92493 1.01730 1.23170 0.96020 0.96722 0.98462 0.89062 1.21363 0.96917 0.83039 0.92708 1.44512 1.62894 1.06423 1.19268 1.18976 1.26856 0.89891 1.00361 0.90438 1.24788 1.00822 0.96704 0.97846 1.69931 1.48591 1.17414 1.20791 0.86219 0.79593 0.80677 0.79356 1.21171 1.21621 1.21154 1.21146 0.92697 0.94441 0.89767 1.22966 0.94224 0.97632 0.98279 0.89038 1.22453 0.96559 0.86739 0.95886 1.22821 0.86163 0.98566 0.86894 1.66780 1.37133 0.98429 1.20011 1.19182 0.88740 0.88241 0.95094 0.91067 0.89146 0.89385 0.77607 0.82061 0.91981 0.90628 0.93647 0.92747 0.93598 0.94355 0.96216 0.89856 0.91340 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.43 59.85 0.68 1.56 16 2 N -0.40 -4.68 4.03 -67.18 -0.27 -4.95 16 3 N -0.24 -2.89 12.39 31.87 0.39 -2.50 16 4 C 0.10 1.06 12.30 -15.15 -0.19 0.88 16 5 C -0.24 -2.96 6.36 -105.20 -0.67 -3.63 16 6 C 0.04 0.47 8.33 -38.58 -0.32 0.15 16 7 C -0.22 -3.08 5.69 -104.83 -0.60 -3.68 16 8 C 0.58 9.36 7.64 -12.40 -0.09 9.27 16 9 O -0.54 -10.13 16.92 5.30 0.09 -10.04 16 10 N -0.60 -9.37 3.31 -173.34 -0.57 -9.94 16 11 C 0.12 1.96 6.25 -3.57 -0.02 1.94 16 12 C -0.12 -2.05 3.97 -88.60 -0.35 -2.40 16 13 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.18 4.06 4.83 -2.92 -0.01 4.05 16 15 N -0.60 -13.91 3.40 -170.92 -0.58 -14.49 16 16 C -0.23 -6.02 10.25 -15.06 -0.15 -6.17 16 17 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 18 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 19 N -0.92 -25.80 10.25 55.49 0.57 -25.23 16 20 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.15 2.61 6.37 -3.42 -0.02 2.58 16 25 C -0.11 -1.63 4.19 -88.24 -0.37 -2.00 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 27 C 0.11 1.48 4.33 -3.29 -0.01 1.47 16 28 C 0.23 2.92 10.73 -17.10 -0.18 2.74 16 29 N -0.51 -6.77 10.37 -12.03 -0.12 -6.89 16 30 C 0.33 4.32 7.96 -156.09 -1.24 3.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.21 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.16 1.96 4.50 -52.48 -0.24 1.73 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 39 H 0.05 1.36 6.48 -51.93 -0.34 1.03 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.04 0.64 7.95 -51.92 -0.41 0.23 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 1.29 5.99 -51.93 -0.31 0.98 16 44 H 0.07 0.80 7.13 -51.93 -0.37 0.43 16 45 H 0.18 2.00 7.83 -52.49 -0.41 1.59 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -32.68 363.65 -9.47 -42.15 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.78 Total: 0.62 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.65 Total: 9.60 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.59 Total: -64.01 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.68 -9.47 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049131734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.223 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds