Wall clock time and date at job start Wed Apr 1 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47292 * 2 1 4 4 C 1.34806 * 126.59580 * 124.99547 * 3 2 1 5 5 C 1.36596 * 106.83749 * 179.75462 * 4 3 2 6 6 C 1.47527 * 125.76990 * 180.26004 * 5 4 3 7 7 O 1.21592 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00039 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00144 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47063 * 180.02562 * 9 8 6 11 11 C 1.38254 * 120.01869 * 90.00358 * 10 9 8 12 12 C 1.38146 * 119.95786 * 180.02562 * 11 10 9 13 13 C 1.38446 * 120.10503 * 359.97438 * 12 11 10 14 14 C 1.38057 * 119.93763 * 0.02562 * 13 12 11 15 15 C 1.38151 * 120.01777 * 269.72472 * 10 9 8 16 16 C 1.50780 * 108.86548 * 180.02562 * 14 13 12 17 17 N 1.46631 * 107.69564 * 0.02562 * 16 14 13 18 18 C 1.36944 * 126.55826 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00272 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00147 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47204 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47312 * 119.99647 * 22 20 18 25 25 H 1.48498 * 109.47544 * 240.00172 * 22 20 18 26 26 C 1.46630 * 106.87938 * 359.97438 * 17 16 14 27 27 N 1.34399 * 108.45911 * 0.24576 * 5 4 3 28 28 N 1.28753 * 109.52471 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46856 * 300.00385 * 1 2 3 30 30 H 1.08997 * 109.46493 * 60.00191 * 1 2 3 31 31 H 1.08996 * 109.46737 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47137 * 239.99172 * 2 1 3 33 33 H 1.09007 * 109.46537 * 119.99816 * 2 1 3 34 34 H 1.08002 * 126.58390 * 0.02761 * 4 3 2 35 35 H 0.96998 * 119.99928 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.47084 * 300.00531 * 9 8 6 37 37 H 1.08998 * 109.46630 * 60.00140 * 9 8 6 38 38 H 1.07998 * 120.01778 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.94412 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.94979 * 0.02562 * 15 10 9 41 41 H 1.08999 * 109.80834 * 119.54613 * 16 14 13 42 42 H 1.08993 * 109.81451 * 240.44756 * 16 14 13 43 43 H 0.97003 * 120.00387 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.81365 * 240.45430 * 26 17 16 45 45 H 1.09006 * 109.81460 * 119.54539 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.8716 1.9320 0.8866 5 6 3.0548 3.2307 0.5051 6 6 3.9175 4.2157 1.1849 7 8 4.5429 3.8940 2.1767 8 7 4.0123 5.4721 0.7065 9 6 4.8695 6.4500 1.3812 10 6 4.7984 7.7674 0.6527 11 6 3.8450 8.7035 1.0078 12 6 3.7807 9.9105 0.3388 13 6 4.6698 10.1845 -0.6864 14 6 5.6218 9.2497 -1.0410 15 6 5.6896 8.0425 -0.3664 16 6 6.4492 9.8020 -2.1740 17 7 5.9381 11.1400 -2.4881 18 6 6.4101 11.9873 -3.4550 19 1 7.2407 11.6878 -4.0768 20 6 5.8200 13.2305 -3.6365 21 7 4.8073 13.5953 -2.8791 22 14 6.4632 14.3860 -4.9558 23 1 7.5996 13.7445 -5.6645 24 1 5.3785 14.6828 -5.9256 25 1 6.9234 15.6496 -4.3258 26 6 4.8251 11.3972 -1.5688 27 7 2.3164 3.4595 -0.5943 28 7 1.6864 2.3851 -0.9208 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.3267 1.4396 1.7333 35 1 3.5131 5.7288 -0.0845 36 1 4.5292 6.5842 2.4079 37 1 5.8985 6.0907 1.3834 38 1 3.1505 8.4910 1.8070 39 1 3.0361 10.6418 0.6166 40 1 6.4370 7.3127 -0.6408 41 1 7.4941 9.8679 -1.8705 42 1 6.3574 9.1566 -3.0474 43 1 4.3952 14.4643 -3.0056 44 1 3.9086 11.5620 -2.1353 45 1 5.0452 12.2726 -0.9578 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054288412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:18 Heat of formation + Delta-G solvation = 94.727523 kcal Electronic energy + Delta-G solvation = -27614.866218 eV Core-core repulsion = 23634.354318 eV Total energy + Delta-G solvation = -3980.511900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.21274 -41.19192 -40.30105 -37.86756 -36.35962 -35.72648 -34.09498 -32.60528 -32.30837 -31.61296 -31.05053 -28.95877 -27.70724 -26.26225 -25.50511 -24.21919 -23.51961 -22.72355 -22.10039 -21.44939 -21.27259 -19.13175 -18.99969 -17.41703 -17.22572 -17.16459 -17.11594 -16.43031 -16.17222 -16.06468 -15.89095 -15.63763 -15.60954 -15.24455 -14.88150 -14.75978 -14.49460 -13.82995 -13.53921 -13.47128 -13.45063 -13.37816 -13.26432 -13.05798 -13.03758 -13.02827 -12.72570 -12.56797 -12.05762 -12.03751 -11.97637 -11.83099 -11.63830 -11.33344 -11.31635 -10.92649 -10.42032 -10.04450 -9.71109 -9.58702 -8.85031 -7.93718 -5.30743 0.18195 0.27384 0.46277 0.62302 1.16003 1.45603 1.47514 1.58194 2.17061 2.24772 2.44458 2.85212 3.22553 3.28733 3.44617 3.47020 3.54176 3.79667 3.87753 3.97296 3.98673 4.00982 4.14576 4.30663 4.35929 4.37467 4.51704 4.60046 4.67749 4.74949 4.77857 4.79530 4.84141 4.94334 4.98257 5.18785 5.24291 5.29445 5.31650 5.33372 5.45505 5.51075 5.52001 5.57680 5.86588 6.05679 6.09587 6.40403 6.90580 7.00146 7.11683 7.64942 8.33107 9.19755 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.001863 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.622092 B =15027.112506 C =15668.931655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.349 5.349 4 C 0.112 3.888 5 C -0.129 4.129 6 C 0.608 3.392 7 O -0.565 6.565 8 N -0.706 5.706 9 C 0.176 3.824 10 C -0.111 4.111 11 C -0.088 4.088 12 C -0.112 4.112 13 C -0.111 4.111 14 C -0.119 4.119 15 C -0.075 4.075 16 C 0.172 3.828 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.091 0.909 20 C -0.066 4.066 21 N -0.953 5.953 22 Si 0.989 3.011 23 H -0.262 1.262 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.221 3.779 27 N -0.230 5.230 28 N -0.093 5.093 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.144 0.856 34 H 0.241 0.759 35 H 0.412 0.588 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -30.941 11.904 33.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.134 5.134 4 C -0.047 4.047 5 C -0.269 4.269 6 C 0.393 3.607 7 O -0.444 6.444 8 N -0.357 5.357 9 C 0.054 3.946 10 C -0.111 4.111 11 C -0.106 4.106 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.094 4.094 16 C 0.047 3.953 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.109 0.891 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.816 3.184 23 H -0.187 1.187 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.096 3.904 27 N -0.103 5.103 28 N -0.073 5.073 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.162 0.838 34 H 0.257 0.743 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.173 0.827 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.365 -30.679 11.237 33.492 hybrid contribution 0.384 1.225 -0.543 1.394 sum -6.981 -29.454 10.694 32.103 Atomic orbital electron populations 1.22083 0.92795 1.04921 1.02584 1.22577 0.96877 0.74012 1.07751 1.50988 1.30592 1.13145 1.18711 1.23916 0.91855 0.92948 0.95965 1.21538 1.09013 0.96396 0.99953 1.16852 0.79877 0.81325 0.82632 1.90789 1.47345 1.79566 1.26683 1.45924 1.47618 1.10084 1.32031 1.20149 0.95601 0.83361 0.95528 1.19667 0.97252 0.96368 0.97841 1.21177 0.97961 0.91944 0.99505 1.20691 0.98753 0.98467 0.95149 1.21196 0.96481 0.96851 0.96718 1.20587 0.97795 0.95498 0.98085 1.20524 0.99491 0.94650 0.94753 1.19799 0.95595 0.86123 0.93789 1.44265 1.36719 1.14738 1.39343 1.19459 1.12954 0.95603 1.09202 0.89123 1.25781 0.98602 0.99406 1.02072 1.70167 1.26143 1.21315 1.42497 0.84864 0.77599 0.78137 0.77811 1.18661 1.21691 1.21617 1.19276 0.90630 0.91254 0.89204 1.74652 1.05356 1.19309 1.11014 1.81924 1.21025 0.91000 1.13346 0.92495 0.92868 0.87293 0.86948 0.83788 0.74333 0.75239 0.89148 0.89783 0.82696 0.85114 0.84128 0.93988 0.94133 0.94015 0.95827 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.60 10.12 71.98 0.73 0.13 16 2 C 0.11 0.26 7.26 86.38 0.63 0.88 16 3 N -0.35 -4.29 3.69 -347.09 -1.28 -5.57 16 4 C 0.11 1.41 11.27 83.85 0.95 2.36 16 5 C -0.13 -2.62 6.99 40.82 0.29 -2.34 16 6 C 0.61 13.76 7.82 86.69 0.68 14.44 16 7 O -0.57 -14.72 16.86 -4.01 -0.07 -14.79 16 8 N -0.71 -15.20 5.55 -470.02 -2.61 -17.80 16 9 C 0.18 3.62 5.80 85.63 0.50 4.12 16 10 C -0.11 -2.77 5.25 -19.88 -0.10 -2.87 16 11 C -0.09 -2.26 9.70 22.25 0.22 -2.04 16 12 C -0.11 -3.73 10.05 22.30 0.22 -3.50 16 13 C -0.11 -4.67 6.22 -19.83 -0.12 -4.80 16 14 C -0.12 -4.61 6.22 -19.83 -0.12 -4.73 16 15 C -0.08 -2.22 9.70 22.30 0.22 -2.01 16 16 C 0.17 7.65 7.25 85.63 0.62 8.27 16 17 N -0.62 -34.30 3.41 -709.72 -2.42 -36.71 16 18 C -0.24 -14.15 10.32 84.03 0.87 -13.28 16 19 H 0.09 4.95 7.83 -2.91 -0.02 4.93 16 20 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 21 N -0.95 -58.54 10.44 21.65 0.23 -58.32 16 22 Si 0.99 46.35 29.55 68.60 2.03 48.38 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 C 0.22 11.78 5.39 85.63 0.46 12.25 16 27 N -0.23 -5.51 12.04 -49.99 -0.60 -6.11 16 28 N -0.09 -1.97 13.64 37.02 0.51 -1.46 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.14 -0.70 8.08 -2.38 -0.02 -0.72 16 34 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 35 H 0.41 9.07 8.15 -92.71 -0.76 8.32 16 36 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 38 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.02 1.40 7.49 -2.39 -0.02 1.39 16 45 H 0.02 1.44 7.49 -2.38 -0.02 1.42 16 Total: -1.00 -79.52 385.96 2.53 -76.99 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.27 Total: 11.87 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.48 Total: 3.53 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -6.18 Total: -125.98 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.07 Total: -14.79 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -79.52 2.53 -76.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054288412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.720 kcal (2) G-P(sol) polarization free energy of solvation -79.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds