Wall clock time and date at job start Wed Apr 1 2020 01:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00270 * 2 1 4 4 N 1.34780 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.47023 * 125.64740 * 359.97436 * 4 2 1 6 6 C 1.54323 * 107.26947 * 178.98953 * 5 4 2 7 7 C 1.55158 * 102.94414 * 337.80043 * 6 5 4 8 8 H 1.08998 * 111.00306 * 277.39516 * 7 6 5 9 9 N 1.46902 * 111.00229 * 153.57642 * 7 6 5 10 10 C 1.46902 * 110.99660 * 63.55278 * 9 7 6 11 11 C 1.53235 * 109.33721 * 187.25119 * 10 9 7 12 12 N 1.47079 * 108.52294 * 306.16749 * 11 10 9 13 13 C 1.34769 * 120.88265 * 231.18517 * 12 11 10 14 14 O 1.21282 * 120.00258 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00079 * 179.97438 * 13 12 11 16 16 S 1.80997 * 109.47288 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00314 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99353 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00147 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99790 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47056 * 90.00079 * 21 19 17 23 23 H 1.48499 * 109.47156 * 330.00077 * 21 19 17 24 24 H 1.48497 * 109.47076 * 210.00137 * 21 19 17 25 25 C 1.47079 * 118.23428 * 51.45944 * 12 11 10 26 26 C 1.46901 * 110.99618 * 187.84937 * 9 7 6 27 27 C 1.47424 * 125.64833 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47008 * 269.99730 * 1 2 3 29 29 H 1.08991 * 109.47373 * 29.99376 * 1 2 3 30 30 H 1.09001 * 109.47232 * 149.99672 * 1 2 3 31 31 H 1.09000 * 109.88538 * 59.56689 * 5 4 2 32 32 H 1.09003 * 110.00924 * 298.47642 * 5 4 2 33 33 H 1.09009 * 110.71710 * 219.44301 * 6 5 4 34 34 H 1.09000 * 110.72392 * 96.16930 * 6 5 4 35 35 H 1.08998 * 109.49421 * 67.29297 * 10 9 7 36 36 H 1.09004 * 109.51217 * 307.22336 * 10 9 7 37 37 H 1.09004 * 109.62893 * 186.45806 * 11 10 9 38 38 H 1.09004 * 109.79258 * 65.97297 * 11 10 9 39 39 H 1.09003 * 109.46675 * 60.00762 * 15 13 12 40 40 H 1.08993 * 109.47573 * 300.00563 * 15 13 12 41 41 H 0.97008 * 119.99647 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.63348 * 68.25208 * 25 12 11 43 43 H 1.09004 * 109.63086 * 188.83238 * 25 12 11 44 44 H 1.08998 * 109.49208 * 292.70571 * 26 9 7 45 45 H 1.08999 * 109.49146 * 52.76306 * 26 9 7 46 46 H 1.08999 * 110.36726 * 85.24567 * 27 4 2 47 47 H 1.08999 * 110.36720 * 322.91262 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0006 6 6 2.7281 -3.5316 -0.0273 7 6 3.9083 -2.7115 -0.6120 8 1 3.8593 -2.6778 -1.7003 9 7 5.1984 -3.2511 -0.1620 10 6 5.3997 -4.6182 -0.6606 11 6 6.6629 -5.2090 -0.0255 12 7 7.7830 -4.2873 -0.2685 13 6 8.9414 -4.7301 -0.7958 14 8 9.0706 -5.9028 -1.0772 15 6 10.0761 -3.7681 -1.0370 16 16 11.4821 -4.6593 -1.7476 17 6 12.6292 -3.3331 -1.9208 18 1 12.3504 -2.3349 -1.6167 19 6 13.8913 -3.5713 -2.4468 20 7 14.7483 -2.5807 -2.5756 21 14 14.3741 -5.2982 -2.9707 22 1 14.0134 -5.5018 -4.3968 23 1 13.6542 -6.2895 -2.1316 24 1 15.8385 -5.4759 -2.8002 25 6 7.6074 -2.8704 0.0851 26 6 6.3049 -2.3705 -0.5598 27 6 3.6480 -1.3123 -0.0001 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 0.9484 -2.6301 -0.8842 32 1 0.9763 -2.6453 0.8999 33 1 2.4827 -4.3715 -0.6774 34 1 2.9603 -3.8772 0.9801 35 1 5.5133 -4.5971 -1.7444 36 1 4.5386 -5.2324 -0.3969 37 1 6.8811 -6.1772 -0.4764 38 1 6.5146 -5.3301 1.0476 39 1 10.3738 -3.3133 -0.0922 40 1 9.7523 -2.9903 -1.7285 41 1 15.6303 -2.7472 -2.9437 42 1 7.5457 -2.7683 1.1685 43 1 8.4502 -2.2915 -0.2927 44 1 6.4058 -2.3808 -1.6451 45 1 6.1000 -1.3543 -0.2231 46 1 4.0334 -1.2660 1.0185 47 1 4.1059 -0.5380 -0.6156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065681850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:33 Heat of formation + Delta-G solvation = -77.858488 kcal Electronic energy + Delta-G solvation = -27364.125766 eV Core-core repulsion = 23479.281175 eV Total energy + Delta-G solvation = -3884.844591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47878 -40.90126 -39.43544 -37.86811 -35.47323 -34.68524 -32.81466 -32.35059 -30.98913 -30.46355 -29.31593 -27.89025 -27.01014 -25.10778 -23.74495 -22.80878 -21.50228 -20.44067 -20.27113 -19.57220 -18.41852 -18.04280 -17.52007 -17.20234 -16.91717 -16.78141 -16.51281 -16.05176 -15.93252 -15.67151 -15.44338 -15.22449 -14.95840 -14.71370 -14.58692 -14.19416 -13.94955 -13.73522 -13.51377 -13.43876 -13.35510 -13.23355 -13.02986 -12.98079 -12.80203 -12.70443 -12.65545 -12.27390 -12.08477 -11.88000 -11.80822 -11.74417 -11.18472 -11.02163 -10.95088 -10.54539 -9.91266 -9.71644 -9.39933 -9.01942 -8.52701 -6.24082 0.95589 1.30259 1.44449 1.48625 1.52617 1.57218 1.89790 2.04722 2.23858 2.65120 2.79469 2.85387 3.28985 3.47913 3.64558 3.82628 3.84522 3.98829 4.02951 4.13182 4.21081 4.23483 4.26746 4.30718 4.36676 4.39005 4.49721 4.54766 4.59509 4.64123 4.70203 4.79264 4.80817 4.83546 4.86470 4.98085 5.03054 5.08396 5.19670 5.26384 5.44366 5.69396 5.87549 5.92477 6.09990 6.22956 6.49011 6.92197 7.04291 7.09768 8.59604 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002050 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.762350 B =13654.735980 C =14585.030044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.514 3.486 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.117 4.117 7 C 0.073 3.927 8 H 0.054 0.946 9 N -0.523 5.523 10 C 0.052 3.948 11 C 0.115 3.885 12 N -0.609 5.609 13 C 0.535 3.465 14 O -0.562 6.562 15 C -0.107 4.107 16 S -0.174 6.174 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.237 1.237 24 H -0.258 1.258 25 C 0.108 3.892 26 C 0.041 3.959 27 C 0.112 3.888 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.028 0.972 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.277 0.723 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.564 -1.860 7.711 35.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.306 3.694 3 O -0.488 6.488 4 N -0.355 5.355 5 C -0.023 4.023 6 C -0.155 4.155 7 C -0.036 4.036 8 H 0.072 0.928 9 N -0.248 5.248 10 C -0.076 4.076 11 C -0.007 4.007 12 N -0.343 5.343 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.258 4.258 16 S 0.052 5.948 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.187 1.187 23 H -0.160 1.160 24 H -0.183 1.183 25 C -0.014 4.014 26 C -0.087 4.087 27 C -0.012 4.012 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -33.965 -2.922 7.762 34.963 hybrid contribution 1.035 1.458 -1.006 2.052 sum -32.930 -1.464 6.756 33.648 Atomic orbital electron populations 1.21900 0.87622 1.06142 1.06251 1.21400 0.92188 0.81380 0.74459 1.90722 1.72233 1.32835 1.53018 1.48640 1.07206 1.07073 1.72543 1.22332 0.96584 0.79317 1.04071 1.22752 0.91630 0.97418 1.03657 1.22714 0.89778 0.93833 0.97237 0.92802 1.61981 1.01062 1.02120 1.59603 1.22456 0.98438 0.89850 0.96842 1.21817 0.83939 0.92973 1.01938 1.48159 1.13008 1.10881 1.62259 1.19970 0.83363 0.87995 0.76381 1.90670 1.81767 1.19032 1.52560 1.23278 0.95698 1.01355 1.05490 1.84681 1.10478 1.16520 1.83073 1.22444 1.01234 0.95303 1.48683 0.92002 1.25576 0.95167 1.01292 0.94020 1.70020 1.07490 1.33432 1.44443 0.85858 0.79361 0.80557 0.80535 1.18699 1.16049 1.18263 1.22146 0.97931 0.79574 1.01772 1.22581 0.90444 0.97783 0.97926 1.22118 0.81329 0.96382 1.01331 0.87043 0.89082 0.87408 0.89165 0.88748 0.87874 0.88700 0.95334 0.86283 0.90065 0.89218 0.87089 0.87389 0.91354 0.88667 0.89041 0.94937 0.88157 0.90683 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.90 71.23 0.71 -0.35 16 2 C 0.51 8.70 7.96 87.66 0.70 9.40 16 3 O -0.61 -17.11 17.36 -3.04 -0.05 -17.16 16 4 N -0.62 -7.91 3.33 -811.78 -2.70 -10.61 16 5 C 0.10 0.41 6.16 86.73 0.53 0.94 16 6 C -0.12 -0.54 5.42 31.78 0.17 -0.37 16 7 C 0.07 0.80 2.72 46.31 0.13 0.92 16 8 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 9 N -0.52 -6.94 4.53 -860.95 -3.90 -10.84 16 10 C 0.05 0.72 5.49 86.38 0.47 1.20 16 11 C 0.12 2.25 6.60 86.35 0.57 2.82 16 12 N -0.61 -15.22 3.00 -817.05 -2.45 -17.67 16 13 C 0.54 18.81 7.73 87.66 0.68 19.49 16 14 O -0.56 -24.01 15.31 -3.04 -0.05 -24.06 16 15 C -0.11 -4.13 4.52 71.24 0.32 -3.81 16 16 S -0.17 -8.87 18.55 -56.49 -1.05 -9.92 16 17 C -0.53 -30.98 10.04 67.95 0.68 -30.29 16 18 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 19 C 0.04 2.65 5.50 84.86 0.47 3.12 16 20 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 21 Si 0.92 45.17 27.74 68.60 1.90 47.07 16 22 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.11 2.07 6.53 86.50 0.57 2.63 16 26 C 0.04 0.67 5.48 86.54 0.47 1.15 16 27 C 0.11 1.65 5.24 86.86 0.46 2.10 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 0.09 7.07 -2.39 -0.02 0.08 16 31 H 0.09 0.08 7.77 -2.39 -0.02 0.06 16 32 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.10 0.14 7.94 -2.38 -0.02 0.12 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.12 0.95 6.93 -2.39 -0.02 0.94 16 37 H 0.08 1.90 7.06 -2.38 -0.02 1.88 16 38 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.11 3.96 7.99 -2.39 -0.02 3.94 16 40 H 0.11 3.87 7.67 -2.40 -0.02 3.85 16 41 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.83 6.02 -2.39 -0.01 1.81 16 44 H 0.03 0.61 8.14 -2.39 -0.02 0.60 16 45 H 0.10 1.45 6.74 -2.39 -0.02 1.43 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.06 7.74 -2.39 -0.02 1.04 16 Total: -1.00 -82.64 384.70 -0.15 -82.79 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.92 Total: 7.13 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.92 Total: 8.96 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -8.75 Total: -94.81 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.10 Total: -41.22 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -82.64 -0.15 -82.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065681850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.932 kcal (2) G-P(sol) polarization free energy of solvation -82.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds