Wall clock time and date at job start Wed Apr 1 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46730 * 2 1 4 4 N 1.28519 * 124.44195 * 90.02990 * 3 2 1 5 5 C 1.31133 * 109.06158 * 179.97438 * 4 3 2 6 6 C 1.40923 * 105.77436 * 359.97438 * 5 4 3 7 7 C 1.47805 * 127.24024 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99568 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00060 * 179.72796 * 7 6 5 10 10 C 1.46504 * 119.99912 * 180.27345 * 9 7 6 11 11 C 1.50698 * 109.46806 * 179.97438 * 10 9 7 12 12 C 1.38256 * 120.01413 * 90.00664 * 11 10 9 13 13 C 1.38151 * 119.95812 * 179.97438 * 12 11 10 14 14 C 1.38439 * 120.10588 * 359.97438 * 13 12 11 15 15 C 1.38071 * 119.93582 * 0.02562 * 14 13 12 16 16 C 1.38143 * 120.02362 * 269.72409 * 11 10 9 17 17 C 1.50772 * 108.86250 * 180.02562 * 15 14 13 18 18 N 1.46636 * 107.70370 * 0.02562 * 17 15 14 19 19 C 1.36936 * 126.56440 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99834 * 354.39262 * 19 18 17 21 21 C 1.38808 * 120.00156 * 174.39807 * 19 18 17 22 22 N 1.31620 * 119.99899 * 6.80926 * 21 19 18 23 23 Si 1.86799 * 120.00222 * 186.81819 * 21 19 18 24 24 H 1.48493 * 109.47591 * 94.98002 * 23 21 19 25 25 H 1.48506 * 109.47153 * 214.98228 * 23 21 19 26 26 H 1.48504 * 109.46866 * 334.98043 * 23 21 19 27 27 C 1.46632 * 106.87170 * 359.97438 * 18 17 15 28 28 N 1.28581 * 124.44542 * 270.25153 * 3 2 1 29 29 H 1.09001 * 109.47298 * 299.99774 * 1 2 3 30 30 H 1.09001 * 109.46681 * 59.99910 * 1 2 3 31 31 H 1.08994 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47339 * 239.99795 * 2 1 3 33 33 H 1.09001 * 109.46853 * 119.99563 * 2 1 3 34 34 H 1.08004 * 127.11563 * 180.02562 * 5 4 3 35 35 H 0.97005 * 120.00065 * 0.27563 * 9 7 6 36 36 H 1.09002 * 109.47258 * 300.00309 * 10 9 7 37 37 H 1.09004 * 109.46624 * 60.00542 * 10 9 7 38 38 H 1.07996 * 120.01892 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.94393 * 179.97438 * 13 12 11 40 40 H 1.07997 * 119.94831 * 0.02562 * 16 11 10 41 41 H 1.09007 * 109.80919 * 119.55131 * 17 15 14 42 42 H 1.08996 * 109.81460 * 240.45000 * 17 15 14 43 43 H 0.96998 * 120.00011 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.81392 * 240.45619 * 27 18 17 45 45 H 1.08998 * 109.81123 * 119.54936 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 1.0599 5 6 2.6828 3.2583 0.7121 6 6 2.6862 3.2674 -0.6971 7 6 3.0804 4.3826 -1.5834 8 8 3.4530 5.4363 -1.1054 9 7 3.0323 4.2292 -2.9216 10 6 3.4286 5.3326 -3.8001 11 6 3.2847 4.9062 -5.2382 12 6 2.0905 5.1112 -5.9041 13 6 1.9600 4.7202 -7.2228 14 6 3.0233 4.1239 -7.8788 15 6 4.2158 3.9192 -7.2137 16 6 4.3476 4.3155 -5.8938 17 6 5.1920 3.2602 -8.1551 18 7 4.5148 3.0761 -9.4426 19 6 5.0475 2.5126 -10.5713 20 1 6.0908 2.2341 -10.5950 21 6 4.2468 2.2997 -11.6849 22 7 3.0136 2.7591 -11.7064 23 14 4.9194 1.3608 -13.1532 24 1 4.5362 -0.0697 -13.0439 25 1 4.3570 1.9297 -14.4044 26 1 6.3997 1.4762 -13.1785 27 6 3.1576 3.6097 -9.2898 28 7 2.2563 2.0685 -1.0604 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9692 4.0659 1.3696 35 1 2.7352 3.3882 -3.3030 36 1 2.7898 6.1953 -3.6107 37 1 4.4670 5.5991 -3.6027 38 1 1.2603 5.5766 -5.3938 39 1 1.0269 4.8801 -7.7426 40 1 5.2816 4.1593 -5.3746 41 1 6.0667 3.8974 -8.2858 42 1 5.4952 2.2927 -7.7550 43 1 2.4539 2.6099 -12.4845 44 1 2.4278 2.8195 -9.4662 45 1 2.9993 4.4245 -9.9963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054264017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:21 Heat of formation + Delta-G solvation = 109.361795 kcal Electronic energy + Delta-G solvation = -27860.743040 eV Core-core repulsion = 23880.865730 eV Total energy + Delta-G solvation = -3979.877310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.71465 -41.22702 -40.44089 -37.88711 -35.82706 -35.80294 -34.19046 -33.70497 -32.49215 -31.59633 -31.21422 -29.06328 -27.75158 -26.64465 -25.52431 -24.47737 -23.56174 -22.55808 -22.10490 -21.52841 -21.40270 -19.02235 -19.00323 -18.18071 -17.66752 -17.22559 -17.02567 -16.49455 -16.22979 -16.07374 -15.97071 -15.83819 -15.69572 -15.10672 -14.97551 -14.79910 -14.49941 -13.80437 -13.54416 -13.47579 -13.46521 -13.36259 -13.11313 -13.05540 -13.03693 -12.96027 -12.71395 -12.36247 -12.08885 -12.06973 -11.98801 -11.84738 -11.65291 -11.53750 -11.44756 -10.90321 -10.55338 -10.14113 -9.71770 -9.59648 -8.85140 -7.95271 -5.31204 0.20194 0.25937 0.45708 0.88831 1.19517 1.45609 1.48137 1.57320 2.08416 2.15487 2.44185 2.79113 2.94491 3.26891 3.45850 3.53845 3.72166 3.82175 3.91288 3.93942 3.96950 4.07165 4.14610 4.25432 4.35811 4.50933 4.58531 4.65364 4.68626 4.73724 4.74755 4.78624 4.83740 4.97014 4.98525 5.15188 5.18175 5.26208 5.27575 5.33384 5.44884 5.51911 5.55029 5.56865 5.86131 6.04792 6.09299 6.36309 6.97850 6.99538 7.09979 7.64536 8.32990 9.18394 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002098 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.288035 B =13342.376641 C =14369.556803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.133 5.133 4 N -0.299 5.299 5 C 0.030 3.970 6 C -0.067 4.067 7 C 0.613 3.387 8 O -0.556 6.556 9 N -0.702 5.702 10 C 0.174 3.826 11 C -0.110 4.110 12 C -0.087 4.087 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.075 4.075 17 C 0.171 3.829 18 N -0.625 5.625 19 C -0.246 4.246 20 H 0.090 0.910 21 C -0.063 4.063 22 N -0.951 5.951 23 Si 0.987 3.013 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.265 1.265 27 C 0.220 3.780 28 N -0.254 5.254 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.133 0.867 34 H 0.225 0.775 35 H 0.413 0.587 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.027 0.973 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 -2.326 26.389 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.038 5.038 4 N -0.139 5.139 5 C -0.153 4.153 6 C -0.229 4.229 7 C 0.397 3.603 8 O -0.433 6.433 9 N -0.352 5.352 10 C 0.052 3.948 11 C -0.111 4.111 12 C -0.105 4.105 13 C -0.130 4.130 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.094 4.094 17 C 0.047 3.953 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.814 3.186 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.189 1.189 27 C 0.095 3.905 28 N -0.104 5.104 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.241 0.759 35 H 0.249 0.751 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.152 -2.906 26.493 27.145 hybrid contribution 0.296 -0.002 -1.602 1.629 sum -4.856 -2.908 24.891 25.526 Atomic orbital electron populations 1.22170 0.92081 1.05518 1.02622 1.22622 0.96883 0.72327 1.08065 1.48794 1.42203 1.14298 0.98517 1.74017 1.18100 1.05734 1.16011 1.25197 1.00841 0.95700 0.93527 1.22996 1.10761 0.93849 0.95246 1.16671 0.77177 0.84776 0.81676 1.90804 1.48874 1.27779 1.75863 1.45926 1.66366 1.18247 1.04704 1.20183 1.02197 0.88944 0.83455 1.19630 0.94016 1.01940 0.95488 1.21175 0.97699 0.98601 0.93041 1.20687 0.97832 0.99169 0.95299 1.21191 0.95529 0.97774 0.96685 1.20571 0.95761 1.00350 0.95138 1.20517 0.99769 0.97456 0.91615 1.19804 0.93746 0.97214 0.84575 1.44266 1.10938 1.71281 1.08643 1.19401 0.94967 1.32886 0.90117 0.89205 1.25780 0.96568 1.01810 1.01512 1.70165 1.08964 1.50147 1.30603 0.84945 0.78047 0.77894 0.77736 1.21116 1.21909 1.18926 1.19291 0.87168 0.95166 0.88844 1.74356 1.14850 1.04509 1.16651 0.92168 0.92664 0.86747 0.85542 0.84893 0.75859 0.75073 0.89073 0.89714 0.82696 0.85111 0.84120 0.94133 0.93980 0.93975 0.95500 0.96100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 71.98 0.74 -0.34 16 2 C 0.12 0.92 7.24 86.38 0.63 1.55 16 3 N -0.13 -2.21 3.94 -187.49 -0.74 -2.95 16 4 N -0.30 -5.50 12.01 -56.16 -0.67 -6.17 16 5 C 0.03 0.56 12.04 85.46 1.03 1.59 16 6 C -0.07 -1.41 7.21 42.24 0.30 -1.11 16 7 C 0.61 13.92 7.83 86.77 0.68 14.60 16 8 O -0.56 -15.26 16.95 -3.89 -0.07 -15.33 16 9 N -0.70 -13.98 5.55 -469.74 -2.60 -16.58 16 10 C 0.17 3.39 5.80 85.63 0.50 3.88 16 11 C -0.11 -2.58 5.25 -19.88 -0.10 -2.68 16 12 C -0.09 -2.10 9.70 22.25 0.22 -1.88 16 13 C -0.11 -3.52 10.05 22.30 0.22 -3.30 16 14 C -0.11 -4.48 6.22 -19.83 -0.12 -4.60 16 15 C -0.12 -4.37 6.22 -19.83 -0.12 -4.49 16 16 C -0.07 -2.08 9.70 22.30 0.22 -1.87 16 17 C 0.17 7.41 7.25 85.63 0.62 8.03 16 18 N -0.62 -33.59 3.41 -709.71 -2.42 -36.01 16 19 C -0.25 -13.98 10.31 84.03 0.87 -13.11 16 20 H 0.09 4.82 7.84 -2.91 -0.02 4.80 16 21 C -0.06 -3.62 5.48 84.86 0.47 -3.15 16 22 N -0.95 -57.41 10.49 21.65 0.23 -57.18 16 23 Si 0.99 45.46 29.56 68.60 2.03 47.49 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 27 C 0.22 11.43 5.40 85.63 0.46 11.89 16 28 N -0.25 -5.06 11.84 -48.16 -0.57 -5.63 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 32 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.22 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.41 7.90 8.23 -92.70 -0.76 7.14 16 36 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 37 H 0.08 1.62 8.08 -2.38 -0.02 1.60 16 38 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.03 1.56 7.38 -2.38 -0.02 1.54 16 45 H 0.02 1.21 7.62 -2.39 -0.02 1.20 16 Total: -1.00 -74.94 385.78 2.03 -72.90 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.26 Total: 14.45 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.59 Total: 5.00 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -6.78 Total: -124.51 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.07 Total: -15.33 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.94 2.03 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054264017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.264 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds