Wall clock time and date at job start Wed Apr 1 2020 01:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.39795 * 125.34257 * 2 1 4 4 C 1.30195 * 110.13373 * 179.97438 * 3 2 1 5 5 C 1.45971 * 107.58605 * 0.26958 * 4 3 2 6 6 C 1.39661 * 134.11812 * 180.49992 * 5 4 3 7 7 C 1.39504 * 117.95311 * 179.54540 * 6 5 4 8 8 C 1.47687 * 120.41269 * 179.72669 * 7 6 5 9 9 O 1.21575 * 119.99990 * 204.49139 * 8 7 6 10 10 N 1.34770 * 119.99783 * 24.48490 * 8 7 6 11 11 C 1.46677 * 125.33512 * 185.61155 * 10 8 7 12 12 C 1.53724 * 107.94178 * 180.54736 * 11 10 8 13 13 H 1.09002 * 112.56218 * 139.71634 * 12 11 10 14 14 C 1.53684 * 109.34393 * 265.60304 * 12 11 10 15 15 N 1.47889 * 107.36863 * 127.24231 * 14 12 11 16 16 C 1.36936 * 125.18006 * 181.07396 * 15 14 12 17 17 H 1.08007 * 120.00074 * 180.48275 * 16 15 14 18 18 C 1.38814 * 120.00556 * 0.48313 * 16 15 14 19 19 N 1.31618 * 119.99256 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00453 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46889 * 59.99851 * 20 18 16 22 22 H 1.48504 * 109.47241 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47208 * 300.00130 * 20 18 16 24 24 C 1.46746 * 109.48739 * 1.49632 * 15 14 12 25 25 C 1.53928 * 106.71913 * 341.23601 * 24 15 14 26 26 H 1.08997 * 113.00904 * 150.83709 * 25 24 15 27 27 C 1.46771 * 125.34154 * 5.31387 * 10 8 7 28 28 C 1.40190 * 119.17741 * 359.69561 * 7 6 5 29 29 N 1.31183 * 121.37314 * 0.03062 * 28 7 6 30 30 C 1.32927 * 121.85096 * 359.96995 * 29 28 7 31 31 H 1.08998 * 109.47286 * 90.01812 * 1 2 3 32 32 H 1.08996 * 109.47169 * 210.02262 * 1 2 3 33 33 H 1.09000 * 109.46836 * 330.02163 * 1 2 3 34 34 H 1.08009 * 126.20759 * 179.97438 * 4 3 2 35 35 H 1.08004 * 121.01905 * 359.21837 * 6 5 4 36 36 H 1.08997 * 109.76984 * 300.16798 * 11 10 8 37 37 H 1.08993 * 109.77175 * 60.93042 * 11 10 8 38 38 H 1.08998 * 109.76366 * 247.19494 * 14 12 11 39 39 H 1.09000 * 109.76220 * 7.91710 * 14 12 11 40 40 H 0.97004 * 119.99366 * 179.97438 * 19 18 16 41 41 H 1.09008 * 110.00256 * 221.92877 * 24 15 14 42 42 H 1.08997 * 110.01119 * 100.55586 * 24 15 14 43 43 H 1.09000 * 110.02486 * 280.76722 * 27 10 8 44 44 H 1.09000 * 110.03195 * 42.18654 * 27 10 8 45 45 H 1.08002 * 119.30974 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5300 0.7988 0.0005 5 6 3.5906 -0.6597 -0.0056 6 6 4.6326 -1.5895 0.0008 7 6 4.3001 -2.9443 0.0009 8 6 5.3588 -3.9740 0.0015 9 8 5.1268 -5.0847 -0.4350 10 7 6.5822 -3.6822 0.4856 11 6 7.7478 -4.5713 0.4375 12 6 8.9240 -3.8472 1.1124 13 1 9.5236 -4.5125 1.7337 14 6 9.7597 -3.1268 0.0426 15 7 9.8938 -1.7155 0.4635 16 6 10.5536 -0.7422 -0.2382 17 1 10.6066 0.2634 0.1524 18 6 11.1546 -1.0478 -1.4516 19 7 11.0904 -2.2733 -1.9274 20 14 12.0540 0.2801 -2.4092 21 1 13.1652 0.8186 -1.5841 22 1 12.6025 -0.2985 -3.6621 23 1 11.1091 1.3760 -2.7428 24 6 9.2196 -1.5229 1.7527 25 6 8.2521 -2.7073 1.9276 26 1 8.0821 -2.9678 2.9723 27 6 6.9588 -2.4227 1.1383 28 6 2.9485 -3.3163 0.0011 29 7 1.9928 -2.4177 0.0006 30 6 2.2553 -1.1146 0.0005 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 0.0003 35 1 5.6642 -1.2695 0.0003 36 1 7.5286 -5.4959 0.9715 37 1 7.9986 -4.7947 -0.5994 38 1 10.7415 -3.5940 -0.0345 39 1 9.2503 -3.1786 -0.9197 40 1 11.5100 -2.4868 -2.7756 41 1 8.6639 -0.5852 1.7465 42 1 9.9523 -1.5175 2.5596 43 1 7.1380 -1.6526 0.3880 44 1 6.1695 -2.1045 1.8193 45 1 2.6886 -4.3646 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049131734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:32 Heat of formation + Delta-G solvation = 99.578887 kcal Electronic energy + Delta-G solvation = -29794.852248 eV Core-core repulsion = 25814.550720 eV Total energy + Delta-G solvation = -3980.301529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76696 -41.55769 -39.85884 -38.70278 -36.57405 -35.06349 -34.10711 -33.13035 -31.66910 -31.29214 -31.05326 -28.06861 -27.27880 -27.09181 -25.41978 -25.02987 -23.73401 -22.17491 -21.76700 -20.94960 -20.69413 -19.10733 -18.78720 -18.11128 -17.93142 -17.47735 -16.94196 -16.60630 -16.52234 -16.24457 -15.87175 -15.47424 -15.07664 -14.92832 -14.67291 -14.51881 -14.36552 -14.10259 -13.95732 -13.53389 -13.52372 -13.40190 -13.32001 -13.18798 -12.89977 -12.69183 -12.60552 -12.29201 -11.99097 -11.82886 -11.78802 -11.71172 -11.40764 -11.30313 -11.26861 -10.68076 -10.59062 -10.22033 -9.71449 -9.40695 -8.81017 -7.79279 -5.13084 -0.41292 -0.31605 1.05195 1.32841 1.50185 1.51725 1.57972 1.67084 1.91020 2.54396 2.61322 3.00312 3.12434 3.29829 3.40000 3.44380 3.55603 3.62676 3.72411 3.86067 3.95947 4.04869 4.23484 4.29007 4.33555 4.37517 4.41214 4.47598 4.57125 4.58173 4.64134 4.74335 4.80997 4.90724 4.95880 5.07134 5.10524 5.14780 5.23691 5.34321 5.43923 5.55705 5.65128 5.69415 5.84784 6.25951 6.26186 6.43425 6.68350 7.00715 7.15893 7.85896 8.48105 9.30632 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003402 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.728856 B = 8227.614416 C = 9597.910630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.399 5.399 3 N -0.258 5.258 4 C 0.108 3.892 5 C -0.247 4.247 6 C 0.047 3.953 7 C -0.235 4.235 8 C 0.583 3.417 9 O -0.576 6.576 10 N -0.603 5.603 11 C 0.125 3.875 12 C -0.113 4.113 13 H 0.113 0.887 14 C 0.196 3.804 15 N -0.623 5.623 16 C -0.233 4.233 17 H 0.087 0.913 18 C -0.066 4.066 19 N -0.951 5.951 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.303 1.303 23 H -0.276 1.276 24 C 0.140 3.860 25 C -0.094 4.094 26 H 0.134 0.866 27 C 0.108 3.892 28 C 0.227 3.773 29 N -0.516 5.516 30 C 0.311 3.689 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.167 0.833 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.004 0.996 39 H 0.014 0.986 40 H 0.243 0.757 41 H 0.055 0.945 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.724 3.293 9.748 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.189 5.189 3 N -0.070 5.070 4 C -0.090 4.090 5 C -0.257 4.257 6 C 0.019 3.981 7 C -0.242 4.242 8 C 0.373 3.627 9 O -0.457 6.457 10 N -0.334 5.334 11 C 0.003 3.997 12 C -0.132 4.132 13 H 0.131 0.869 14 C 0.071 3.929 15 N -0.350 5.350 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.259 4.259 19 N -0.601 5.601 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.230 1.230 23 H -0.202 1.202 24 C 0.015 3.985 25 C -0.113 4.113 26 H 0.151 0.849 27 C -0.014 4.014 28 C 0.057 3.943 29 N -0.230 5.230 30 C 0.071 3.929 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.256 0.744 35 H 0.184 0.816 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.032 0.968 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -19.780 3.580 9.316 22.155 hybrid contribution 2.281 -0.089 -1.243 2.599 sum -17.499 3.491 8.073 19.585 Atomic orbital electron populations 1.22099 0.71530 1.05657 1.04320 1.48480 1.07531 0.99585 1.63313 1.76742 1.03302 1.07483 1.19438 1.25779 0.95436 0.92167 0.95654 1.20657 0.93619 0.95793 1.15640 1.21986 1.00501 0.90179 0.85410 1.20438 0.95198 0.93566 1.15030 1.17747 0.81046 0.86782 0.77102 1.90752 1.81497 1.24096 1.49372 1.48165 1.09128 1.18412 1.57692 1.21740 0.84238 0.93470 1.00273 1.23000 0.95548 0.97384 0.97315 0.86876 1.21008 0.95252 0.83442 0.93181 1.44795 1.62994 1.06207 1.21016 1.19405 1.25634 0.90914 1.00251 0.89483 1.25549 1.02578 0.98437 0.99306 1.70175 1.50034 1.19211 1.20665 0.85266 0.78687 0.78537 0.77545 1.20448 1.22954 1.20156 1.21380 0.93248 0.96621 0.87281 1.23018 0.93185 0.94894 1.00207 0.84852 1.22515 0.97394 0.85582 0.95875 1.22980 0.85883 0.99084 0.86377 1.66817 1.37110 0.98658 1.20463 1.19483 0.89633 0.88557 0.95195 0.90164 0.88517 0.87606 0.74378 0.81565 0.90112 0.93565 0.97777 0.96767 0.94802 0.92665 0.95405 0.91444 0.88008 0.79630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 11.43 127.77 1.46 2.89 16 2 N -0.40 -8.70 4.03 -366.44 -1.48 -10.17 16 3 N -0.26 -5.56 12.39 -53.08 -0.66 -6.22 16 4 C 0.11 2.03 12.30 86.94 1.07 3.10 16 5 C -0.25 -5.71 6.36 -20.24 -0.13 -5.83 16 6 C 0.05 1.11 8.33 22.92 0.19 1.31 16 7 C -0.23 -6.22 5.69 -20.00 -0.11 -6.33 16 8 C 0.58 18.37 7.64 86.74 0.66 19.03 16 9 O -0.58 -21.61 16.92 -3.95 -0.07 -21.67 16 10 N -0.60 -18.07 3.31 -820.60 -2.72 -20.78 16 11 C 0.13 4.00 6.25 86.59 0.54 4.54 16 12 C -0.11 -3.60 3.97 -9.49 -0.04 -3.64 16 13 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.20 8.90 4.83 86.34 0.42 9.32 16 15 N -0.62 -28.55 3.40 -694.67 -2.36 -30.91 16 16 C -0.23 -12.02 10.25 84.03 0.86 -11.16 16 17 H 0.09 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.07 -3.58 5.48 84.86 0.47 -3.12 16 19 N -0.95 -55.70 10.25 21.65 0.22 -55.48 16 20 Si 0.97 44.20 29.55 68.60 2.03 46.22 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.14 4.61 6.37 86.65 0.55 5.16 16 25 C -0.09 -2.44 4.19 -9.25 -0.04 -2.48 16 26 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 27 C 0.11 2.75 4.33 86.72 0.38 3.12 16 28 C 0.23 5.67 10.73 85.26 0.92 6.58 16 29 N -0.52 -13.09 10.37 -191.96 -1.99 -15.08 16 30 C 0.31 7.74 7.96 134.18 1.07 8.81 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.24 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.17 3.73 4.50 -2.91 -0.01 3.72 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.74 7.42 -2.39 -0.02 1.73 16 38 H 0.00 0.21 7.51 -2.39 -0.02 0.19 16 39 H 0.01 0.75 6.48 -2.39 -0.02 0.73 16 40 H 0.24 14.13 8.31 -92.70 -0.77 13.36 16 41 H 0.06 1.66 7.95 -2.38 -0.02 1.64 16 42 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 1.97 5.99 -2.39 -0.01 1.95 16 44 H 0.10 1.96 7.13 -2.39 -0.02 1.94 16 45 H 0.19 4.11 7.83 -2.91 -0.02 4.09 16 Total: -1.00 -73.37 363.65 2.27 -71.10 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.03 Total: 11.69 kcal Atomic # 6 Polarization: 23.05 SS G_CDS: 8.26 Total: 31.30 kcal Atomic # 7 Polarization: -129.67 SS G_CDS: -8.98 Total: -138.65 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.37 2.27 -71.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049131734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.682 kcal (2) G-P(sol) polarization free energy of solvation -73.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds