Wall clock time and date at job start Wed Apr 1 2020 00:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47136 * 2 1 4 4 N 1.28713 * 126.04144 * 274.60771 * 3 2 1 5 5 N 1.28504 * 110.64349 * 180.26469 * 4 3 2 6 6 C 1.33317 * 109.43934 * 359.75216 * 5 4 3 7 7 C 1.37013 * 106.37219 * 0.02562 * 6 5 4 8 8 C 1.47225 * 127.18963 * 179.97438 * 7 6 5 9 9 O 1.21620 * 120.00040 * 174.53518 * 8 7 6 10 10 N 1.34777 * 120.00269 * 354.53290 * 8 7 6 11 11 C 1.46499 * 120.00062 * 185.10843 * 10 8 7 12 12 C 1.50705 * 109.46980 * 179.97438 * 11 10 8 13 13 C 1.38258 * 120.01461 * 90.00209 * 12 11 10 14 14 C 1.38144 * 119.95878 * 179.97438 * 13 12 11 15 15 C 1.38448 * 120.10772 * 359.97438 * 14 13 12 16 16 C 1.38070 * 119.93046 * 0.02562 * 15 14 13 17 17 C 1.38145 * 120.01992 * 269.73105 * 12 11 10 18 18 C 1.50776 * 108.86084 * 180.02562 * 16 15 14 19 19 N 1.46635 * 107.70010 * 359.97438 * 18 16 15 20 20 C 1.36944 * 126.56232 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00078 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99879 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00087 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99862 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47122 * 59.99809 * 24 22 20 26 26 H 1.48494 * 109.47261 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46962 * 300.00149 * 24 22 20 28 28 C 1.46634 * 106.87797 * 359.97438 * 19 18 16 29 29 H 1.08997 * 109.47230 * 59.99787 * 1 2 3 30 30 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47327 * 299.99836 * 1 2 3 32 32 H 1.09006 * 109.47186 * 240.00543 * 2 1 3 33 33 H 1.08997 * 109.47230 * 120.00213 * 2 1 3 34 34 H 1.08001 * 126.81779 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99661 * 5.11504 * 10 8 7 36 36 H 1.08998 * 109.47751 * 300.00186 * 11 10 8 37 37 H 1.09003 * 109.47228 * 60.00667 * 11 10 8 38 38 H 1.08000 * 120.02263 * 359.97438 * 13 12 11 39 39 H 1.08006 * 119.94780 * 180.02562 * 14 13 12 40 40 H 1.07994 * 119.95253 * 359.97438 * 17 12 11 41 41 H 1.09001 * 109.81502 * 119.54338 * 18 16 15 42 42 H 1.09000 * 109.81349 * 240.45281 * 18 16 15 43 43 H 0.96998 * 120.00258 * 179.97438 * 23 22 20 44 44 H 1.08993 * 109.81189 * 240.45535 * 28 19 18 45 45 H 1.08996 * 109.81677 * 119.54583 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1919 2.1231 -1.0374 5 7 2.6359 3.2801 -0.6978 6 6 2.7666 3.3336 0.6279 7 6 2.3688 2.1123 1.1048 8 6 2.3307 1.6750 2.5101 9 8 1.8593 0.5913 2.7972 10 7 2.8184 2.4757 3.4784 11 6 2.8835 1.9965 4.8613 12 6 3.4635 3.0750 5.7398 13 6 2.6299 3.9983 6.3432 14 6 3.1628 4.9860 7.1487 15 6 4.5304 5.0527 7.3532 16 6 5.3629 4.1306 6.7506 17 6 4.8279 3.1381 5.9471 18 6 6.7878 4.4326 7.1401 19 7 6.7702 5.6037 8.0224 20 6 7.8558 6.2064 8.5999 21 1 8.8478 5.8196 8.4192 22 6 7.6812 7.3151 9.4167 23 7 6.4723 7.7868 9.6365 24 14 9.1621 8.1377 10.2039 25 1 10.0851 8.6153 9.1431 26 1 8.7105 9.2906 11.0236 27 1 9.8681 7.1606 11.0712 28 6 5.3677 6.0067 8.1670 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.1173 4.1727 1.2104 35 1 3.1261 3.3692 3.2597 36 1 1.8805 1.7463 5.2069 37 1 3.5160 1.1101 4.9093 38 1 1.5628 3.9473 6.1850 39 1 2.5114 5.7069 7.6203 40 1 5.4784 2.4139 5.4795 41 1 7.2157 3.5794 7.6666 42 1 7.3761 4.6508 6.2489 43 1 6.3503 8.5613 10.2076 44 1 5.2356 7.0235 7.7972 45 1 5.0739 5.9528 9.2152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054263707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:15 Heat of formation + Delta-G solvation = 99.748496 kcal Electronic energy + Delta-G solvation = -28094.832198 eV Core-core repulsion = 24114.538024 eV Total energy + Delta-G solvation = -3980.294174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.39605 -41.21748 -40.47431 -37.89875 -36.61079 -35.70068 -34.14774 -32.98723 -32.16487 -31.80019 -31.28597 -29.00487 -27.71114 -26.46544 -25.47850 -24.58299 -23.60389 -22.93943 -22.08276 -21.64039 -21.26365 -19.23864 -18.99038 -17.96244 -17.55011 -17.20741 -17.07890 -16.45987 -16.22667 -16.06015 -15.87731 -15.83353 -15.63402 -15.18202 -14.94715 -14.79756 -14.47801 -13.95462 -13.59332 -13.46430 -13.45398 -13.32635 -13.20252 -13.14945 -13.03415 -13.02771 -12.67512 -12.62523 -12.15212 -11.99700 -11.96519 -11.81687 -11.61969 -11.38060 -11.28012 -10.89989 -10.66185 -10.17155 -9.69021 -9.57876 -8.83758 -7.92997 -5.29647 -0.16624 0.26331 0.48599 1.07849 1.19770 1.46260 1.50111 1.56378 1.95705 2.07202 2.45321 2.84061 3.29010 3.29368 3.43083 3.47717 3.55882 3.66965 3.82277 3.90411 3.95518 3.99446 4.17183 4.25347 4.35111 4.38070 4.53153 4.64318 4.68095 4.75146 4.81228 4.83339 4.86043 4.96586 4.99798 5.09688 5.20772 5.22178 5.30943 5.33945 5.36287 5.47843 5.53259 5.58567 5.89556 6.07495 6.10871 6.30635 6.91652 7.01214 7.24304 7.66447 8.33903 9.19836 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.001949 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.711887 B =14365.621114 C =14846.604273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.096 3.904 3 N -0.249 5.249 4 N -0.079 5.079 5 N -0.305 5.305 6 C 0.009 3.991 7 C -0.078 4.078 8 C 0.602 3.398 9 O -0.556 6.556 10 N -0.694 5.694 11 C 0.179 3.821 12 C -0.110 4.110 13 C -0.084 4.084 14 C -0.113 4.113 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.072 4.072 18 C 0.170 3.830 19 N -0.625 5.625 20 C -0.245 4.245 21 H 0.090 0.910 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.987 3.013 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.275 1.275 28 C 0.220 3.780 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.228 0.772 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.143 0.857 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.102 -16.177 -16.687 26.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.047 5.047 4 N -0.059 5.059 5 N -0.166 5.166 6 C -0.153 4.153 7 C -0.213 4.213 8 C 0.386 3.614 9 O -0.435 6.435 10 N -0.346 5.346 11 C 0.057 3.943 12 C -0.111 4.111 13 C -0.103 4.103 14 C -0.131 4.131 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.091 4.091 18 C 0.046 3.954 19 N -0.351 5.351 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.258 4.258 23 N -0.600 5.600 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.201 1.201 28 C 0.095 3.905 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.244 0.756 35 H 0.253 0.747 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.459 -16.757 -17.882 27.959 hybrid contribution 1.110 1.347 1.875 2.561 sum -12.349 -15.411 -16.007 25.421 Atomic orbital electron populations 1.22058 0.91754 1.05353 1.02382 1.22705 0.97548 0.74448 1.07571 1.48212 1.38972 1.14216 1.03277 1.78224 1.16636 0.98549 1.12505 1.74899 1.16304 1.11408 1.14018 1.24487 1.01432 0.97904 0.91428 1.22053 1.13171 0.94916 0.91135 1.16580 0.78062 0.84152 0.82563 1.90801 1.46762 1.22738 1.83196 1.45700 1.63132 1.18550 1.07231 1.20162 1.02278 0.94158 0.77702 1.19597 0.92522 0.98183 1.00765 1.21184 1.00837 0.92920 0.95324 1.20692 0.92275 1.00130 1.00017 1.21187 0.95234 0.97098 0.97598 1.20569 0.95331 0.96939 0.99001 1.20533 0.95077 0.96656 0.96838 1.19817 0.92678 0.89699 0.93251 1.44254 1.02920 1.32221 1.55753 1.19358 0.86594 1.08567 1.22781 0.89219 1.25757 0.99922 0.99193 1.00931 1.70142 1.21463 1.26289 1.42116 0.85034 0.78023 0.77500 0.78050 1.20001 1.21904 1.20069 1.19287 0.82625 0.93438 0.95189 0.91903 0.87120 0.92934 0.85605 0.86062 0.75558 0.74654 0.88974 0.89528 0.82530 0.85338 0.83890 0.94205 0.93993 0.94033 0.95795 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.24 71.98 0.74 -0.81 16 2 C 0.10 1.12 6.68 86.38 0.58 1.70 16 3 N -0.25 -4.44 3.39 -335.44 -1.14 -5.57 16 4 N -0.08 -1.74 13.14 37.02 0.49 -1.26 16 5 N -0.30 -6.93 12.35 -57.50 -0.71 -7.64 16 6 C 0.01 0.15 11.55 84.18 0.97 1.12 16 7 C -0.08 -1.34 6.98 40.41 0.28 -1.05 16 8 C 0.60 9.93 7.79 86.60 0.67 10.61 16 9 O -0.56 -11.47 14.84 -4.09 -0.06 -11.54 16 10 N -0.69 -9.00 5.54 -470.30 -2.60 -11.61 16 11 C 0.18 2.51 5.81 85.63 0.50 3.01 16 12 C -0.11 -2.09 5.25 -19.88 -0.10 -2.20 16 13 C -0.08 -1.73 9.70 22.25 0.22 -1.52 16 14 C -0.11 -3.27 10.05 22.30 0.22 -3.05 16 15 C -0.11 -4.21 6.22 -19.83 -0.12 -4.33 16 16 C -0.12 -4.07 6.22 -19.83 -0.12 -4.19 16 17 C -0.07 -1.74 9.70 22.30 0.22 -1.53 16 18 C 0.17 7.06 7.25 85.63 0.62 7.68 16 19 N -0.63 -32.82 3.41 -709.72 -2.42 -35.24 16 20 C -0.25 -13.73 10.32 84.03 0.87 -12.86 16 21 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 22 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 23 N -0.95 -56.90 10.44 21.65 0.23 -56.67 16 24 Si 0.99 45.10 29.55 68.60 2.03 47.13 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.22 11.09 5.39 85.63 0.46 11.56 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.12 1.49 6.34 -2.39 -0.02 1.47 16 34 H 0.23 2.03 7.56 -2.91 -0.02 2.01 16 35 H 0.42 4.16 7.50 -92.71 -0.70 3.47 16 36 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 37 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 44 H 0.02 1.36 7.49 -2.39 -0.02 1.34 16 45 H 0.02 1.25 7.49 -2.39 -0.02 1.23 16 Total: -1.00 -74.83 380.32 2.60 -72.23 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.33 Total: 9.23 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 6.46 Total: 0.93 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -6.16 Total: -117.98 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.06 Total: -11.54 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.83 2.60 -72.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054263707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.974 kcal (2) G-P(sol) polarization free energy of solvation -74.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds