Wall clock time and date at job start Wed Apr 1 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46730 * 2 1 4 4 N 1.28519 * 124.44195 * 90.02990 * 3 2 1 5 5 C 1.31133 * 109.06158 * 179.97438 * 4 3 2 6 6 C 1.40923 * 105.77436 * 359.97438 * 5 4 3 7 7 C 1.47805 * 127.24024 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99568 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00060 * 179.72796 * 7 6 5 10 10 C 1.46504 * 119.99912 * 180.27345 * 9 7 6 11 11 C 1.50698 * 109.46806 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.01413 * 90.00664 * 11 10 9 13 13 C 1.38151 * 119.95812 * 179.97438 * 12 11 10 14 14 C 1.38439 * 120.10588 * 359.97438 * 13 12 11 15 15 C 1.38071 * 119.93582 * 0.02562 * 14 13 12 16 16 C 1.38143 * 120.02362 * 269.72409 * 11 10 9 17 17 C 1.50772 * 108.86250 * 180.02562 * 15 14 13 18 18 N 1.46636 * 107.70370 * 0.02562 * 17 15 14 19 19 C 1.36936 * 126.56440 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99834 * 354.39262 * 19 18 17 21 21 C 1.38808 * 120.00156 * 174.39807 * 19 18 17 22 22 N 1.31620 * 119.99899 * 6.80926 * 21 19 18 23 23 Si 1.86799 * 120.00222 * 186.81819 * 21 19 18 24 24 H 1.48493 * 109.47591 * 94.98002 * 23 21 19 25 25 H 1.48506 * 109.47153 * 214.98228 * 23 21 19 26 26 H 1.48504 * 109.46866 * 334.98043 * 23 21 19 27 27 C 1.46632 * 106.87170 * 359.97438 * 18 17 15 28 28 N 1.28581 * 124.44542 * 270.25153 * 3 2 1 29 29 H 1.09001 * 109.47298 * 299.99774 * 1 2 3 30 30 H 1.09001 * 109.46681 * 59.99910 * 1 2 3 31 31 H 1.08994 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47339 * 239.99795 * 2 1 3 33 33 H 1.09001 * 109.46853 * 119.99563 * 2 1 3 34 34 H 1.08004 * 127.11563 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00065 * 0.27563 * 9 7 6 36 36 H 1.09002 * 109.47258 * 300.00309 * 10 9 7 37 37 H 1.09004 * 109.46624 * 60.00542 * 10 9 7 38 38 H 1.07996 * 120.01892 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.94393 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.94831 * 0.02562 * 16 11 10 41 41 H 1.09007 * 109.80919 * 119.55131 * 17 15 14 42 42 H 1.08996 * 109.81460 * 240.45000 * 17 15 14 43 43 H 0.96998 * 120.00011 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.81392 * 240.45619 * 27 18 17 45 45 H 1.08998 * 109.81123 * 119.54936 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 1.0599 5 6 2.6828 3.2583 0.7121 6 6 2.6862 3.2674 -0.6971 7 6 3.0804 4.3826 -1.5834 8 8 3.4530 5.4363 -1.1054 9 7 3.0323 4.2292 -2.9216 10 6 3.4286 5.3326 -3.8001 11 6 3.2847 4.9062 -5.2382 12 6 2.0905 5.1112 -5.9041 13 6 1.9600 4.7202 -7.2228 14 6 3.0233 4.1239 -7.8788 15 6 4.2158 3.9192 -7.2137 16 6 4.3476 4.3155 -5.8938 17 6 5.1920 3.2602 -8.1551 18 7 4.5148 3.0761 -9.4426 19 6 5.0475 2.5126 -10.5713 20 1 6.0908 2.2341 -10.5950 21 6 4.2468 2.2997 -11.6849 22 7 3.0136 2.7591 -11.7064 23 14 4.9194 1.3608 -13.1532 24 1 4.5362 -0.0697 -13.0439 25 1 4.3570 1.9297 -14.4044 26 1 6.3997 1.4762 -13.1785 27 6 3.1576 3.6097 -9.2898 28 7 2.2563 2.0685 -1.0604 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9692 4.0659 1.3696 35 1 2.7352 3.3882 -3.3030 36 1 2.7898 6.1953 -3.6107 37 1 4.4670 5.5991 -3.6027 38 1 1.2603 5.5766 -5.3938 39 1 1.0269 4.8801 -7.7426 40 1 5.2816 4.1593 -5.3746 41 1 6.0667 3.8974 -8.2858 42 1 5.4952 2.2927 -7.7550 43 1 2.4539 2.6099 -12.4845 44 1 2.4278 2.8195 -9.4662 45 1 2.9993 4.4245 -9.9963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054264017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:22 Heat of formation + Delta-G solvation = 131.253252 kcal Electronic energy + Delta-G solvation = -27859.793755 eV Core-core repulsion = 23880.865730 eV Total energy + Delta-G solvation = -3978.928025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.98257 -39.97756 -39.30121 -36.39961 -35.27939 -34.60236 -33.03415 -32.24339 -31.26463 -30.76664 -29.72705 -27.62932 -26.17346 -25.46755 -24.59953 -23.55454 -22.04034 -21.91951 -20.64823 -20.44068 -20.11952 -18.19628 -17.44360 -17.04379 -16.94167 -16.08695 -15.58717 -15.47349 -15.27598 -14.83722 -14.59466 -14.55379 -14.33773 -14.21917 -13.86823 -13.39343 -13.19896 -13.03077 -12.76391 -12.46803 -12.27297 -11.98744 -11.94040 -11.87136 -11.68276 -11.56531 -11.33541 -11.10995 -10.87255 -10.76670 -10.51799 -10.45469 -10.22665 -10.15180 -9.83606 -9.81068 -9.23076 -8.95229 -8.42969 -8.04254 -6.87628 -5.85419 -3.17718 1.01289 1.53739 1.64154 1.73667 1.77859 3.01657 3.04971 3.35534 3.40559 3.42811 3.60323 4.11839 4.26898 4.30131 4.38657 4.56189 4.58105 4.68460 4.79176 4.96225 5.01069 5.12289 5.23596 5.30451 5.33728 5.39086 5.48051 5.49138 5.56451 5.60562 5.68639 5.84759 6.01198 6.09573 6.17308 6.20054 6.48422 6.52699 6.53811 6.75185 6.77583 7.03609 7.26838 7.29717 7.34571 7.51161 7.66614 7.79245 7.95651 8.10574 9.08334 9.68438 10.35968 11.29041 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002098 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.288035 B =13342.376641 C =14369.556803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.139 5.139 4 N -0.291 5.291 5 C 0.034 3.966 6 C -0.047 4.047 7 C 0.608 3.392 8 O -0.531 6.531 9 N -0.707 5.707 10 C 0.170 3.830 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.112 4.112 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.082 4.082 17 C 0.175 3.825 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.917 3.083 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.205 3.795 28 N -0.246 5.246 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.208 0.792 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -2.042 23.909 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 N -0.043 5.043 4 N -0.131 5.131 5 C -0.150 4.150 6 C -0.210 4.210 7 C 0.391 3.609 8 O -0.406 6.406 9 N -0.358 5.358 10 C 0.048 3.952 11 C -0.134 4.134 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.101 4.101 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.747 3.253 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.080 3.920 28 N -0.095 5.095 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.304 -2.614 23.991 24.709 hybrid contribution 0.372 -0.067 -0.975 1.046 sum -4.932 -2.681 23.016 23.690 Atomic orbital electron populations 1.22199 0.92741 1.04233 1.03851 1.22152 0.96351 0.73953 1.06318 1.48298 1.43433 1.13471 0.99092 1.74012 1.17807 1.05581 1.15652 1.24851 1.01261 0.95208 0.93637 1.23088 1.09389 0.93702 0.94862 1.16628 0.77750 0.84930 0.81546 1.90818 1.47559 1.26742 1.75435 1.46027 1.66681 1.18195 1.04943 1.20186 1.01287 0.88665 0.85096 1.19431 0.94938 1.04290 0.94697 1.20828 0.96578 1.00213 0.94423 1.20498 0.98463 0.99929 0.94205 1.21544 0.93232 0.94469 0.98842 1.20720 0.97029 0.99042 0.93944 1.20307 0.98169 0.98392 0.93249 1.19707 0.93137 0.96584 0.85594 1.43958 1.10004 1.71349 1.07417 1.18984 0.94419 1.32941 0.89110 0.89831 1.24857 0.96138 1.00750 0.98523 1.69937 1.07721 1.49022 1.30105 0.86026 0.78032 0.79613 0.81674 1.21459 1.21632 1.20466 1.19753 0.88343 0.97601 0.86290 1.74397 1.14694 1.04471 1.15908 0.91342 0.91159 0.89273 0.86866 0.86980 0.77536 0.75466 0.90397 0.90404 0.86275 0.86106 0.86484 0.94609 0.94540 0.93453 0.91577 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.24 37.16 0.38 -0.34 16 2 C 0.13 0.66 7.24 -4.04 -0.03 0.63 16 3 N -0.14 -1.29 3.94 -10.61 -0.04 -1.33 16 4 N -0.29 -2.93 12.01 30.90 0.37 -2.56 16 5 C 0.03 0.35 12.04 -16.83 -0.20 0.14 16 6 C -0.05 -0.54 7.21 -82.67 -0.60 -1.14 16 7 C 0.61 7.57 7.83 -12.35 -0.10 7.47 16 8 O -0.53 -7.82 16.95 5.32 0.09 -7.73 16 9 N -0.71 -8.08 5.55 -62.44 -0.35 -8.43 16 10 C 0.17 1.97 5.80 -5.19 -0.03 1.94 16 11 C -0.13 -1.78 5.25 -104.65 -0.55 -2.33 16 12 C -0.10 -1.40 9.70 -39.61 -0.38 -1.78 16 13 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 14 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 15 C -0.11 -2.00 6.22 -104.57 -0.65 -2.65 16 16 C -0.08 -1.25 9.70 -39.54 -0.38 -1.63 16 17 C 0.18 3.73 7.25 -5.08 -0.04 3.69 16 18 N -0.60 -15.45 3.41 -175.68 -0.60 -16.05 16 19 C -0.23 -6.25 10.31 -15.06 -0.16 -6.40 16 20 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 21 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 22 N -0.92 -26.45 10.49 55.49 0.58 -25.86 16 23 Si 0.92 21.62 29.56 -169.99 -5.02 16.59 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.20 4.97 5.40 -5.08 -0.03 4.94 16 28 N -0.25 -2.67 11.84 33.43 0.40 -2.27 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.21 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.41 4.50 8.23 -40.82 -0.34 4.17 16 36 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.07 1.76 7.38 -51.93 -0.38 1.37 16 45 H 0.06 1.64 7.62 -51.93 -0.40 1.24 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -33.00 385.78 -8.81 -41.82 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.15 Total: 2.19 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.90 Total: -2.19 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.36 Total: -56.50 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.00 -8.81 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054264017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.072 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds