Wall clock time and date at job start Wed Apr 1 2020 01:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28815 * 125.94033 * 2 1 4 4 N 1.28644 * 111.79291 * 180.02562 * 3 2 1 5 5 C 1.34752 * 109.29288 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.59299 * 179.97438 * 5 4 3 7 7 C 1.36166 * 119.97617 * 179.68557 * 6 5 4 8 8 C 1.40256 * 120.55336 * 0.59263 * 7 6 5 9 9 C 1.47717 * 119.88103 * 179.69938 * 8 7 6 10 10 O 1.21573 * 120.00755 * 154.78806 * 9 8 7 11 11 N 1.34787 * 119.99800 * 334.78957 * 9 8 7 12 12 C 1.46755 * 125.33226 * 354.44547 * 11 9 8 13 13 C 1.53985 * 106.67738 * 198.44817 * 12 11 9 14 14 H 1.08997 * 112.25554 * 93.84117 * 13 12 11 15 15 C 1.53666 * 109.90500 * 220.93185 * 13 12 11 16 16 N 1.46662 * 107.97295 * 93.30590 * 15 13 12 17 17 C 1.36940 * 125.33429 * 179.29333 * 16 15 13 18 18 H 1.08002 * 120.00030 * 4.71247 * 17 16 15 19 19 C 1.38814 * 119.99799 * 184.71529 * 17 16 15 20 20 N 1.31619 * 120.00190 * 4.97010 * 19 17 16 21 21 Si 1.86797 * 119.99722 * 184.97117 * 19 17 16 22 22 H 1.48500 * 109.47178 * 84.99944 * 21 19 17 23 23 H 1.48504 * 109.47058 * 204.99863 * 21 19 17 24 24 H 1.48500 * 109.47394 * 324.99521 * 21 19 17 25 25 C 1.48708 * 109.51996 * 359.16193 * 16 15 13 26 26 C 1.53983 * 105.70235 * 18.56592 * 25 16 15 27 27 H 1.08995 * 112.79957 * 94.38378 * 26 25 16 28 28 C 1.46659 * 125.33246 * 174.44440 * 11 9 8 29 29 C 1.39167 * 120.24376 * 359.42701 * 8 7 6 30 30 C 1.37362 * 125.94565 * 180.02562 * 2 1 3 31 31 H 1.09006 * 109.46785 * 269.96747 * 1 2 3 32 32 H 1.08992 * 109.47471 * 29.96693 * 1 2 3 33 33 H 1.08992 * 109.47225 * 149.97609 * 1 2 3 34 34 H 1.08001 * 120.01144 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.72443 * 180.31935 * 7 6 5 36 36 H 1.09001 * 110.01524 * 317.75090 * 12 11 9 37 37 H 1.09004 * 110.02049 * 79.14137 * 12 11 9 38 38 H 1.08998 * 109.77242 * 212.93465 * 15 13 12 39 39 H 1.09005 * 109.76757 * 333.68057 * 15 13 12 40 40 H 0.97000 * 120.00428 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.28608 * 259.68259 * 25 16 15 42 42 H 1.09003 * 110.69363 * 137.66356 * 25 16 15 43 43 H 1.08992 * 109.76647 * 59.66586 * 28 11 9 44 44 H 1.08995 * 109.76834 * 298.92355 * 28 11 9 45 45 H 1.07992 * 120.24987 * 180.29798 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2210 1.0429 0.0000 4 7 3.4684 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4456 -2.8456 0.0029 8 6 3.1370 -3.3502 -0.0023 9 6 2.9110 -4.8100 -0.0027 10 8 1.8749 -5.2650 0.4417 11 7 3.8537 -5.6376 -0.4957 12 6 5.0905 -5.2140 -1.1624 13 6 5.6065 -6.4314 -1.9515 14 1 5.2647 -6.4276 -2.9865 15 6 7.1337 -6.5339 -1.8157 16 7 7.4291 -7.4280 -0.6913 17 6 8.6829 -7.7790 -0.2667 18 1 9.5528 -7.3299 -0.7227 19 6 8.8355 -8.7120 0.7497 20 7 7.7819 -9.3314 1.2381 21 14 10.5363 -9.0883 1.4243 22 1 10.8823 -8.0978 2.4752 23 1 10.5462 -10.4536 2.0084 24 1 11.5325 -9.0128 0.3256 25 6 6.1564 -7.8938 -0.0793 26 6 5.0677 -7.6416 -1.1386 27 1 4.8702 -8.5165 -1.7579 28 6 3.8041 -7.1027 -0.4498 29 6 2.0504 -2.4806 -0.0014 30 6 2.2713 -1.1120 -0.0005 31 1 -0.3633 -0.0006 1.0277 32 1 -0.3634 0.8902 -0.5133 33 1 -0.3633 -0.8897 -0.5142 34 1 5.6810 -1.1236 -0.0037 35 1 5.2826 -3.5281 0.0071 36 1 4.8833 -4.3885 -1.8434 37 1 5.8290 -4.9098 -0.4206 38 1 7.5589 -6.9419 -2.7326 39 1 7.5537 -5.5468 -1.6219 40 1 7.8886 -9.9837 1.9481 41 1 5.9392 -7.3216 0.8226 42 1 6.2087 -8.9568 0.1563 43 1 2.9178 -7.4581 -0.9752 44 1 3.7777 -7.4383 0.5869 45 1 1.0428 -2.8690 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049194538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:43 Heat of formation + Delta-G solvation = 112.324080 kcal Electronic energy + Delta-G solvation = -29477.182747 eV Core-core repulsion = 25497.433891 eV Total energy + Delta-G solvation = -3979.748856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.30954 -41.75725 -39.88167 -38.46187 -36.60349 -35.94389 -34.13834 -32.60849 -31.95560 -31.17437 -31.09685 -28.87470 -27.53239 -27.11257 -25.76317 -24.83009 -23.87163 -22.22341 -21.93631 -21.06246 -20.72858 -19.54329 -18.85074 -18.53164 -17.84529 -17.67488 -17.09151 -16.87128 -16.46447 -15.82449 -15.73442 -15.58283 -15.32848 -15.03046 -14.65756 -14.45606 -14.34844 -14.09718 -13.83227 -13.63069 -13.46240 -13.27488 -13.19288 -13.12042 -13.00927 -12.75496 -12.69272 -12.56912 -11.98529 -11.91354 -11.85687 -11.82152 -11.77043 -11.41764 -11.24457 -11.13622 -10.72708 -10.15261 -9.75397 -9.43805 -8.81942 -7.70538 -5.17036 -0.81522 0.04298 0.94321 1.12907 1.50098 1.51171 1.58930 1.69107 1.86240 2.52134 2.53506 2.81274 3.23095 3.36671 3.42387 3.51781 3.54740 3.57955 3.86070 3.89176 3.92748 3.98218 4.16770 4.26224 4.31348 4.34208 4.42025 4.55718 4.56989 4.57961 4.72323 4.76363 4.81982 4.87610 4.93021 5.03241 5.07590 5.12347 5.15349 5.23248 5.39228 5.43605 5.48585 5.52552 5.65445 5.89729 6.35826 6.39282 6.93795 7.12947 7.15023 7.84258 8.46088 9.28214 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.002650 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.351935 B =10565.152857 C =11316.301725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.303 5.303 3 N -0.028 5.028 4 N -0.289 5.289 5 C 0.013 3.987 6 C -0.053 4.053 7 C -0.096 4.096 8 C -0.104 4.104 9 C 0.574 3.426 10 O -0.573 6.573 11 N -0.600 5.600 12 C 0.106 3.894 13 C -0.094 4.094 14 H 0.127 0.873 15 C 0.141 3.859 16 N -0.625 5.625 17 C -0.231 4.231 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.948 5.948 21 Si 0.973 3.027 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.269 1.269 25 C 0.164 3.836 26 C -0.109 4.109 27 H 0.106 0.894 28 C 0.125 3.875 29 C -0.026 4.026 30 C 0.005 3.995 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.244 0.756 41 H -0.014 1.014 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.850 15.857 -7.328 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.105 5.105 3 N -0.009 5.009 4 N -0.163 5.163 5 C -0.113 4.113 6 C -0.075 4.075 7 C -0.117 4.117 8 C -0.111 4.111 9 C 0.364 3.636 10 O -0.454 6.454 11 N -0.331 5.331 12 C -0.016 4.016 13 C -0.114 4.114 14 H 0.145 0.855 15 C 0.016 3.984 16 N -0.351 5.351 17 C -0.361 4.361 18 H 0.101 0.899 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.803 3.197 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.194 1.194 25 C 0.040 3.960 26 C -0.129 4.129 27 H 0.124 0.876 28 C 0.002 3.998 29 C -0.048 4.048 30 C -0.114 4.114 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.003 0.997 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.394 17.110 -6.949 24.042 hybrid contribution 0.800 -1.605 0.964 2.036 sum -14.595 15.505 -5.985 22.119 Atomic orbital electron populations 1.22807 0.68984 1.08077 1.06936 1.47552 1.10384 1.01949 1.50580 1.77908 0.97012 1.13108 1.12834 1.75332 1.08298 1.12067 1.20566 1.20444 0.94356 0.91140 1.05386 1.20154 0.98299 0.90577 0.98493 1.21583 0.96598 0.95748 0.97808 1.19545 0.94394 0.91583 1.05566 1.17984 0.82050 0.86118 0.77446 1.90760 1.27396 1.78228 1.48981 1.48152 1.21050 1.07022 1.56900 1.22589 0.84884 0.98197 0.95897 1.22855 0.94838 0.93240 1.00429 0.85495 1.21241 0.93190 0.93658 0.90310 1.45015 1.02027 1.53924 1.34165 1.19430 0.84430 1.17697 1.14505 0.89889 1.25552 1.00596 0.99405 1.00466 1.70004 1.28584 1.30537 1.30648 0.85160 0.79895 0.76393 0.78297 1.21700 1.22492 1.19359 1.21813 0.82841 1.00378 0.90985 1.23006 0.93730 0.98698 0.97499 0.87577 1.21676 0.98392 0.79171 1.00513 1.20037 1.00390 0.87319 0.97079 1.19630 0.91090 0.91085 1.09625 0.87309 0.85865 0.86218 0.81910 0.82189 0.87358 0.91123 0.95022 0.94281 0.94589 0.99652 0.91033 0.90137 0.93046 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.40 127.77 1.46 1.90 16 2 N -0.30 -5.43 3.80 -361.30 -1.37 -6.80 16 3 N -0.03 -0.65 13.07 37.02 0.48 -0.16 16 4 N -0.29 -7.70 12.42 -52.38 -0.65 -8.35 16 5 C 0.01 0.32 7.36 39.75 0.29 0.61 16 6 C -0.05 -1.10 10.03 22.19 0.22 -0.88 16 7 C -0.10 -2.03 8.09 22.28 0.18 -1.85 16 8 C -0.10 -2.44 5.67 -20.06 -0.11 -2.56 16 9 C 0.57 16.60 7.61 86.75 0.66 17.26 16 10 O -0.57 -19.93 16.90 -3.95 -0.07 -19.99 16 11 N -0.60 -16.88 3.31 -821.07 -2.72 -19.60 16 12 C 0.11 2.57 4.32 86.66 0.37 2.94 16 13 C -0.09 -2.53 4.06 -9.40 -0.04 -2.57 16 14 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 15 C 0.14 4.88 6.61 86.57 0.57 5.45 16 16 N -0.62 -29.42 3.43 -692.68 -2.37 -31.79 16 17 C -0.23 -12.24 10.24 84.03 0.86 -11.38 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -3.71 5.47 84.86 0.46 -3.25 16 20 N -0.95 -55.03 10.08 21.65 0.22 -54.81 16 21 Si 0.97 44.62 29.56 68.60 2.03 46.65 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.16 7.49 5.28 86.29 0.46 7.94 16 26 C -0.11 -3.56 4.04 -9.40 -0.04 -3.60 16 27 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 28 C 0.13 3.84 6.20 86.58 0.54 4.38 16 29 C -0.03 -0.53 9.59 22.59 0.22 -0.31 16 30 C 0.00 0.10 6.94 39.02 0.27 0.37 16 31 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.16 3.26 4.41 -2.91 -0.01 3.25 16 36 H 0.11 1.95 7.17 -2.39 -0.02 1.93 16 37 H 0.07 1.90 5.81 -2.39 -0.01 1.88 16 38 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.04 1.27 7.66 -2.38 -0.02 1.25 16 40 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 41 H -0.01 -0.73 7.57 -2.39 -0.02 -0.75 16 42 H 0.07 3.84 5.81 -2.39 -0.01 3.83 16 43 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.82 7.62 -2.39 -0.02 1.80 16 45 H 0.16 2.71 7.83 -2.91 -0.02 2.69 16 Total: -1.00 -74.04 361.88 2.95 -71.09 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.03 Total: 9.30 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 6.37 Total: 14.47 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.42 Total: -121.51 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -19.99 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.04 2.95 -71.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049194538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.410 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds