Wall clock time and date at job start Wed Apr 1 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47292 * 2 1 4 4 C 1.34806 * 126.59580 * 124.99547 * 3 2 1 5 5 C 1.36596 * 106.83749 * 179.75462 * 4 3 2 6 6 C 1.47527 * 125.76990 * 180.26004 * 5 4 3 7 7 O 1.21592 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00039 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00144 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47063 * 180.02562 * 9 8 6 11 11 C 1.38254 * 120.01869 * 90.00358 * 10 9 8 12 12 C 1.38146 * 119.95786 * 180.02562 * 11 10 9 13 13 C 1.38446 * 120.10503 * 359.97438 * 12 11 10 14 14 C 1.38057 * 119.93763 * 0.02562 * 13 12 11 15 15 C 1.38151 * 120.01777 * 269.72472 * 10 9 8 16 16 C 1.50780 * 108.86548 * 180.02562 * 14 13 12 17 17 N 1.46631 * 107.69564 * 0.02562 * 16 14 13 18 18 C 1.36944 * 126.55826 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00272 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00147 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47204 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47312 * 119.99647 * 22 20 18 25 25 H 1.48498 * 109.47544 * 240.00172 * 22 20 18 26 26 C 1.46630 * 106.87938 * 359.97438 * 17 16 14 27 27 N 1.34399 * 108.45911 * 0.24576 * 5 4 3 28 28 N 1.28753 * 109.52471 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46856 * 300.00385 * 1 2 3 30 30 H 1.08997 * 109.46493 * 60.00191 * 1 2 3 31 31 H 1.08996 * 109.46737 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47137 * 239.99172 * 2 1 3 33 33 H 1.09007 * 109.46537 * 119.99816 * 2 1 3 34 34 H 1.08002 * 126.58390 * 0.02761 * 4 3 2 35 35 H 0.96998 * 119.99928 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47084 * 300.00531 * 9 8 6 37 37 H 1.08998 * 109.46630 * 60.00140 * 9 8 6 38 38 H 1.07998 * 120.01778 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.94412 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.94979 * 0.02562 * 15 10 9 41 41 H 1.08999 * 109.80834 * 119.54613 * 16 14 13 42 42 H 1.08993 * 109.81451 * 240.44756 * 16 14 13 43 43 H 0.97003 * 120.00387 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.81365 * 240.45430 * 26 17 16 45 45 H 1.09006 * 109.81460 * 119.54539 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0548 3.2307 0.5051 6 6 3.9175 4.2157 1.1849 7 8 4.5429 3.8940 2.1767 8 7 4.0123 5.4721 0.7065 9 6 4.8695 6.4500 1.3812 10 6 4.7984 7.7674 0.6527 11 6 3.8450 8.7035 1.0078 12 6 3.7807 9.9105 0.3388 13 6 4.6698 10.1845 -0.6864 14 6 5.6218 9.2497 -1.0410 15 6 5.6896 8.0425 -0.3664 16 6 6.4492 9.8020 -2.1740 17 7 5.9381 11.1400 -2.4881 18 6 6.4101 11.9873 -3.4550 19 1 7.2407 11.6878 -4.0768 20 6 5.8200 13.2305 -3.6365 21 7 4.8073 13.5953 -2.8791 22 14 6.4632 14.3860 -4.9558 23 1 7.5996 13.7445 -5.6645 24 1 5.3785 14.6828 -5.9256 25 1 6.9234 15.6496 -4.3258 26 6 4.8251 11.3972 -1.5688 27 7 2.3164 3.4595 -0.5943 28 7 1.6864 2.3851 -0.9208 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.3267 1.4396 1.7333 35 1 3.5131 5.7288 -0.0845 36 1 4.5292 6.5842 2.4079 37 1 5.8985 6.0907 1.3834 38 1 3.1505 8.4910 1.8070 39 1 3.0361 10.6418 0.6166 40 1 6.4370 7.3127 -0.6408 41 1 7.4941 9.8679 -1.8705 42 1 6.3574 9.1566 -3.0474 43 1 4.3952 14.4643 -3.0056 44 1 3.9086 11.5620 -2.1353 45 1 5.0452 12.2726 -0.9578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054288412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:19 Heat of formation + Delta-G solvation = 117.978550 kcal Electronic energy + Delta-G solvation = -27613.857978 eV Core-core repulsion = 23634.354318 eV Total energy + Delta-G solvation = -3979.503660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53360 -39.88223 -39.19907 -36.34140 -35.87979 -34.49911 -32.26647 -31.75788 -31.32782 -30.61269 -29.61992 -27.47579 -26.02652 -25.13540 -24.73867 -23.24831 -22.17036 -21.98402 -20.53923 -20.39054 -20.05766 -18.39698 -16.99748 -16.74629 -16.54492 -16.21848 -15.54369 -15.38703 -15.01860 -14.89403 -14.69822 -14.41628 -14.28628 -14.18838 -13.81714 -13.44311 -13.17226 -12.98335 -12.95385 -12.58054 -12.40936 -12.11521 -11.92740 -11.81533 -11.64439 -11.52196 -11.49899 -11.06420 -10.84671 -10.76837 -10.45287 -10.36800 -10.17160 -10.09335 -9.78666 -9.65448 -9.14331 -8.94021 -8.37382 -7.99261 -6.83472 -5.80301 -3.13430 0.79058 1.44708 1.55786 1.67930 1.79224 3.10447 3.11364 3.38290 3.43466 3.46270 3.80998 3.89652 4.17494 4.20187 4.39795 4.42273 4.46954 4.62208 4.76703 4.82812 4.91181 5.01280 5.13940 5.28517 5.34821 5.39144 5.44646 5.50561 5.53983 5.61509 5.70074 5.90064 5.96005 6.06280 6.14811 6.26912 6.53641 6.57650 6.58647 6.80546 6.83027 7.08856 7.31278 7.35394 7.39692 7.55346 7.66375 7.70977 8.01991 8.14734 9.12799 9.72662 10.39872 11.33908 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.001863 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.622092 B =15027.112506 C =15668.931655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.362 5.362 4 C 0.092 3.908 5 C -0.102 4.102 6 C 0.604 3.396 7 O -0.544 6.544 8 N -0.707 5.707 9 C 0.171 3.829 10 C -0.133 4.133 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.082 4.082 16 C 0.176 3.824 17 N -0.601 5.601 18 C -0.225 4.225 19 H 0.084 0.916 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.205 3.795 27 N -0.202 5.202 28 N -0.061 5.061 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.205 0.795 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.254 0.746 44 H 0.065 0.935 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -27.425 10.342 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.147 5.147 4 C -0.065 4.065 5 C -0.241 4.241 6 C 0.388 3.612 7 O -0.421 6.421 8 N -0.357 5.357 9 C 0.048 3.952 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.081 4.081 14 C -0.108 4.108 15 C -0.101 4.101 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.352 4.352 19 H 0.102 0.898 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.081 3.919 27 N -0.076 5.076 28 N -0.042 5.042 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.221 0.779 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.601 -27.118 9.694 29.785 hybrid contribution 0.506 0.350 -0.147 0.633 sum -7.095 -26.768 9.547 29.291 Atomic orbital electron populations 1.22095 0.92640 1.03763 1.04148 1.22059 0.96973 0.76120 1.05186 1.50652 1.31665 1.12370 1.20061 1.23384 0.93131 0.94035 0.95915 1.21494 1.08047 0.95221 0.99363 1.16752 0.80175 0.81279 0.83004 1.90805 1.46336 1.79207 1.25769 1.45975 1.47696 1.10014 1.32055 1.20158 0.94932 0.84695 0.95367 1.19434 0.98870 0.95695 0.99350 1.20821 0.97931 0.93536 0.99732 1.20494 0.99439 0.97044 0.96116 1.21543 0.93570 0.98135 0.94841 1.20717 0.98002 0.94122 0.97946 1.20304 0.98770 0.95860 0.95157 1.19704 0.94966 0.87881 0.92460 1.43962 1.36195 1.13145 1.39416 1.19033 1.12708 0.94882 1.08618 0.89795 1.24838 0.98188 0.97718 0.99676 1.69934 1.24921 1.21233 1.40914 0.85952 0.77937 0.80634 0.80679 1.20370 1.21631 1.21635 1.19741 0.92562 0.90016 0.89590 1.74687 1.04550 1.18252 1.10101 1.82007 1.20163 0.90245 1.11782 0.91667 0.90606 0.89822 0.88235 0.87638 0.77867 0.75247 0.90530 0.90529 0.86289 0.86116 0.86503 0.94590 0.94574 0.93527 0.91774 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.48 10.12 37.16 0.38 -0.11 16 2 C 0.12 0.33 7.26 -4.04 -0.03 0.30 16 3 N -0.36 -2.66 3.69 -61.06 -0.23 -2.88 16 4 C 0.09 0.72 11.27 -16.84 -0.19 0.53 16 5 C -0.10 -1.13 6.99 -83.55 -0.58 -1.71 16 6 C 0.60 7.52 7.82 -12.47 -0.10 7.42 16 7 O -0.54 -7.82 16.86 5.28 0.09 -7.73 16 8 N -0.71 -8.48 5.55 -62.53 -0.35 -8.83 16 9 C 0.17 2.05 5.80 -5.19 -0.03 2.02 16 10 C -0.13 -1.86 5.25 -104.65 -0.55 -2.41 16 11 C -0.10 -1.45 9.70 -39.61 -0.38 -1.84 16 12 C -0.11 -1.90 10.05 -39.54 -0.40 -2.29 16 13 C -0.08 -1.62 6.22 -104.57 -0.65 -2.27 16 14 C -0.11 -2.07 6.22 -104.57 -0.65 -2.72 16 15 C -0.08 -1.29 9.70 -39.53 -0.38 -1.67 16 16 C 0.18 3.81 7.25 -5.08 -0.04 3.78 16 17 N -0.60 -15.71 3.41 -175.68 -0.60 -16.31 16 18 C -0.22 -6.28 10.32 -15.06 -0.16 -6.43 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.88 10.44 55.49 0.58 -26.30 16 22 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.21 5.09 5.39 -5.08 -0.03 5.07 16 27 N -0.20 -2.50 12.04 32.85 0.40 -2.10 16 28 N -0.06 -0.68 13.64 60.35 0.82 0.14 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.00 8.08 -51.93 -0.42 -0.42 16 34 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.41 4.93 8.15 -40.82 -0.33 4.60 16 36 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.74 7.49 -51.93 -0.39 1.35 16 45 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -34.18 385.96 -8.52 -42.70 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.14 Total: 1.22 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.89 Total: -2.66 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.63 Total: -56.28 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.18 -8.52 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054288412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.679 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds