Wall clock time and date at job start Wed Apr 1 2020 01:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21273 * 120.00176 * 2 1 4 4 N 1.34782 * 119.99798 * 179.97438 * 2 1 3 5 5 C 1.47081 * 120.88072 * 354.42597 * 4 2 1 6 6 C 1.53246 * 108.51506 * 231.20191 * 5 4 2 7 7 N 1.46892 * 109.34089 * 306.16781 * 6 5 4 8 8 C 1.46903 * 111.00009 * 187.25870 * 7 6 5 9 9 H 1.08998 * 110.88291 * 297.56815 * 8 7 6 10 10 C 1.55156 * 111.00328 * 173.65054 * 8 7 6 11 11 C 1.54315 * 102.86213 * 206.22230 * 10 8 7 12 12 N 1.47028 * 107.27517 * 22.53134 * 11 10 8 13 13 C 1.34776 * 125.64754 * 180.96555 * 12 11 10 14 14 O 1.21286 * 119.99443 * 179.68899 * 13 12 11 15 15 C 1.50698 * 120.00233 * 359.68806 * 13 12 11 16 16 S 1.80995 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00046 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00311 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99784 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99785 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47000 * 180.02562 * 21 19 17 23 23 H 1.48491 * 109.47641 * 300.00348 * 21 19 17 24 24 H 1.48499 * 109.47250 * 60.00662 * 21 19 17 25 25 C 1.47424 * 108.69967 * 0.69975 * 12 11 10 26 26 C 1.46902 * 111.27073 * 63.10577 * 7 6 5 27 27 C 1.47082 * 120.88078 * 174.44174 * 4 2 1 28 28 H 1.08999 * 109.47192 * 184.87035 * 1 2 3 29 29 H 1.09006 * 109.47105 * 304.86482 * 1 2 3 30 30 H 1.08998 * 109.47140 * 64.86458 * 1 2 3 31 31 H 1.08996 * 109.63148 * 111.49375 * 5 4 2 32 32 H 1.08995 * 109.78802 * 351.00015 * 5 4 2 33 33 H 1.09008 * 109.48841 * 186.20865 * 6 5 4 34 34 H 1.09000 * 109.49430 * 66.13314 * 6 5 4 35 35 H 1.08993 * 110.72279 * 324.78589 * 10 8 7 36 36 H 1.09002 * 110.71754 * 87.88490 * 10 8 7 37 37 H 1.08997 * 109.98934 * 263.04968 * 11 10 8 38 38 H 1.09007 * 109.77415 * 141.88261 * 11 10 8 39 39 H 1.09004 * 109.46606 * 60.00256 * 15 13 12 40 40 H 1.08993 * 109.47101 * 300.00153 * 15 13 12 41 41 H 0.96998 * 120.00333 * 359.97438 * 20 19 17 42 42 H 1.08994 * 110.36670 * 94.94238 * 25 12 11 43 43 H 1.09005 * 110.36312 * 217.15551 * 25 12 11 44 44 H 1.09000 * 109.48864 * 56.85853 * 26 7 6 45 45 H 1.08998 * 109.49442 * 176.93472 * 26 7 6 46 46 H 1.09007 * 109.62791 * 248.50826 * 27 4 2 47 47 H 1.08994 * 109.62906 * 9.08335 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4702 -2.4491 0.1237 6 6 2.1239 -3.2620 1.2464 7 7 3.5660 -3.3733 0.9902 8 6 4.2018 -4.2876 1.9483 9 1 4.1054 -3.9115 2.9668 10 6 5.6901 -4.5295 1.5824 11 6 5.9714 -5.9201 2.1894 12 7 4.6780 -6.6049 2.3300 13 6 4.4937 -7.8385 2.8406 14 8 3.3760 -8.3038 2.9137 15 6 5.6764 -8.6397 3.3206 16 16 5.1072 -10.2399 3.9462 17 6 6.6483 -10.9468 4.4254 18 1 7.5635 -10.3898 4.2893 19 6 6.6860 -12.2192 4.9789 20 7 5.5706 -12.8978 5.1453 21 14 8.3200 -12.9688 5.4863 22 1 8.0900 -14.3253 6.0453 23 1 9.2092 -13.0667 4.3011 24 1 8.9599 -12.1108 6.5157 25 6 3.6153 -5.7161 1.8258 26 6 4.2142 -2.0552 1.0105 27 6 3.6463 -1.1929 -0.1217 28 1 -0.3633 -1.0239 0.0872 29 1 -0.3634 0.5875 0.8432 30 1 -0.3633 0.4365 -0.9303 31 1 1.5408 -2.9986 -0.8150 32 1 0.4227 -2.2686 0.3646 33 1 1.6822 -4.2580 1.2788 34 1 1.9615 -2.7605 2.2005 35 1 5.8242 -4.5424 0.5008 36 1 6.3275 -3.7727 2.0396 37 1 6.4417 -5.8118 3.1667 38 1 6.6212 -6.4884 1.5239 39 1 6.1827 -8.0971 4.1190 40 1 6.3680 -8.7978 2.4933 41 1 4.7221 -12.5087 4.8814 42 1 3.3908 -5.9460 0.7844 43 1 2.7179 -5.8131 2.4370 44 1 4.0229 -1.5706 1.9679 45 1 5.2886 -2.1761 0.8719 46 1 3.9260 -1.6217 -1.0841 47 1 4.0383 -0.1791 -0.0417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065688701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:42 Heat of formation + Delta-G solvation = -51.354685 kcal Electronic energy + Delta-G solvation = -27224.382518 eV Core-core repulsion = 23340.687219 eV Total energy + Delta-G solvation = -3883.695299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80633 -39.94242 -38.52070 -36.94679 -34.74266 -32.55052 -32.28282 -31.44523 -30.08481 -29.68016 -28.49965 -26.36009 -24.85753 -24.49332 -22.92531 -22.16191 -20.82241 -19.46814 -19.39575 -18.27992 -17.78316 -16.84974 -16.72550 -16.38272 -16.03580 -15.62117 -15.41806 -15.12281 -14.79269 -14.49574 -14.15061 -14.05042 -13.93088 -13.84153 -13.53518 -13.40848 -13.04260 -12.76027 -12.60042 -12.46427 -12.38285 -12.17604 -12.06423 -11.93115 -11.87109 -11.75247 -11.47388 -11.22468 -11.10005 -10.93578 -10.23230 -10.18993 -9.60937 -9.57651 -9.31167 -9.03498 -8.82563 -8.63148 -8.25024 -6.70067 -6.64190 -4.02407 2.16100 2.45284 2.69171 2.90995 3.21986 3.34603 3.36349 3.50687 3.56800 3.97353 4.05031 4.22936 4.28791 4.37302 4.44861 4.49548 4.65107 4.69735 4.79156 4.84718 4.90107 4.93997 4.94733 5.00820 5.03969 5.19635 5.20436 5.28529 5.31404 5.34854 5.40239 5.42815 5.50119 5.52172 5.59950 5.63507 5.72001 5.81765 5.93756 5.98443 6.24145 6.46083 6.51263 6.91521 7.52108 7.69026 7.89594 8.40049 8.47903 9.24913 10.79671 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.001819 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.686291 B =15392.418795 C =15999.603248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.616 5.616 5 C 0.108 3.892 6 C 0.035 3.965 7 N -0.526 5.526 8 C 0.068 3.932 9 H 0.060 0.940 10 C -0.122 4.122 11 C 0.103 3.897 12 N -0.625 5.625 13 C 0.548 3.452 14 O -0.516 6.516 15 C -0.124 4.124 16 S -0.116 6.116 17 C -0.608 4.608 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.883 5.883 21 Si 1.084 2.916 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.119 3.881 26 C 0.042 3.958 27 C 0.116 3.884 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.278 0.722 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 25.922 -11.499 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.303 3.697 3 O -0.428 6.428 4 N -0.351 5.351 5 C -0.015 4.015 6 C -0.093 4.093 7 N -0.251 5.251 8 C -0.041 4.041 9 H 0.078 0.922 10 C -0.160 4.160 11 C -0.021 4.021 12 N -0.363 5.363 13 C 0.337 3.663 14 O -0.390 6.390 15 C -0.275 4.275 16 S 0.110 5.890 17 C -0.756 4.756 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.517 5.517 21 Si 0.910 3.090 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.005 4.005 26 C -0.087 4.087 27 C -0.007 4.007 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.065 24.150 -11.160 27.287 hybrid contribution 0.764 2.218 0.086 2.347 sum -5.301 26.368 -11.074 29.086 Atomic orbital electron populations 1.22032 0.91730 1.04694 1.05439 1.20843 0.90718 0.82951 0.75215 1.90714 1.70680 1.31075 1.50299 1.48268 1.07631 1.06272 1.72905 1.22009 0.96341 0.83445 0.99728 1.22563 0.88472 1.01197 0.97113 1.61922 1.02650 1.10238 1.50271 1.22796 0.94736 0.92419 0.94105 0.92190 1.22703 0.94793 0.95964 1.02531 1.22002 0.86365 0.92562 1.01162 1.48385 1.08128 1.15799 1.63968 1.19998 0.90707 0.79361 0.76244 1.90710 1.25429 1.68561 1.54328 1.23284 0.98752 1.01624 1.03845 1.84815 1.14623 1.09413 1.80151 1.23692 0.92550 1.07068 1.52248 0.91607 1.26060 1.04872 0.92941 0.93641 1.70797 0.99159 1.39325 1.42448 0.83329 0.72807 0.76360 0.76509 1.20252 1.21119 1.21139 1.22073 0.91300 0.86924 1.00177 1.22495 0.99710 0.88523 0.97968 1.21703 0.79244 1.01049 0.98683 0.89829 0.88757 0.88542 0.90068 0.88565 0.88721 0.93991 0.89216 0.90123 0.91181 0.90878 0.89048 0.88964 0.90992 0.90519 0.90653 0.94195 0.89005 0.90510 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.80 10.11 36.00 0.36 -0.44 16 2 C 0.51 4.31 7.80 -10.98 -0.09 4.23 16 3 O -0.55 -6.96 16.55 5.56 0.09 -6.86 16 4 N -0.62 -4.30 3.01 -172.47 -0.52 -4.82 16 5 C 0.11 0.52 6.44 -3.60 -0.02 0.50 16 6 C 0.04 0.21 5.48 -3.70 -0.02 0.19 16 7 N -0.53 -3.65 4.53 -223.78 -1.01 -4.67 16 8 C 0.07 0.56 2.71 -65.56 -0.18 0.38 16 9 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 10 C -0.12 -0.88 5.35 -24.90 -0.13 -1.01 16 11 C 0.10 1.03 6.48 -3.07 -0.02 1.01 16 12 N -0.62 -8.64 3.33 -170.52 -0.57 -9.21 16 13 C 0.55 10.37 7.87 -10.99 -0.09 10.29 16 14 O -0.52 -11.72 16.12 5.55 0.09 -11.63 16 15 C -0.12 -2.53 5.35 36.00 0.19 -2.33 16 16 S -0.12 -3.13 19.60 -107.50 -2.11 -5.24 16 17 C -0.61 -17.45 9.50 30.94 0.29 -17.16 16 18 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.40 13.67 55.49 0.76 -26.64 16 21 Si 1.08 24.78 29.92 -169.99 -5.09 19.69 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.12 1.32 5.32 -2.53 -0.01 1.31 16 26 C 0.04 0.27 5.48 -3.70 -0.02 0.24 16 27 C 0.12 0.80 6.61 -3.61 -0.02 0.78 16 28 H 0.08 0.20 5.19 -51.93 -0.27 -0.07 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.26 5.25 -51.93 -0.27 -0.01 16 33 H 0.09 0.57 6.79 -51.92 -0.35 0.22 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.46 7.93 -51.93 -0.41 0.04 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 40 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 41 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.09 0.49 6.87 -51.93 -0.36 0.13 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.77 7.04 -51.93 -0.37 0.40 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -37.54 385.61 -9.81 -47.35 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.42 Total: -2.71 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 0.15 Total: -1.08 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -1.34 Total: -45.33 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.18 Total: -18.49 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.54 -9.81 -47.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065688701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.002 kcal (2) G-P(sol) polarization free energy of solvation -37.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds