Wall clock time and date at job start Wed Apr 1 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40255 * 126.66347 * 2 1 4 4 N 1.28669 * 109.42066 * 179.47856 * 3 2 1 5 5 C 1.35401 * 110.10167 * 0.64689 * 4 3 2 6 6 C 1.40111 * 133.02461 * 179.27566 * 5 4 3 7 7 C 1.37607 * 120.15346 * 179.97438 * 6 5 4 8 8 C 1.38483 * 120.79795 * 0.02562 * 7 6 5 9 9 C 1.39212 * 120.27720 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.24619 * 179.97438 * 9 8 7 11 11 O 1.21598 * 120.00052 * 133.39558 * 10 9 8 12 12 N 1.34772 * 119.99979 * 313.39245 * 10 9 8 13 13 C 1.46657 * 125.33689 * 174.83836 * 12 10 9 14 14 C 1.53673 * 107.97599 * 179.29362 * 13 12 10 15 15 H 1.08999 * 113.31565 * 106.33020 * 14 13 12 16 16 C 1.53980 * 109.29619 * 233.06262 * 14 13 12 17 17 N 1.46758 * 106.67769 * 82.34245 * 16 14 13 18 18 C 1.36937 * 125.33561 * 198.42726 * 17 16 14 19 19 H 1.08003 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99870 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99805 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47048 * 90.00154 * 22 20 18 24 24 H 1.48503 * 109.46789 * 209.99936 * 22 20 18 25 25 H 1.48495 * 109.47133 * 329.99846 * 22 20 18 26 26 C 1.46666 * 109.32883 * 18.44736 * 17 16 14 27 27 C 1.53674 * 107.97028 * 359.29226 * 26 17 16 28 28 H 1.09001 * 112.77222 * 106.02066 * 27 26 17 29 29 C 1.46757 * 125.33379 * 354.84393 * 12 10 9 30 30 C 1.36979 * 126.66348 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47342 * 264.18233 * 1 2 3 32 32 H 1.09007 * 109.47210 * 24.17725 * 1 2 3 33 33 H 1.09000 * 109.47371 * 144.17829 * 1 2 3 34 34 H 1.08002 * 119.92750 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.60063 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.86410 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.76535 * 59.66115 * 13 12 10 38 38 H 1.09007 * 109.76827 * 298.92978 * 13 12 10 39 39 H 1.08999 * 110.02100 * 323.03556 * 16 14 13 40 40 H 1.09005 * 110.01348 * 201.64523 * 16 14 13 41 41 H 0.97003 * 119.99938 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.76362 * 239.66270 * 26 17 16 43 43 H 1.08995 * 109.76729 * 118.92281 * 26 17 16 44 44 H 1.08998 * 110.02133 * 79.14344 * 29 12 10 45 45 H 1.09000 * 110.01819 * 317.75178 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1251 0.0000 4 7 3.5313 0.7437 0.0110 5 6 3.5989 -0.6086 0.0045 6 6 4.6697 -1.5122 -0.0019 7 6 4.4306 -2.8673 -0.0072 8 6 3.1359 -3.3589 -0.0070 9 6 2.0530 -2.4841 -0.0018 10 6 0.6740 -3.0085 -0.0021 11 8 -0.1503 -2.5516 0.7662 12 7 0.3280 -3.9939 -0.8539 13 6 -0.9712 -4.6736 -0.8819 14 6 -0.9395 -5.7108 -2.0153 15 1 -0.8624 -6.7378 -1.6582 16 6 -2.1499 -5.4901 -2.9411 17 7 -1.7815 -4.4122 -3.8663 18 6 -2.6616 -3.6667 -4.6046 19 1 -2.2946 -2.8919 -5.2613 20 6 -4.0253 -3.9070 -4.5087 21 7 -4.4725 -4.8517 -3.7087 22 14 -5.2258 -2.8906 -5.5163 23 1 -5.4537 -3.5498 -6.8274 24 1 -6.5147 -2.7804 -4.7870 25 1 -4.6634 -1.5339 -5.7355 26 6 -0.3229 -4.2587 -3.8768 27 6 0.2684 -5.2813 -2.8938 28 1 0.7493 -6.1204 -3.3964 29 6 1.1924 -4.5550 -1.8988 30 6 2.2829 -1.0988 -0.0005 31 1 -0.3634 -0.1042 1.0224 32 1 -0.3634 0.9376 -0.4209 33 1 -0.3634 -0.8333 -0.6014 34 1 5.6852 -1.1444 -0.0025 35 1 5.2626 -3.5558 -0.0126 36 1 2.9656 -4.4253 -0.0117 37 1 -1.7629 -3.9479 -1.0684 38 1 -1.1463 -5.1736 0.0707 39 1 -3.0202 -5.1968 -2.3540 40 1 -2.3651 -6.4023 -3.4977 41 1 -5.4256 -5.0194 -3.6415 42 1 -0.0563 -3.2493 -3.5636 43 1 0.0604 -4.4470 -4.8796 44 1 1.8973 -5.2614 -1.4604 45 1 1.7319 -3.7552 -2.4061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049255596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:46 Heat of formation + Delta-G solvation = 123.337762 kcal Electronic energy + Delta-G solvation = -30452.683291 eV Core-core repulsion = 26473.412025 eV Total energy + Delta-G solvation = -3979.271267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30132 -40.37360 -38.49123 -37.45432 -35.10736 -34.59945 -32.45108 -31.30265 -30.52077 -30.06369 -29.70011 -27.55317 -25.91535 -25.57456 -24.54475 -23.21439 -22.84727 -21.75070 -20.15029 -19.51337 -19.43642 -18.27070 -17.37745 -16.93152 -16.58203 -16.35728 -15.96936 -15.73360 -15.38381 -14.84654 -14.75526 -14.09467 -13.77098 -13.52946 -13.37699 -13.17542 -13.04452 -12.81406 -12.64470 -12.43900 -12.23180 -12.16471 -12.02844 -11.89817 -11.59248 -11.44840 -11.25115 -11.02456 -10.87609 -10.79488 -10.51893 -10.18595 -10.09199 -9.96531 -9.88493 -9.69708 -9.13121 -8.72157 -8.58885 -8.42485 -6.92076 -5.76617 -3.15276 0.06497 1.01726 1.83289 1.98701 2.62598 2.97782 3.35033 3.38142 3.40778 3.42240 3.83409 4.24539 4.37014 4.41080 4.45519 4.57835 4.66832 4.85388 4.92722 5.07991 5.11925 5.23896 5.28836 5.37964 5.42428 5.51017 5.52830 5.60806 5.63345 5.66239 5.70175 5.83618 5.90360 5.95663 6.03362 6.20102 6.24694 6.29405 6.41333 6.43344 6.55962 6.62697 6.71882 7.35067 7.52447 7.55509 7.73315 7.81721 8.07986 8.23784 9.14396 9.74689 10.37054 11.29985 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003559 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.496903 B = 7866.044699 C = 8838.938663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 N -0.007 5.007 4 N -0.222 5.222 5 C -0.025 4.025 6 C -0.014 4.014 7 C -0.141 4.141 8 C -0.035 4.035 9 C -0.123 4.123 10 C 0.569 3.431 11 O -0.537 6.537 12 N -0.596 5.596 13 C 0.122 3.878 14 C -0.123 4.123 15 H 0.090 0.910 16 C 0.169 3.831 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.144 3.856 27 C -0.109 4.109 28 H 0.100 0.900 29 C 0.108 3.892 30 C 0.125 3.875 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.114 -0.534 7.852 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.172 5.172 3 N 0.013 4.987 4 N -0.100 5.100 5 C -0.150 4.150 6 C -0.037 4.037 7 C -0.163 4.163 8 C -0.057 4.057 9 C -0.130 4.130 10 C 0.357 3.643 11 O -0.415 6.415 12 N -0.328 5.328 13 C 0.000 4.000 14 C -0.143 4.143 15 H 0.108 0.892 16 C 0.044 3.956 17 N -0.326 5.326 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.018 3.982 27 C -0.129 4.129 28 H 0.118 0.882 29 C -0.015 4.015 30 C 0.001 3.999 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.363 1.380 8.271 18.386 hybrid contribution -0.898 -0.600 -0.640 1.256 sum 15.465 0.780 7.631 17.263 Atomic orbital electron populations 1.22260 0.71430 1.04951 1.05189 1.50133 1.08476 1.03022 1.55534 1.81652 0.93986 1.07747 1.15303 1.74859 1.11527 1.10138 1.13460 1.19898 0.92864 0.90375 1.11824 1.20597 0.97542 0.91390 0.94143 1.20907 0.96894 0.94749 1.03718 1.21375 0.91171 0.99681 0.93459 1.18829 0.94527 0.89416 1.10259 1.17657 0.86900 0.79081 0.80641 1.90808 1.51648 1.58441 1.40623 1.48173 1.16287 1.35576 1.32747 1.21937 0.84674 0.95068 0.98321 1.23215 0.98368 0.97461 0.95291 0.89194 1.21481 0.93112 0.90786 0.90188 1.44201 0.99283 1.39647 1.49459 1.19030 0.86789 1.11883 1.17794 0.90557 1.24765 0.96771 0.98849 0.99870 1.69843 1.13055 1.33527 1.40535 0.86102 0.80719 0.79493 0.79360 1.21545 1.21572 1.20726 1.21130 0.86456 0.95069 0.95530 1.22856 0.95569 0.98503 0.95940 0.88230 1.22128 0.93185 0.97551 0.88651 1.18986 0.91116 0.89192 1.00646 0.88978 0.88793 0.88605 0.83999 0.83832 0.83889 0.89929 0.92053 0.88473 0.96180 0.93624 0.96208 0.95955 0.91577 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.39 9.78 59.85 0.59 1.98 16 2 N -0.38 -5.70 4.10 -65.27 -0.27 -5.97 16 3 N -0.01 -0.11 13.72 60.35 0.83 0.72 16 4 N -0.22 -3.31 12.40 32.15 0.40 -2.91 16 5 C -0.03 -0.33 7.26 -84.76 -0.62 -0.95 16 6 C -0.01 -0.13 10.09 -39.11 -0.39 -0.53 16 7 C -0.14 -1.06 9.98 -39.72 -0.40 -1.45 16 8 C -0.03 -0.32 8.50 -39.13 -0.33 -0.66 16 9 C -0.12 -1.60 5.19 -104.92 -0.54 -2.15 16 10 C 0.57 8.75 6.31 -12.47 -0.08 8.67 16 11 O -0.54 -9.69 14.32 5.28 0.08 -9.61 16 12 N -0.60 -8.76 3.31 -173.56 -0.57 -9.34 16 13 C 0.12 2.01 6.24 -3.61 -0.02 1.99 16 14 C -0.12 -2.01 4.09 -88.48 -0.36 -2.37 16 15 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.17 3.75 4.84 -3.39 -0.02 3.74 16 17 N -0.60 -14.37 3.38 -171.88 -0.58 -14.95 16 18 C -0.23 -6.09 10.25 -15.06 -0.15 -6.24 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -25.80 10.16 55.49 0.56 -25.24 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.14 2.76 6.63 -3.60 -0.02 2.74 16 27 C -0.11 -1.59 4.09 -88.47 -0.36 -1.95 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 29 C 0.11 1.31 4.65 -3.39 -0.02 1.29 16 30 C 0.12 1.80 6.81 -83.92 -0.57 1.23 16 31 H 0.09 1.23 7.79 -51.93 -0.40 0.82 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.47 6.20 -51.93 -0.32 1.15 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.14 1.02 6.58 -52.49 -0.35 0.67 16 37 H 0.08 1.69 7.47 -51.93 -0.39 1.30 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 2.46 5.83 -51.93 -0.30 2.16 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.02 0.40 7.47 -51.93 -0.39 0.01 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.59 6.93 -51.93 -0.36 0.23 16 45 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -32.38 359.32 -8.39 -40.77 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.83 Total: -0.58 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.40 Total: 5.06 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.37 Total: -57.68 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.38 -8.39 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.110 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds