Wall clock time and date at job start Wed Apr 1 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 119.99974 * 2 1 4 4 N 1.34776 * 119.99948 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64607 * 359.97236 * 4 2 1 6 6 C 1.54330 * 107.26840 * 181.09447 * 5 4 2 7 7 C 1.55164 * 102.94081 * 22.19556 * 6 5 4 8 8 H 1.08994 * 111.00525 * 82.57116 * 7 6 5 9 9 N 1.46898 * 110.99967 * 206.42531 * 7 6 5 10 10 C 1.46904 * 111.00006 * 297.94581 * 9 7 6 11 11 C 1.53232 * 109.34126 * 172.74737 * 10 9 7 12 12 N 1.47088 * 108.52135 * 53.83422 * 11 10 9 13 13 C 1.34769 * 120.88173 * 128.83289 * 12 11 10 14 14 O 1.21283 * 119.99836 * 179.97438 * 13 12 11 15 15 C 1.50705 * 120.00232 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47049 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99933 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99912 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.46877 * 90.00221 * 21 19 17 23 23 H 1.48500 * 109.47105 * 209.99673 * 21 19 17 24 24 H 1.48499 * 109.47247 * 330.00392 * 21 19 17 25 25 C 1.47078 * 118.23446 * 308.81622 * 12 11 10 26 26 C 1.46897 * 110.99720 * 173.64833 * 9 7 6 27 27 C 1.47422 * 125.64892 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99677 * 1 2 3 30 30 H 1.09003 * 109.47402 * 59.99738 * 1 2 3 31 31 H 1.08998 * 109.88351 * 300.51046 * 5 4 2 32 32 H 1.08998 * 109.88379 * 61.67836 * 5 4 2 33 33 H 1.08999 * 110.71554 * 140.55487 * 6 5 4 34 34 H 1.08995 * 110.72298 * 263.83144 * 6 5 4 35 35 H 1.08998 * 109.49119 * 292.71409 * 10 9 7 36 36 H 1.09005 * 109.49101 * 52.78703 * 10 9 7 37 37 H 1.09000 * 109.63262 * 294.12265 * 11 10 9 38 38 H 1.08999 * 109.79324 * 173.63420 * 11 10 9 39 39 H 1.09000 * 109.47099 * 299.99502 * 15 13 12 40 40 H 1.08994 * 109.46837 * 60.00074 * 15 13 12 41 41 H 0.97000 * 120.00203 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.62687 * 291.47396 * 25 12 11 43 43 H 1.08996 * 109.79109 * 170.98851 * 25 12 11 44 44 H 1.08997 * 109.49632 * 307.21256 * 26 9 7 45 45 H 1.09002 * 109.49309 * 67.29241 * 26 9 7 46 46 H 1.08996 * 110.36785 * 274.67188 * 27 4 2 47 47 H 1.09004 * 110.36699 * 36.88600 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0005 6 6 2.7280 -3.5316 0.0269 7 6 3.9080 -2.7113 0.6120 8 1 3.8582 -2.6769 1.7003 9 7 5.1983 -3.2511 0.1628 10 6 5.3838 -4.6308 0.6320 11 6 6.6487 -5.2172 -0.0037 12 7 7.7735 -4.3103 0.2714 13 6 8.9231 -4.7745 0.7997 14 8 9.8406 -4.0125 1.0196 15 6 9.0686 -6.2405 1.1172 16 16 10.7129 -6.5478 1.8085 17 6 10.6109 -8.2858 2.0796 18 1 9.7075 -8.8200 1.8249 19 6 11.6921 -8.9687 2.6194 20 7 11.6161 -10.2671 2.8214 21 14 13.2550 -8.0449 3.0593 22 1 13.1708 -7.5706 4.4641 23 1 14.4231 -8.9498 2.9115 24 1 13.4133 -6.8799 2.1522 25 6 7.6104 -2.8834 -0.0458 26 6 6.3075 -2.3888 0.5915 27 6 3.6480 -1.3123 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.9480 -2.6299 0.8828 32 1 0.9783 -2.6436 -0.9026 33 1 2.4823 -4.3713 0.6770 34 1 2.9607 -3.8774 -0.9802 35 1 5.4864 -4.6352 1.7172 36 1 4.5206 -5.2316 0.3455 37 1 6.5080 -5.3100 -1.0806 38 1 6.8561 -6.1980 0.4242 39 1 8.3089 -6.5324 1.8424 40 1 8.9435 -6.8239 0.2051 41 1 12.3714 -10.7443 3.1990 42 1 7.5622 -2.7518 -1.1268 43 1 8.4517 -2.3178 0.3547 44 1 6.1144 -1.3636 0.2757 45 1 6.3974 -2.4245 1.6773 46 1 4.0341 -1.2662 -1.0183 47 1 4.1057 -0.5367 0.6140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065681849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:32 Heat of formation + Delta-G solvation = -50.588918 kcal Electronic energy + Delta-G solvation = -27338.061153 eV Core-core repulsion = 23454.399059 eV Total energy + Delta-G solvation = -3883.662093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74925 -39.92845 -38.53649 -37.02052 -34.51525 -32.46081 -32.08287 -31.52057 -30.31462 -29.66815 -28.42623 -26.29590 -25.62521 -24.34247 -23.15476 -21.89604 -20.86392 -19.73695 -19.18612 -17.85115 -17.53002 -17.18970 -16.65419 -15.92997 -15.76583 -15.56215 -15.30240 -15.19027 -14.97846 -14.77859 -14.55731 -14.04297 -13.86361 -13.53116 -13.35773 -13.20105 -13.18511 -13.05273 -12.82217 -12.59410 -12.42198 -12.28918 -12.06571 -11.89732 -11.56176 -11.47212 -11.28629 -11.25852 -11.10074 -11.02566 -10.60942 -10.32421 -9.87643 -9.50650 -9.15767 -9.02740 -8.97667 -8.53156 -8.51111 -6.94461 -6.31129 -4.03016 2.18456 2.43042 2.67278 2.89628 3.13893 3.31573 3.43098 3.49314 3.57184 3.79001 4.06488 4.31071 4.31621 4.43869 4.49878 4.62938 4.68563 4.72633 4.75120 4.80847 4.92391 4.93504 5.00305 5.03363 5.04135 5.08123 5.17749 5.24398 5.28906 5.32997 5.37564 5.41253 5.46278 5.56658 5.60014 5.68027 5.71105 5.76769 5.85369 5.94848 6.44803 6.57125 6.59492 7.02181 7.43558 7.70157 7.91804 8.38707 8.40121 9.15162 10.77986 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031691 B = 0.001954 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.318547 B =14323.669870 C =14893.910317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.546 6.546 4 N -0.620 5.620 5 C 0.102 3.898 6 C -0.125 4.125 7 C 0.069 3.931 8 H 0.060 0.940 9 N -0.526 5.526 10 C 0.041 3.959 11 C 0.113 3.887 12 N -0.621 5.621 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.120 3.880 26 C 0.039 3.961 27 C 0.113 3.887 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.468 14.602 -7.404 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.316 3.684 3 O -0.423 6.423 4 N -0.356 5.356 5 C -0.022 4.022 6 C -0.163 4.163 7 C -0.040 4.040 8 H 0.077 0.923 9 N -0.251 5.251 10 C -0.088 4.088 11 C -0.011 4.011 12 N -0.357 5.357 13 C 0.322 3.678 14 O -0.393 6.393 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.004 4.004 26 C -0.090 4.090 27 C -0.009 4.009 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.733 16.190 -7.522 29.697 hybrid contribution -0.512 -0.959 0.932 1.432 sum -24.245 15.231 -6.590 29.381 Atomic orbital electron populations 1.21877 0.91217 1.04403 1.05386 1.20537 0.90419 0.81935 0.75526 1.90746 1.70725 1.30664 1.50205 1.48525 1.07401 1.05979 1.73713 1.22082 0.96504 0.81526 1.02051 1.22738 0.93010 0.97218 1.03339 1.22752 0.89594 0.94105 0.97570 0.92260 1.61963 1.00870 1.02352 1.59908 1.22520 0.98753 0.89284 0.98224 1.21824 0.84540 0.93517 1.01204 1.48130 1.14576 1.08501 1.64538 1.20312 0.81324 0.90261 0.75950 1.90693 1.38700 1.58337 1.51606 1.23301 1.04653 0.94413 1.04796 1.84822 1.13060 1.11702 1.82037 1.22302 1.05372 0.90179 1.49031 0.89393 1.24709 0.98358 0.94419 0.93796 1.69934 1.32032 1.07094 1.42576 0.86739 0.82806 0.81405 0.80933 1.19228 1.19915 1.15915 1.21592 0.96838 0.81650 1.00273 1.22567 0.90717 0.97131 0.98541 1.22189 0.80504 0.96182 1.02066 0.90436 0.88637 0.88611 0.91090 0.90804 0.89742 0.88972 0.93881 0.89162 0.90488 0.88698 0.88662 0.88457 0.91932 0.90914 0.88502 0.89413 0.93952 0.90108 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.21 36.01 0.37 -0.38 16 2 C 0.53 4.64 7.96 -10.98 -0.09 4.55 16 3 O -0.55 -7.36 17.35 5.56 0.10 -7.26 16 4 N -0.62 -4.49 3.33 -170.52 -0.57 -5.06 16 5 C 0.10 0.41 5.81 -3.06 -0.02 0.39 16 6 C -0.12 -0.54 5.34 -24.89 -0.13 -0.67 16 7 C 0.07 0.45 2.71 -65.57 -0.18 0.27 16 8 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 9 N -0.53 -4.10 4.53 -223.78 -1.01 -5.12 16 10 C 0.04 0.32 5.48 -3.70 -0.02 0.30 16 11 C 0.11 1.10 6.50 -3.60 -0.02 1.08 16 12 N -0.62 -8.17 3.01 -172.46 -0.52 -8.69 16 13 C 0.53 9.51 7.73 -10.99 -0.08 9.42 16 14 O -0.52 -11.18 15.32 5.55 0.09 -11.10 16 15 C -0.12 -2.31 4.52 36.01 0.16 -2.14 16 16 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 17 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 18 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.27 13.97 55.49 0.78 -25.50 16 21 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 25 C 0.12 1.35 6.59 -3.60 -0.02 1.33 16 26 C 0.04 0.35 5.48 -3.70 -0.02 0.33 16 27 C 0.11 0.88 5.31 -2.54 -0.01 0.87 16 28 H 0.08 0.18 6.60 -51.93 -0.34 -0.17 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.20 8.02 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.08 0.27 7.94 -51.93 -0.41 -0.14 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.52 6.87 -51.93 -0.36 0.16 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.93 6.02 -51.93 -0.31 0.62 16 39 H 0.10 1.68 7.67 -51.92 -0.40 1.28 16 40 H 0.10 1.72 7.99 -51.92 -0.42 1.31 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.25 7.07 -51.93 -0.37 0.89 16 44 H 0.09 0.70 6.79 -51.93 -0.35 0.34 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.71 7.74 -51.93 -0.40 0.30 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -36.45 384.35 -9.49 -45.94 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.58 Total: -3.90 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 0.14 Total: 3.51 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -1.32 Total: -44.36 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.45 -9.49 -45.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065681849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds