Wall clock time and date at job start Wed Apr 1 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40255 * 126.66347 * 2 1 4 4 N 1.28669 * 109.42066 * 179.47856 * 3 2 1 5 5 C 1.35401 * 110.10167 * 0.64689 * 4 3 2 6 6 C 1.40111 * 133.02461 * 179.27566 * 5 4 3 7 7 C 1.37607 * 120.15346 * 179.97438 * 6 5 4 8 8 C 1.38483 * 120.79795 * 0.02562 * 7 6 5 9 9 C 1.39212 * 120.27720 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.24619 * 179.97438 * 9 8 7 11 11 O 1.21598 * 120.00052 * 133.39558 * 10 9 8 12 12 N 1.34772 * 119.99979 * 313.39245 * 10 9 8 13 13 C 1.46657 * 125.33689 * 174.83836 * 12 10 9 14 14 C 1.53673 * 107.97599 * 179.29362 * 13 12 10 15 15 H 1.08999 * 113.31565 * 106.33020 * 14 13 12 16 16 C 1.53980 * 109.29619 * 233.06262 * 14 13 12 17 17 N 1.46758 * 106.67769 * 82.34245 * 16 14 13 18 18 C 1.36937 * 125.33561 * 198.42726 * 17 16 14 19 19 H 1.08003 * 119.99993 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99870 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99805 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47048 * 90.00154 * 22 20 18 24 24 H 1.48503 * 109.46789 * 209.99936 * 22 20 18 25 25 H 1.48495 * 109.47133 * 329.99846 * 22 20 18 26 26 C 1.46666 * 109.32883 * 18.44736 * 17 16 14 27 27 C 1.53674 * 107.97028 * 359.29226 * 26 17 16 28 28 H 1.09001 * 112.77222 * 106.02066 * 27 26 17 29 29 C 1.46757 * 125.33379 * 354.84393 * 12 10 9 30 30 C 1.36979 * 126.66348 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47342 * 264.18233 * 1 2 3 32 32 H 1.09007 * 109.47210 * 24.17725 * 1 2 3 33 33 H 1.09000 * 109.47371 * 144.17829 * 1 2 3 34 34 H 1.08002 * 119.92750 * 359.97438 * 6 5 4 35 35 H 1.07994 * 119.60063 * 179.97438 * 7 6 5 36 36 H 1.07999 * 119.86410 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.76535 * 59.66115 * 13 12 10 38 38 H 1.09007 * 109.76827 * 298.92978 * 13 12 10 39 39 H 1.08999 * 110.02100 * 323.03556 * 16 14 13 40 40 H 1.09005 * 110.01348 * 201.64523 * 16 14 13 41 41 H 0.97003 * 119.99938 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.76362 * 239.66270 * 26 17 16 43 43 H 1.08995 * 109.76729 * 118.92281 * 26 17 16 44 44 H 1.08998 * 110.02133 * 79.14344 * 29 12 10 45 45 H 1.09000 * 110.01819 * 317.75178 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1251 0.0000 4 7 3.5313 0.7437 0.0110 5 6 3.5989 -0.6086 0.0045 6 6 4.6697 -1.5122 -0.0019 7 6 4.4306 -2.8673 -0.0072 8 6 3.1359 -3.3589 -0.0070 9 6 2.0530 -2.4841 -0.0018 10 6 0.6740 -3.0085 -0.0021 11 8 -0.1503 -2.5516 0.7662 12 7 0.3280 -3.9939 -0.8539 13 6 -0.9712 -4.6736 -0.8819 14 6 -0.9395 -5.7108 -2.0153 15 1 -0.8624 -6.7378 -1.6582 16 6 -2.1499 -5.4901 -2.9411 17 7 -1.7815 -4.4122 -3.8663 18 6 -2.6616 -3.6667 -4.6046 19 1 -2.2946 -2.8919 -5.2613 20 6 -4.0253 -3.9070 -4.5087 21 7 -4.4725 -4.8517 -3.7087 22 14 -5.2258 -2.8906 -5.5163 23 1 -5.4537 -3.5498 -6.8274 24 1 -6.5147 -2.7804 -4.7870 25 1 -4.6634 -1.5339 -5.7355 26 6 -0.3229 -4.2587 -3.8768 27 6 0.2684 -5.2813 -2.8938 28 1 0.7493 -6.1204 -3.3964 29 6 1.1924 -4.5550 -1.8988 30 6 2.2829 -1.0988 -0.0005 31 1 -0.3634 -0.1042 1.0224 32 1 -0.3634 0.9376 -0.4209 33 1 -0.3634 -0.8333 -0.6014 34 1 5.6852 -1.1444 -0.0025 35 1 5.2626 -3.5558 -0.0126 36 1 2.9656 -4.4253 -0.0117 37 1 -1.7629 -3.9479 -1.0684 38 1 -1.1463 -5.1736 0.0707 39 1 -3.0202 -5.1968 -2.3540 40 1 -2.3651 -6.4023 -3.4977 41 1 -5.4256 -5.0194 -3.6415 42 1 -0.0563 -3.2493 -3.5636 43 1 0.0604 -4.4470 -4.8796 44 1 1.8973 -5.2614 -1.4604 45 1 1.7319 -3.7552 -2.4061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049255596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:45 Heat of formation + Delta-G solvation = 100.988545 kcal Electronic energy + Delta-G solvation = -30453.652426 eV Core-core repulsion = 26473.412025 eV Total energy + Delta-G solvation = -3980.240401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.27025 -41.59135 -39.76784 -38.34496 -36.65234 -35.64722 -34.15629 -32.46722 -31.44963 -31.29958 -31.21856 -28.63647 -27.50032 -27.02635 -25.68160 -24.52671 -23.71877 -22.89903 -21.76667 -20.86504 -20.50098 -19.29219 -18.84619 -18.17087 -17.75767 -17.49184 -17.12056 -16.80673 -16.65132 -16.40422 -15.84560 -15.52916 -15.18494 -14.61656 -14.58283 -14.51229 -14.32460 -13.94604 -13.76854 -13.57092 -13.47303 -13.39423 -13.17035 -13.03732 -12.98768 -12.90500 -12.76201 -12.61159 -12.28137 -12.05281 -11.90942 -11.78917 -11.70672 -11.51122 -11.38119 -11.06826 -10.73417 -10.02162 -9.71766 -9.37766 -8.88203 -7.83786 -5.23293 -0.79902 0.15905 0.86349 0.98872 1.42274 1.43136 1.51405 1.53041 1.90374 2.45581 2.55118 2.93268 3.27057 3.31057 3.38074 3.44285 3.62017 3.68386 3.77922 3.85247 3.95864 4.10870 4.12033 4.22915 4.26262 4.31674 4.44817 4.53356 4.58594 4.63187 4.68882 4.80284 4.83919 4.87602 4.92959 5.04120 5.15367 5.18591 5.23848 5.25268 5.34690 5.37952 5.45589 5.60497 5.66201 5.81907 6.27347 6.41624 6.79137 6.94420 7.10602 7.79309 8.38671 9.20129 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003559 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.496903 B = 7866.044699 C = 8838.938663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.392 5.392 3 N -0.039 5.039 4 N -0.233 5.233 5 C -0.043 4.043 6 C -0.008 4.008 7 C -0.119 4.119 8 C -0.009 4.009 9 C -0.153 4.153 10 C 0.567 3.433 11 O -0.578 6.578 12 N -0.597 5.597 13 C 0.130 3.870 14 C -0.107 4.107 15 H 0.128 0.872 16 C 0.174 3.826 17 N -0.622 5.622 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.059 4.059 21 N -0.944 5.944 22 Si 0.971 3.029 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.137 3.863 27 C -0.094 4.094 28 H 0.139 0.861 29 C 0.110 3.890 30 C 0.102 3.898 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.174 0.826 35 H 0.197 0.803 36 H 0.177 0.823 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.056 0.944 40 H -0.005 1.005 41 H 0.247 0.753 42 H 0.006 0.994 43 H 0.026 0.974 44 H 0.122 0.878 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.528 -2.796 7.964 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.186 5.186 3 N -0.018 5.018 4 N -0.110 5.110 5 C -0.169 4.169 6 C -0.030 4.030 7 C -0.140 4.140 8 C -0.030 4.030 9 C -0.161 4.161 10 C 0.357 3.643 11 O -0.459 6.459 12 N -0.328 5.328 13 C 0.007 3.993 14 C -0.126 4.126 15 H 0.146 0.854 16 C 0.048 3.952 17 N -0.348 5.348 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.253 4.253 21 N -0.593 5.593 22 Si 0.800 3.200 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.012 3.988 27 C -0.113 4.113 28 H 0.157 0.843 29 C -0.012 4.012 30 C -0.022 4.022 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.191 0.809 35 H 0.214 0.786 36 H 0.195 0.805 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.140 0.860 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.832 -0.874 8.363 22.465 hybrid contribution -2.179 0.055 -0.697 2.288 sum 18.653 -0.819 7.666 20.184 Atomic orbital electron populations 1.22088 0.71713 1.04657 1.04514 1.50192 1.08558 1.03578 1.56252 1.81591 0.94416 1.08255 1.17534 1.74763 1.11390 1.11517 1.13368 1.20447 0.93688 0.90026 1.12693 1.21165 0.97829 0.91695 0.92346 1.21493 0.97449 0.94528 1.00512 1.21912 0.90688 1.00702 0.89725 1.18790 0.94082 0.89276 1.13961 1.18102 0.87751 0.78464 0.79970 1.90780 1.53196 1.59508 1.42406 1.48208 1.15761 1.35581 1.33238 1.21630 0.84605 0.94001 0.99042 1.23066 0.96221 0.99249 0.94104 0.85372 1.21220 0.94814 0.88984 0.90135 1.44488 1.01328 1.39582 1.49385 1.19331 0.87812 1.12063 1.17822 0.90911 1.25507 0.98309 1.00195 1.01254 1.70091 1.12662 1.34811 1.41747 0.85188 0.78420 0.78411 0.77986 1.21019 1.21998 1.20074 1.21364 0.84019 0.96144 0.97288 1.22920 0.95123 0.98321 0.94929 0.84346 1.22371 0.92739 0.98542 0.87521 1.19449 0.91648 0.89723 1.01394 0.89433 0.87333 0.90913 0.80901 0.78571 0.80534 0.95356 0.90855 0.92620 0.98717 0.94351 0.97561 0.95565 0.86026 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.32 9.78 127.77 1.25 4.57 16 2 N -0.39 -12.37 4.10 -360.41 -1.48 -13.84 16 3 N -0.04 -1.24 13.72 37.02 0.51 -0.74 16 4 N -0.23 -6.93 12.40 -52.20 -0.65 -7.58 16 5 C -0.04 -1.08 7.26 39.58 0.29 -0.79 16 6 C -0.01 -0.12 10.09 22.58 0.23 0.11 16 7 C -0.12 -0.97 9.98 22.18 0.22 -0.75 16 8 C -0.01 -0.11 8.50 22.56 0.19 0.08 16 9 C -0.15 -3.69 5.19 -20.06 -0.10 -3.79 16 10 C 0.57 17.12 6.31 86.69 0.55 17.67 16 11 O -0.58 -21.78 14.32 -4.02 -0.06 -21.84 16 12 N -0.60 -16.52 3.31 -821.27 -2.72 -19.23 16 13 C 0.13 4.30 6.24 86.58 0.54 4.84 16 14 C -0.11 -3.29 4.09 -9.41 -0.04 -3.33 16 15 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 16 C 0.17 7.94 4.84 86.66 0.42 8.36 16 17 N -0.62 -30.70 3.38 -697.72 -2.35 -33.05 16 18 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.06 -3.36 5.48 84.86 0.47 -2.89 16 21 N -0.94 -55.49 10.16 21.65 0.22 -55.27 16 22 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 C 0.14 5.16 6.63 86.57 0.57 5.73 16 27 C -0.09 -2.40 4.09 -9.40 -0.04 -2.44 16 28 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 29 C 0.11 2.14 4.65 86.66 0.40 2.55 16 30 C 0.10 2.89 6.81 39.41 0.27 3.15 16 31 H 0.09 2.60 7.79 -2.39 -0.02 2.58 16 32 H 0.11 2.74 8.14 -2.38 -0.02 2.73 16 33 H 0.07 2.48 6.20 -2.39 -0.01 2.46 16 34 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 35 H 0.20 -0.29 8.06 -2.91 -0.02 -0.32 16 36 H 0.18 1.10 6.58 -2.91 -0.02 1.08 16 37 H 0.03 1.24 7.47 -2.39 -0.02 1.22 16 38 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.06 3.01 5.83 -2.39 -0.01 2.99 16 40 H -0.01 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 42 H 0.01 0.26 7.47 -2.39 -0.02 0.24 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.12 1.17 6.93 -2.39 -0.02 1.15 16 45 H 0.08 1.54 7.48 -2.39 -0.02 1.52 16 Total: -1.00 -80.41 359.32 2.61 -77.80 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.03 Total: 5.25 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 6.08 Total: 20.49 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -6.47 Total: -129.71 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.41 2.61 -77.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.789 kcal (2) G-P(sol) polarization free energy of solvation -80.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds