Wall clock time and date at job start Wed Apr 1 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21273 * 119.99974 * 2 1 4 4 N 1.34776 * 119.99948 * 180.02562 * 2 1 3 5 5 C 1.47026 * 125.64607 * 359.97236 * 4 2 1 6 6 C 1.54330 * 107.26840 * 181.09447 * 5 4 2 7 7 C 1.55164 * 102.94081 * 22.19556 * 6 5 4 8 8 H 1.08994 * 111.00525 * 82.57116 * 7 6 5 9 9 N 1.46898 * 110.99967 * 206.42531 * 7 6 5 10 10 C 1.46904 * 111.00006 * 297.94581 * 9 7 6 11 11 C 1.53232 * 109.34126 * 172.74737 * 10 9 7 12 12 N 1.47088 * 108.52135 * 53.83422 * 11 10 9 13 13 C 1.34769 * 120.88173 * 128.83289 * 12 11 10 14 14 O 1.21283 * 119.99836 * 179.97438 * 13 12 11 15 15 C 1.50705 * 120.00232 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47049 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99933 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00069 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99912 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.46877 * 90.00221 * 21 19 17 23 23 H 1.48500 * 109.47105 * 209.99673 * 21 19 17 24 24 H 1.48499 * 109.47247 * 330.00392 * 21 19 17 25 25 C 1.47078 * 118.23446 * 308.81622 * 12 11 10 26 26 C 1.46897 * 110.99720 * 173.64833 * 9 7 6 27 27 C 1.47422 * 125.64892 * 180.02562 * 4 2 1 28 28 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99677 * 1 2 3 30 30 H 1.09003 * 109.47402 * 59.99738 * 1 2 3 31 31 H 1.08998 * 109.88351 * 300.51046 * 5 4 2 32 32 H 1.08998 * 109.88379 * 61.67836 * 5 4 2 33 33 H 1.08999 * 110.71554 * 140.55487 * 6 5 4 34 34 H 1.08995 * 110.72298 * 263.83144 * 6 5 4 35 35 H 1.08998 * 109.49119 * 292.71409 * 10 9 7 36 36 H 1.09005 * 109.49101 * 52.78703 * 10 9 7 37 37 H 1.09000 * 109.63262 * 294.12265 * 11 10 9 38 38 H 1.08999 * 109.79324 * 173.63420 * 11 10 9 39 39 H 1.09000 * 109.47099 * 299.99502 * 15 13 12 40 40 H 1.08994 * 109.46837 * 60.00074 * 15 13 12 41 41 H 0.97000 * 120.00203 * 180.02562 * 20 19 17 42 42 H 1.09006 * 109.62687 * 291.47396 * 25 12 11 43 43 H 1.08996 * 109.79109 * 170.98851 * 25 12 11 44 44 H 1.08997 * 109.49632 * 307.21256 * 26 9 7 45 45 H 1.09002 * 109.49309 * 67.29241 * 26 9 7 46 46 H 1.08996 * 110.36785 * 274.67188 * 27 4 2 47 47 H 1.09004 * 110.36699 * 36.88600 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0005 6 6 2.7280 -3.5316 0.0269 7 6 3.9080 -2.7113 0.6120 8 1 3.8582 -2.6769 1.7003 9 7 5.1983 -3.2511 0.1628 10 6 5.3838 -4.6308 0.6320 11 6 6.6487 -5.2172 -0.0037 12 7 7.7735 -4.3103 0.2714 13 6 8.9231 -4.7745 0.7997 14 8 9.8406 -4.0125 1.0196 15 6 9.0686 -6.2405 1.1172 16 16 10.7129 -6.5478 1.8085 17 6 10.6109 -8.2858 2.0796 18 1 9.7075 -8.8200 1.8249 19 6 11.6921 -8.9687 2.6194 20 7 11.6161 -10.2671 2.8214 21 14 13.2550 -8.0449 3.0593 22 1 13.1708 -7.5706 4.4641 23 1 14.4231 -8.9498 2.9115 24 1 13.4133 -6.8799 2.1522 25 6 7.6104 -2.8834 -0.0458 26 6 6.3075 -2.3888 0.5915 27 6 3.6480 -1.3123 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.9480 -2.6299 0.8828 32 1 0.9783 -2.6436 -0.9026 33 1 2.4823 -4.3713 0.6770 34 1 2.9607 -3.8774 -0.9802 35 1 5.4864 -4.6352 1.7172 36 1 4.5206 -5.2316 0.3455 37 1 6.5080 -5.3100 -1.0806 38 1 6.8561 -6.1980 0.4242 39 1 8.3089 -6.5324 1.8424 40 1 8.9435 -6.8239 0.2051 41 1 12.3714 -10.7443 3.1990 42 1 7.5622 -2.7518 -1.1268 43 1 8.4517 -2.3178 0.3547 44 1 6.1144 -1.3636 0.2757 45 1 6.3974 -2.4245 1.6773 46 1 4.0341 -1.2662 -1.0183 47 1 4.1057 -0.5367 0.6140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065681849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:31 Heat of formation + Delta-G solvation = -77.392578 kcal Electronic energy + Delta-G solvation = -27339.223447 eV Core-core repulsion = 23454.399059 eV Total energy + Delta-G solvation = -3884.824387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48500 -40.90756 -39.44166 -37.87653 -35.47467 -34.67074 -32.93189 -32.19605 -31.00214 -30.60644 -29.20164 -27.86313 -27.08099 -25.05008 -23.79473 -22.79314 -21.50458 -20.42979 -20.27904 -19.55383 -18.42062 -18.05466 -17.52227 -17.19543 -16.90809 -16.77606 -16.52367 -16.08879 -15.88652 -15.68813 -15.44143 -15.22685 -14.94952 -14.69245 -14.64627 -14.17513 -13.92852 -13.73538 -13.52380 -13.43734 -13.35005 -13.24739 -13.02623 -12.98166 -12.86584 -12.67523 -12.57852 -12.29390 -12.06517 -11.87103 -11.84426 -11.71883 -11.17486 -11.02907 -10.94650 -10.52001 -9.91209 -9.72175 -9.39773 -9.00793 -8.51697 -6.22554 0.96559 1.30499 1.45264 1.49708 1.52828 1.55768 1.89628 2.04943 2.24516 2.66779 2.79515 2.86626 3.28844 3.49414 3.64951 3.84266 3.85300 3.96685 4.03560 4.15574 4.19713 4.26285 4.26743 4.31695 4.37464 4.39937 4.47861 4.52962 4.60425 4.62631 4.71251 4.79021 4.79881 4.83792 4.86876 4.98695 5.03577 5.06863 5.19382 5.25850 5.43697 5.70881 5.87102 5.93202 6.11445 6.25277 6.48251 6.93801 7.05228 7.08673 8.60379 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031691 B = 0.001954 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.318547 B =14323.669870 C =14893.910317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.515 3.485 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.098 3.902 6 C -0.117 4.117 7 C 0.074 3.926 8 H 0.054 0.946 9 N -0.523 5.523 10 C 0.046 3.954 11 C 0.105 3.895 12 N -0.609 5.609 13 C 0.533 3.467 14 O -0.566 6.566 15 C -0.104 4.104 16 S -0.181 6.181 17 C -0.526 4.526 18 H 0.065 0.935 19 C 0.047 3.953 20 N -0.915 5.915 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.239 1.239 25 C 0.119 3.881 26 C 0.048 3.952 27 C 0.112 3.888 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.033 0.967 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.028 0.972 46 H 0.074 0.926 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.080 14.281 -8.183 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.306 3.694 3 O -0.488 6.488 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.155 4.155 7 C -0.035 4.035 8 H 0.072 0.928 9 N -0.248 5.248 10 C -0.082 4.082 11 C -0.018 4.018 12 N -0.343 5.343 13 C 0.321 3.679 14 O -0.444 6.444 15 C -0.255 4.255 16 S 0.046 5.954 17 C -0.674 4.674 18 H 0.084 0.916 19 C -0.158 4.158 20 N -0.553 5.553 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.163 1.163 25 C -0.004 4.004 26 C -0.081 4.081 27 C -0.011 4.011 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.418 15.821 -8.322 31.897 hybrid contribution 0.124 -0.841 1.091 1.383 sum -26.293 14.980 -7.231 31.113 Atomic orbital electron populations 1.21900 0.87647 1.06470 1.05972 1.21398 0.92165 0.81390 0.74401 1.90712 1.72176 1.32828 1.53113 1.48672 1.07214 1.07100 1.72463 1.22352 0.96664 0.79338 1.04058 1.22764 0.91559 0.97423 1.03731 1.22709 0.89752 0.93832 0.97245 0.92791 1.61973 1.00887 1.02221 1.59700 1.22532 0.98840 0.89445 0.97428 1.22152 0.83938 0.93002 1.02666 1.48160 1.13908 1.09852 1.62377 1.20070 0.82219 0.89266 0.76346 1.90677 1.40661 1.58994 1.54097 1.23258 1.00735 0.95999 1.05475 1.84793 1.18446 1.09205 1.82973 1.22431 1.04560 0.91872 1.48507 0.91637 1.25515 1.01256 0.95198 0.93857 1.70005 1.33283 1.08356 1.43609 0.85906 0.79803 0.80316 0.80590 1.18817 1.18308 1.16269 1.21702 0.97292 0.80228 1.01170 1.22427 0.90286 0.97942 0.97431 1.22103 0.81311 0.96428 1.01293 0.87588 0.88055 0.87912 0.89143 0.88719 0.87755 0.88603 0.94910 0.85963 0.88600 0.88509 0.86971 0.86799 0.91377 0.89434 0.90537 0.88438 0.95341 0.90777 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.21 71.24 0.73 -0.32 16 2 C 0.51 8.64 7.96 87.66 0.70 9.34 16 3 O -0.61 -16.88 17.35 -3.01 -0.05 -16.93 16 4 N -0.62 -7.91 3.33 -811.81 -2.70 -10.61 16 5 C 0.10 0.41 5.81 86.73 0.50 0.92 16 6 C -0.12 -0.54 5.34 31.79 0.17 -0.37 16 7 C 0.07 0.80 2.71 46.31 0.13 0.92 16 8 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 9 N -0.52 -6.94 4.53 -861.92 -3.90 -10.84 16 10 C 0.05 0.57 5.48 86.38 0.47 1.05 16 11 C 0.10 1.75 6.50 86.34 0.56 2.31 16 12 N -0.61 -15.20 3.01 -817.92 -2.46 -17.66 16 13 C 0.53 18.72 7.73 87.66 0.68 19.40 16 14 O -0.57 -24.69 15.32 -3.04 -0.05 -24.73 16 15 C -0.10 -3.87 4.52 71.24 0.32 -3.55 16 16 S -0.18 -9.12 18.55 -56.49 -1.05 -10.17 16 17 C -0.53 -30.21 10.04 67.95 0.68 -29.53 16 18 H 0.07 3.93 8.03 -2.91 -0.02 3.90 16 19 C 0.05 2.75 5.50 84.86 0.47 3.22 16 20 N -0.91 -55.00 13.97 21.65 0.30 -54.70 16 21 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 22 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 25 C 0.12 2.59 6.59 86.35 0.57 3.16 16 26 C 0.05 0.83 5.48 86.39 0.47 1.30 16 27 C 0.11 1.66 5.31 86.85 0.46 2.12 16 28 H 0.11 0.06 6.60 -2.39 -0.02 0.04 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.10 8.02 -2.39 -0.02 0.08 16 32 H 0.09 0.09 8.09 -2.39 -0.02 0.07 16 33 H 0.10 0.14 7.94 -2.39 -0.02 0.12 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.12 0.82 6.87 -2.38 -0.02 0.81 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.62 6.02 -2.39 -0.01 1.61 16 39 H 0.11 3.80 7.67 -2.40 -0.02 3.78 16 40 H 0.11 3.87 7.99 -2.40 -0.02 3.85 16 41 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.08 2.02 7.07 -2.39 -0.02 2.01 16 44 H 0.10 1.52 6.79 -2.39 -0.02 1.50 16 45 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.04 7.74 -2.38 -0.02 1.02 16 Total: -1.00 -82.26 384.35 -0.17 -82.43 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.92 Total: 6.47 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.91 Total: 9.96 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -8.76 Total: -93.81 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.10 Total: -41.66 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.17 kcal Total: -82.26 -0.17 -82.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065681849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.036 kcal (2) G-P(sol) polarization free energy of solvation -82.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds