Wall clock time and date at job start Wed Apr 1 2020 01:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00270 * 2 1 4 4 N 1.34780 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64740 * 359.97436 * 4 2 1 6 6 C 1.54323 * 107.26947 * 178.98953 * 5 4 2 7 7 C 1.55158 * 102.94414 * 337.80043 * 6 5 4 8 8 H 1.08998 * 111.00306 * 277.39516 * 7 6 5 9 9 N 1.46902 * 111.00229 * 153.57642 * 7 6 5 10 10 C 1.46902 * 110.99660 * 63.55278 * 9 7 6 11 11 C 1.53235 * 109.33721 * 187.25119 * 10 9 7 12 12 N 1.47079 * 108.52294 * 306.16749 * 11 10 9 13 13 C 1.34769 * 120.88265 * 231.18517 * 12 11 10 14 14 O 1.21282 * 120.00258 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00079 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47288 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00314 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99353 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00147 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99790 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47056 * 90.00079 * 21 19 17 23 23 H 1.48499 * 109.47156 * 330.00077 * 21 19 17 24 24 H 1.48497 * 109.47076 * 210.00137 * 21 19 17 25 25 C 1.47079 * 118.23428 * 51.45944 * 12 11 10 26 26 C 1.46901 * 110.99618 * 187.84937 * 9 7 6 27 27 C 1.47424 * 125.64833 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47008 * 269.99730 * 1 2 3 29 29 H 1.08991 * 109.47373 * 29.99376 * 1 2 3 30 30 H 1.09001 * 109.47232 * 149.99672 * 1 2 3 31 31 H 1.09000 * 109.88538 * 59.56689 * 5 4 2 32 32 H 1.09003 * 110.00924 * 298.47642 * 5 4 2 33 33 H 1.09009 * 110.71710 * 219.44301 * 6 5 4 34 34 H 1.09000 * 110.72392 * 96.16930 * 6 5 4 35 35 H 1.08998 * 109.49421 * 67.29297 * 10 9 7 36 36 H 1.09004 * 109.51217 * 307.22336 * 10 9 7 37 37 H 1.09004 * 109.62893 * 186.45806 * 11 10 9 38 38 H 1.09004 * 109.79258 * 65.97297 * 11 10 9 39 39 H 1.09003 * 109.46675 * 60.00762 * 15 13 12 40 40 H 1.08993 * 109.47573 * 300.00563 * 15 13 12 41 41 H 0.97008 * 119.99647 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.63348 * 68.25208 * 25 12 11 43 43 H 1.09004 * 109.63086 * 188.83238 * 25 12 11 44 44 H 1.08998 * 109.49208 * 292.70571 * 26 9 7 45 45 H 1.08999 * 109.49146 * 52.76306 * 26 9 7 46 46 H 1.08999 * 110.36726 * 85.24567 * 27 4 2 47 47 H 1.08999 * 110.36720 * 322.91262 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0006 6 6 2.7281 -3.5316 -0.0273 7 6 3.9083 -2.7115 -0.6120 8 1 3.8593 -2.6778 -1.7003 9 7 5.1984 -3.2511 -0.1620 10 6 5.3997 -4.6182 -0.6606 11 6 6.6629 -5.2090 -0.0255 12 7 7.7830 -4.2873 -0.2685 13 6 8.9414 -4.7301 -0.7958 14 8 9.0706 -5.9028 -1.0772 15 6 10.0761 -3.7681 -1.0370 16 16 11.4821 -4.6593 -1.7476 17 6 12.6292 -3.3331 -1.9208 18 1 12.3504 -2.3349 -1.6167 19 6 13.8913 -3.5713 -2.4468 20 7 14.7483 -2.5807 -2.5756 21 14 14.3741 -5.2982 -2.9707 22 1 14.0134 -5.5018 -4.3968 23 1 13.6542 -6.2895 -2.1316 24 1 15.8385 -5.4759 -2.8002 25 6 7.6074 -2.8704 0.0851 26 6 6.3049 -2.3705 -0.5598 27 6 3.6480 -1.3123 -0.0001 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 0.9484 -2.6301 -0.8842 32 1 0.9763 -2.6453 0.8999 33 1 2.4827 -4.3715 -0.6774 34 1 2.9603 -3.8772 0.9801 35 1 5.5133 -4.5971 -1.7444 36 1 4.5386 -5.2324 -0.3969 37 1 6.8811 -6.1772 -0.4764 38 1 6.5146 -5.3301 1.0476 39 1 10.3738 -3.3133 -0.0922 40 1 9.7523 -2.9903 -1.7285 41 1 15.6303 -2.7472 -2.9437 42 1 7.5457 -2.7683 1.1685 43 1 8.4502 -2.2915 -0.2927 44 1 6.4058 -2.3808 -1.6451 45 1 6.1000 -1.3543 -0.2231 46 1 4.0334 -1.2660 1.0185 47 1 4.1059 -0.5380 -0.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065681850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:34 Heat of formation + Delta-G solvation = -50.927263 kcal Electronic energy + Delta-G solvation = -27362.957940 eV Core-core repulsion = 23479.281175 eV Total energy + Delta-G solvation = -3883.676765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73704 -39.91909 -38.53009 -37.00975 -34.51184 -32.44836 -31.92631 -31.69863 -30.34416 -29.40894 -28.62094 -26.22109 -25.59560 -24.41827 -23.09194 -21.91819 -20.85804 -19.74004 -19.18430 -17.83612 -17.51560 -17.19518 -16.63409 -15.95262 -15.73382 -15.55376 -15.30423 -15.18866 -14.96787 -14.77484 -14.53716 -14.04126 -13.84145 -13.50473 -13.37320 -13.23649 -13.17774 -12.99041 -12.81035 -12.62602 -12.43892 -12.23788 -12.04675 -11.93323 -11.57145 -11.48188 -11.28261 -11.26650 -11.08493 -11.01847 -10.60020 -10.31010 -9.86884 -9.50729 -9.14968 -9.01799 -8.97521 -8.53167 -8.50496 -6.93468 -6.29720 -4.01758 2.20146 2.43756 2.67697 2.89453 3.14414 3.32129 3.43488 3.49598 3.57859 3.79329 4.06684 4.31845 4.32532 4.43175 4.48934 4.62367 4.68498 4.75184 4.78252 4.78845 4.91062 4.93418 5.00092 5.03043 5.06202 5.09371 5.17959 5.24703 5.29832 5.31779 5.39251 5.42133 5.45908 5.56496 5.60822 5.67581 5.72170 5.77631 5.84570 5.96694 6.44821 6.56600 6.60045 7.03185 7.43192 7.71628 7.93230 8.39638 8.40770 9.16382 10.79420 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002050 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.762350 B =13654.735980 C =14585.030044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.526 3.474 3 O -0.544 6.544 4 N -0.621 5.621 5 C 0.102 3.898 6 C -0.124 4.124 7 C 0.069 3.931 8 H 0.059 0.941 9 N -0.526 5.526 10 C 0.043 3.957 11 C 0.119 3.881 12 N -0.621 5.621 13 C 0.534 3.466 14 O -0.520 6.520 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.235 1.235 24 H -0.274 1.274 25 C 0.113 3.887 26 C 0.037 3.963 27 C 0.113 3.887 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.271 0.729 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.533 -0.302 6.977 32.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.422 6.422 4 N -0.357 5.357 5 C -0.021 4.021 6 C -0.163 4.163 7 C -0.040 4.040 8 H 0.077 0.923 9 N -0.251 5.251 10 C -0.085 4.085 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.322 3.678 14 O -0.394 6.394 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.159 1.159 24 H -0.199 1.199 25 C -0.010 4.010 26 C -0.092 4.092 27 C -0.010 4.010 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.877 -1.356 7.007 31.691 hybrid contribution 0.238 0.876 -0.863 1.252 sum -30.639 -0.481 6.144 31.253 Atomic orbital electron populations 1.21883 0.91224 1.04916 1.04827 1.20533 0.90426 0.81929 0.75602 1.90755 1.70766 1.30625 1.50010 1.48498 1.07389 1.05949 1.73819 1.22064 0.96452 0.81563 1.02022 1.22726 0.93046 0.97189 1.03292 1.22758 0.89614 0.94104 0.97565 0.92262 1.61968 1.00873 1.02432 1.59821 1.22511 0.98705 0.89411 0.97912 1.21597 0.84065 0.93955 1.00769 1.48137 1.13975 1.09263 1.64391 1.20309 0.82526 0.89049 0.75893 1.90686 1.80836 1.17727 1.50183 1.23306 0.97435 1.01383 1.05095 1.84790 1.08415 1.16360 1.82082 1.22303 1.00139 0.95302 1.49120 0.89377 1.24714 0.95095 0.97577 0.93942 1.69941 1.06814 1.31432 1.43424 0.86734 0.78999 0.85206 0.80901 1.19239 1.15929 1.19925 1.21923 0.97112 0.81401 1.00601 1.22658 0.90729 0.96996 0.98812 1.22206 0.80516 0.96175 1.02077 0.88741 0.88778 0.90181 0.91170 0.90856 0.89860 0.89013 0.94050 0.89403 0.88555 0.90946 0.88435 0.88630 0.91936 0.90387 0.88667 0.93745 0.89218 0.90074 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 9.90 36.00 0.36 -0.40 16 2 C 0.53 4.68 7.96 -10.99 -0.09 4.59 16 3 O -0.54 -7.43 17.36 5.55 0.10 -7.34 16 4 N -0.62 -4.51 3.33 -170.52 -0.57 -5.07 16 5 C 0.10 0.41 6.16 -3.06 -0.02 0.39 16 6 C -0.12 -0.53 5.42 -24.90 -0.13 -0.67 16 7 C 0.07 0.45 2.72 -65.56 -0.18 0.27 16 8 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 9 N -0.53 -4.10 4.53 -223.48 -1.01 -5.11 16 10 C 0.04 0.35 5.49 -3.70 -0.02 0.33 16 11 C 0.12 1.28 6.60 -3.60 -0.02 1.26 16 12 N -0.62 -8.17 3.00 -172.18 -0.52 -8.69 16 13 C 0.53 9.52 7.73 -10.99 -0.08 9.44 16 14 O -0.52 -11.10 15.31 5.56 0.09 -11.02 16 15 C -0.12 -2.35 4.52 36.01 0.16 -2.19 16 16 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 17 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 21 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 1.17 6.53 -3.36 -0.02 1.14 16 26 C 0.04 0.32 5.48 -3.46 -0.02 0.30 16 27 C 0.11 0.88 5.24 -2.53 -0.01 0.87 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.19 7.07 -51.93 -0.37 -0.18 16 31 H 0.07 0.19 7.77 -51.93 -0.40 -0.21 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.26 7.94 -51.92 -0.41 -0.15 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.53 6.93 -51.93 -0.36 0.17 16 37 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.76 7.99 -51.92 -0.41 1.34 16 40 H 0.10 1.72 7.67 -51.92 -0.40 1.32 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.00 6.02 -51.93 -0.31 0.69 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.69 6.74 -51.93 -0.35 0.34 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -36.61 384.70 -9.51 -46.12 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -7.59 Total: -3.78 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 0.13 Total: 3.39 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.32 Total: -44.61 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.36 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.61 -9.51 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065681850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.810 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds