Wall clock time and date at job start Wed Apr 1 2020 01:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28815 * 125.94033 * 2 1 4 4 N 1.28644 * 111.79291 * 180.02562 * 3 2 1 5 5 C 1.34752 * 109.29288 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.59299 * 179.97438 * 5 4 3 7 7 C 1.36166 * 119.97617 * 179.68557 * 6 5 4 8 8 C 1.40256 * 120.55336 * 0.59263 * 7 6 5 9 9 C 1.47717 * 119.88103 * 179.69938 * 8 7 6 10 10 O 1.21573 * 120.00755 * 154.78806 * 9 8 7 11 11 N 1.34787 * 119.99800 * 334.78957 * 9 8 7 12 12 C 1.46755 * 125.33226 * 354.44547 * 11 9 8 13 13 C 1.53985 * 106.67738 * 198.44817 * 12 11 9 14 14 H 1.08997 * 112.25554 * 93.84117 * 13 12 11 15 15 C 1.53666 * 109.90500 * 220.93185 * 13 12 11 16 16 N 1.46662 * 107.97295 * 93.30590 * 15 13 12 17 17 C 1.36940 * 125.33429 * 179.29333 * 16 15 13 18 18 H 1.08002 * 120.00030 * 4.71247 * 17 16 15 19 19 C 1.38814 * 119.99799 * 184.71529 * 17 16 15 20 20 N 1.31619 * 120.00190 * 4.97010 * 19 17 16 21 21 Si 1.86797 * 119.99722 * 184.97117 * 19 17 16 22 22 H 1.48500 * 109.47178 * 84.99944 * 21 19 17 23 23 H 1.48504 * 109.47058 * 204.99863 * 21 19 17 24 24 H 1.48500 * 109.47394 * 324.99521 * 21 19 17 25 25 C 1.48708 * 109.51996 * 359.16193 * 16 15 13 26 26 C 1.53983 * 105.70235 * 18.56592 * 25 16 15 27 27 H 1.08995 * 112.79957 * 94.38378 * 26 25 16 28 28 C 1.46659 * 125.33246 * 174.44440 * 11 9 8 29 29 C 1.39167 * 120.24376 * 359.42701 * 8 7 6 30 30 C 1.37362 * 125.94565 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46785 * 269.96747 * 1 2 3 32 32 H 1.08992 * 109.47471 * 29.96693 * 1 2 3 33 33 H 1.08992 * 109.47225 * 149.97609 * 1 2 3 34 34 H 1.08001 * 120.01144 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.72443 * 180.31935 * 7 6 5 36 36 H 1.09001 * 110.01524 * 317.75090 * 12 11 9 37 37 H 1.09004 * 110.02049 * 79.14137 * 12 11 9 38 38 H 1.08998 * 109.77242 * 212.93465 * 15 13 12 39 39 H 1.09005 * 109.76757 * 333.68057 * 15 13 12 40 40 H 0.97000 * 120.00428 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.28608 * 259.68259 * 25 16 15 42 42 H 1.09003 * 110.69363 * 137.66356 * 25 16 15 43 43 H 1.08992 * 109.76647 * 59.66586 * 28 11 9 44 44 H 1.08995 * 109.76834 * 298.92355 * 28 11 9 45 45 H 1.07992 * 120.24987 * 180.29798 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2210 1.0429 0.0000 4 7 3.4684 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4456 -2.8456 0.0029 8 6 3.1370 -3.3502 -0.0023 9 6 2.9110 -4.8100 -0.0027 10 8 1.8749 -5.2650 0.4417 11 7 3.8537 -5.6376 -0.4957 12 6 5.0905 -5.2140 -1.1624 13 6 5.6065 -6.4314 -1.9515 14 1 5.2647 -6.4276 -2.9865 15 6 7.1337 -6.5339 -1.8157 16 7 7.4291 -7.4280 -0.6913 17 6 8.6829 -7.7790 -0.2667 18 1 9.5528 -7.3299 -0.7227 19 6 8.8355 -8.7120 0.7497 20 7 7.7819 -9.3314 1.2381 21 14 10.5363 -9.0883 1.4243 22 1 10.8823 -8.0978 2.4752 23 1 10.5462 -10.4536 2.0084 24 1 11.5325 -9.0128 0.3256 25 6 6.1564 -7.8938 -0.0793 26 6 5.0677 -7.6416 -1.1386 27 1 4.8702 -8.5165 -1.7579 28 6 3.8041 -7.1027 -0.4498 29 6 2.0504 -2.4806 -0.0014 30 6 2.2713 -1.1120 -0.0005 31 1 -0.3633 -0.0006 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3633 -0.8897 -0.5142 34 1 5.6810 -1.1236 -0.0037 35 1 5.2826 -3.5281 0.0071 36 1 4.8833 -4.3885 -1.8434 37 1 5.8290 -4.9098 -0.4206 38 1 7.5589 -6.9419 -2.7326 39 1 7.5537 -5.5468 -1.6219 40 1 7.8886 -9.9837 1.9481 41 1 5.9392 -7.3216 0.8226 42 1 6.2087 -8.9568 0.1563 43 1 2.9178 -7.4581 -0.9752 44 1 3.7777 -7.4383 0.5869 45 1 1.0428 -2.8690 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049194538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:44 Heat of formation + Delta-G solvation = 133.758293 kcal Electronic energy + Delta-G solvation = -29476.253289 eV Core-core repulsion = 25497.433891 eV Total energy + Delta-G solvation = -3978.819398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.44767 -40.56053 -38.62961 -37.42949 -35.18843 -35.05224 -32.44310 -31.41582 -31.09332 -29.96308 -29.53123 -28.26004 -26.01845 -25.69067 -24.49038 -23.83840 -22.63843 -21.42379 -20.31546 -19.97193 -19.39144 -18.51641 -17.80074 -17.03360 -16.95323 -16.43005 -16.02386 -15.66531 -14.85764 -14.74443 -14.61384 -14.31491 -14.14341 -13.93248 -13.58659 -13.45000 -13.23937 -13.10157 -12.74451 -12.42486 -12.29279 -12.16133 -12.02676 -11.79313 -11.54044 -11.38337 -11.09177 -11.00514 -10.98376 -10.84713 -10.54672 -10.16877 -10.11081 -9.96546 -9.85263 -9.57030 -9.21864 -8.74379 -8.69301 -8.44974 -6.90423 -5.69351 -3.14626 0.09045 0.92541 1.81021 1.87167 2.74894 2.97011 3.37374 3.42562 3.44157 3.47557 3.67585 4.07229 4.29289 4.34390 4.44095 4.53948 4.70114 4.72620 4.77101 4.82601 4.85355 5.00170 5.11257 5.23284 5.44642 5.45619 5.51787 5.56822 5.62852 5.70205 5.74237 5.88617 5.91653 5.99712 6.10457 6.15581 6.16742 6.24620 6.30711 6.45213 6.48728 6.58270 6.76931 7.35554 7.54843 7.59619 7.78262 8.01606 8.10737 8.27829 9.14171 9.76620 10.38655 11.32127 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002650 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.351935 B =10565.152857 C =11316.301725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.317 5.317 3 N -0.019 5.019 4 N -0.257 5.257 5 C 0.027 3.973 6 C -0.054 4.054 7 C -0.102 4.102 8 C -0.091 4.091 9 C 0.572 3.428 10 O -0.540 6.540 11 N -0.599 5.599 12 C 0.103 3.897 13 C -0.109 4.109 14 H 0.089 0.911 15 C 0.148 3.852 16 N -0.603 5.603 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.156 3.844 26 C -0.120 4.120 27 H 0.094 0.906 28 C 0.119 3.881 29 C -0.040 4.040 30 C 0.013 3.987 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.016 0.984 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 14.247 -5.629 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.118 5.118 3 N 0.001 4.999 4 N -0.131 5.131 5 C -0.099 4.099 6 C -0.076 4.076 7 C -0.123 4.123 8 C -0.098 4.098 9 C 0.361 3.639 10 O -0.419 6.419 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.129 4.129 14 H 0.108 0.892 15 C 0.021 3.979 16 N -0.330 5.330 17 C -0.354 4.354 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.032 3.968 26 C -0.140 4.140 27 H 0.112 0.888 28 C -0.003 4.003 29 C -0.063 4.063 30 C -0.106 4.106 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.538 15.453 -5.209 21.846 hybrid contribution 0.611 -1.173 0.434 1.392 sum -13.927 14.279 -4.775 20.510 Atomic orbital electron populations 1.22267 0.71984 1.06022 1.05152 1.47102 1.08830 1.02986 1.52878 1.77983 0.96975 1.12323 1.12653 1.75366 1.07483 1.11370 1.18871 1.20116 0.93264 0.91157 1.05329 1.19996 0.97688 0.90963 0.98920 1.21628 0.97041 0.95654 0.97946 1.19711 0.93438 0.93043 1.03564 1.17664 0.82663 0.85229 0.78337 1.90781 1.26056 1.77480 1.47580 1.48127 1.20632 1.07497 1.56849 1.22525 0.85748 0.97860 0.95795 1.22835 0.97491 0.94013 0.98560 0.89226 1.21018 0.90521 0.94246 0.92070 1.44718 1.02520 1.53004 1.32751 1.19051 0.82862 1.18489 1.14953 0.90418 1.24784 0.97525 0.98730 0.99478 1.69725 1.27020 1.29874 1.30260 0.86098 0.83189 0.77354 0.78876 1.21584 1.21685 1.20724 1.22155 0.81154 1.03375 0.90094 1.23222 0.95101 0.97038 0.98634 0.88768 1.21842 0.98374 0.78278 1.01787 1.19966 1.00031 0.87650 0.98613 1.19574 0.91059 0.90728 1.09201 0.89018 0.87785 0.88262 0.83604 0.82484 0.90776 0.90100 0.95549 0.95645 0.93634 0.96593 0.87184 0.91870 0.90675 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.40 59.84 0.68 1.08 16 2 N -0.32 -3.18 3.80 -65.55 -0.25 -3.43 16 3 N -0.02 -0.23 13.07 60.35 0.79 0.56 16 4 N -0.26 -3.54 12.42 32.09 0.40 -3.14 16 5 C 0.03 0.35 7.36 -84.95 -0.63 -0.28 16 6 C -0.05 -0.60 10.03 -39.70 -0.40 -0.99 16 7 C -0.10 -1.17 8.09 -39.57 -0.32 -1.49 16 8 C -0.09 -1.15 5.67 -104.92 -0.59 -1.74 16 9 C 0.57 8.67 7.61 -12.38 -0.09 8.57 16 10 O -0.54 -9.63 16.90 5.30 0.09 -9.54 16 11 N -0.60 -8.89 3.31 -173.49 -0.57 -9.46 16 12 C 0.10 1.38 4.32 -3.39 -0.01 1.37 16 13 C -0.11 -1.62 4.06 -88.47 -0.36 -1.98 16 14 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 15 C 0.15 2.70 6.61 -3.61 -0.02 2.68 16 16 N -0.60 -14.18 3.43 -170.29 -0.58 -14.76 16 17 C -0.23 -5.92 10.24 -15.06 -0.15 -6.08 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.25 5.47 -17.43 -0.10 -0.35 16 20 N -0.92 -25.72 10.08 55.49 0.56 -25.16 16 21 Si 0.91 21.38 29.56 -169.99 -5.02 16.36 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.16 3.46 5.28 -2.31 -0.01 3.45 16 26 C -0.12 -2.01 4.04 -88.47 -0.36 -2.37 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 C 0.12 1.87 6.20 -3.61 -0.02 1.85 16 29 C -0.04 -0.45 9.59 -39.09 -0.37 -0.83 16 30 C 0.01 0.15 6.94 -84.23 -0.58 -0.44 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.16 1.74 4.41 -52.49 -0.23 1.51 16 36 H 0.07 0.82 7.17 -51.93 -0.37 0.44 16 37 H 0.08 1.16 5.81 -51.93 -0.30 0.85 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 42 H 0.11 2.81 5.81 -51.93 -0.30 2.51 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.29 7.62 -51.93 -0.40 0.89 16 45 H 0.14 1.41 7.83 -52.49 -0.41 1.00 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -33.04 361.88 -8.22 -41.26 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.73 Total: -0.59 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.35 Total: 2.46 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.34 Total: -55.40 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.04 -8.22 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049194538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.021 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds