Wall clock time and date at job start Wed Apr 1 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21273 * 120.00176 * 2 1 4 4 N 1.34782 * 119.99798 * 179.97438 * 2 1 3 5 5 C 1.47081 * 120.88072 * 354.42597 * 4 2 1 6 6 C 1.53246 * 108.51506 * 231.20191 * 5 4 2 7 7 N 1.46892 * 109.34089 * 306.16781 * 6 5 4 8 8 C 1.46903 * 111.00009 * 187.25870 * 7 6 5 9 9 H 1.08998 * 110.88291 * 297.56815 * 8 7 6 10 10 C 1.55156 * 111.00328 * 173.65054 * 8 7 6 11 11 C 1.54315 * 102.86213 * 206.22230 * 10 8 7 12 12 N 1.47028 * 107.27517 * 22.53134 * 11 10 8 13 13 C 1.34776 * 125.64754 * 180.96555 * 12 11 10 14 14 O 1.21286 * 119.99443 * 179.68899 * 13 12 11 15 15 C 1.50698 * 120.00233 * 359.68806 * 13 12 11 16 16 S 1.80995 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.76195 * 100.00046 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00311 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00051 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99784 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99785 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47000 * 180.02562 * 21 19 17 23 23 H 1.48491 * 109.47641 * 300.00348 * 21 19 17 24 24 H 1.48499 * 109.47250 * 60.00662 * 21 19 17 25 25 C 1.47424 * 108.69967 * 0.69975 * 12 11 10 26 26 C 1.46902 * 111.27073 * 63.10577 * 7 6 5 27 27 C 1.47082 * 120.88078 * 174.44174 * 4 2 1 28 28 H 1.08999 * 109.47192 * 184.87035 * 1 2 3 29 29 H 1.09006 * 109.47105 * 304.86482 * 1 2 3 30 30 H 1.08998 * 109.47140 * 64.86458 * 1 2 3 31 31 H 1.08996 * 109.63148 * 111.49375 * 5 4 2 32 32 H 1.08995 * 109.78802 * 351.00015 * 5 4 2 33 33 H 1.09008 * 109.48841 * 186.20865 * 6 5 4 34 34 H 1.09000 * 109.49430 * 66.13314 * 6 5 4 35 35 H 1.08993 * 110.72279 * 324.78589 * 10 8 7 36 36 H 1.09002 * 110.71754 * 87.88490 * 10 8 7 37 37 H 1.08997 * 109.98934 * 263.04968 * 11 10 8 38 38 H 1.09007 * 109.77415 * 141.88261 * 11 10 8 39 39 H 1.09004 * 109.46606 * 60.00256 * 15 13 12 40 40 H 1.08993 * 109.47101 * 300.00153 * 15 13 12 41 41 H 0.96998 * 120.00333 * 359.97438 * 20 19 17 42 42 H 1.08994 * 110.36670 * 94.94238 * 25 12 11 43 43 H 1.09005 * 110.36312 * 217.15551 * 25 12 11 44 44 H 1.09000 * 109.48864 * 56.85853 * 26 7 6 45 45 H 1.08998 * 109.49442 * 176.93472 * 26 7 6 46 46 H 1.09007 * 109.62791 * 248.50826 * 27 4 2 47 47 H 1.08994 * 109.62906 * 9.08335 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4702 -2.4491 0.1237 6 6 2.1239 -3.2620 1.2464 7 7 3.5660 -3.3733 0.9902 8 6 4.2018 -4.2876 1.9483 9 1 4.1054 -3.9115 2.9668 10 6 5.6901 -4.5295 1.5824 11 6 5.9714 -5.9201 2.1894 12 7 4.6780 -6.6049 2.3300 13 6 4.4937 -7.8385 2.8406 14 8 3.3760 -8.3038 2.9137 15 6 5.6764 -8.6397 3.3206 16 16 5.1072 -10.2399 3.9462 17 6 6.6483 -10.9468 4.4254 18 1 7.5635 -10.3898 4.2893 19 6 6.6860 -12.2192 4.9789 20 7 5.5706 -12.8978 5.1453 21 14 8.3200 -12.9688 5.4863 22 1 8.0900 -14.3253 6.0453 23 1 9.2092 -13.0667 4.3011 24 1 8.9599 -12.1108 6.5157 25 6 3.6153 -5.7161 1.8258 26 6 4.2142 -2.0552 1.0105 27 6 3.6463 -1.1929 -0.1217 28 1 -0.3633 -1.0239 0.0872 29 1 -0.3634 0.5875 0.8432 30 1 -0.3633 0.4365 -0.9303 31 1 1.5408 -2.9986 -0.8150 32 1 0.4227 -2.2686 0.3646 33 1 1.6822 -4.2580 1.2788 34 1 1.9615 -2.7605 2.2005 35 1 5.8242 -4.5424 0.5008 36 1 6.3275 -3.7727 2.0396 37 1 6.4417 -5.8118 3.1667 38 1 6.6212 -6.4884 1.5239 39 1 6.1827 -8.0971 4.1190 40 1 6.3680 -8.7978 2.4933 41 1 4.7221 -12.5087 4.8814 42 1 3.3908 -5.9460 0.7844 43 1 2.7179 -5.8131 2.4370 44 1 4.0229 -1.5706 1.9679 45 1 5.2886 -2.1761 0.8719 46 1 3.9260 -1.6217 -1.0841 47 1 4.0383 -0.1791 -0.0417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065688701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:41 Heat of formation + Delta-G solvation = -78.766837 kcal Electronic energy + Delta-G solvation = -27225.571198 eV Core-core repulsion = 23340.687219 eV Total energy + Delta-G solvation = -3884.883980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51531 -40.94390 -39.47086 -37.91018 -35.50650 -34.75494 -32.84200 -32.44461 -31.07629 -30.36134 -29.44925 -27.26681 -26.87788 -25.13470 -23.80950 -22.75031 -21.51191 -20.85116 -20.10118 -19.99305 -18.47254 -18.15434 -17.63143 -17.02336 -16.94611 -16.61497 -16.42600 -16.02713 -15.82254 -15.62095 -15.59023 -15.26515 -14.67873 -14.62085 -14.59009 -14.32711 -14.17417 -13.92669 -13.77855 -13.68807 -13.42642 -13.07699 -12.95772 -12.81458 -12.73671 -12.56694 -12.29485 -12.08748 -11.95305 -11.87029 -11.76529 -11.56660 -11.11398 -11.09924 -10.87127 -10.34140 -9.91067 -9.79079 -9.40101 -8.92934 -8.89045 -6.28713 1.12113 1.43524 1.51659 1.54967 1.60858 1.80760 1.88154 2.00458 2.33523 2.74021 3.01957 3.05788 3.26561 3.55241 3.60435 3.72190 3.86770 3.96845 3.98716 4.08439 4.10821 4.20251 4.22715 4.25855 4.30989 4.35392 4.47921 4.53939 4.57665 4.60506 4.71069 4.73154 4.77071 4.82123 4.83982 4.92868 5.01167 5.11208 5.13826 5.24191 5.40979 5.63578 5.87846 5.90680 6.14170 6.27179 6.37239 6.98257 7.05781 7.09307 8.50430 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.037241 B = 0.001819 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.686291 B =15392.418795 C =15999.603248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.505 3.495 3 O -0.602 6.602 4 N -0.615 5.615 5 C 0.109 3.891 6 C 0.033 3.967 7 N -0.525 5.525 8 C 0.080 3.920 9 H 0.057 0.943 10 C -0.109 4.109 11 C 0.091 3.909 12 N -0.615 5.615 13 C 0.547 3.453 14 O -0.566 6.566 15 C -0.100 4.100 16 S -0.195 6.195 17 C -0.614 4.614 18 H 0.076 0.924 19 C -0.019 4.019 20 N -0.912 5.912 21 Si 1.136 2.864 22 H -0.280 1.280 23 H -0.263 1.263 24 H -0.263 1.263 25 C 0.117 3.883 26 C 0.049 3.951 27 C 0.114 3.886 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.260 0.740 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.108 0.892 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 27.392 -12.313 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.483 6.483 4 N -0.349 5.349 5 C -0.013 4.013 6 C -0.096 4.096 7 N -0.250 5.250 8 C -0.029 4.029 9 H 0.075 0.925 10 C -0.147 4.147 11 C -0.031 4.031 12 N -0.350 5.350 13 C 0.334 3.666 14 O -0.445 6.445 15 C -0.251 4.251 16 S 0.032 5.968 17 C -0.761 4.761 18 H 0.094 0.906 19 C -0.222 4.222 20 N -0.547 5.547 21 Si 0.954 3.046 22 H -0.205 1.205 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.006 4.006 26 C -0.080 4.080 27 C -0.009 4.009 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.126 0.874 46 H 0.102 0.898 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.504 25.670 -12.007 28.695 hybrid contribution 0.254 1.891 0.261 1.926 sum -4.250 27.561 -11.746 30.260 Atomic orbital electron populations 1.22058 0.88693 1.06454 1.06048 1.21561 0.92267 0.82442 0.74161 1.90687 1.71958 1.32864 1.52839 1.48410 1.07844 1.06771 1.71851 1.22159 0.97291 0.82217 0.99594 1.22621 0.88132 1.01431 0.97399 1.61937 1.03091 1.10328 1.49624 1.22624 0.95258 0.90645 0.94356 0.92505 1.22700 0.94169 0.94654 1.03160 1.22372 0.84566 0.93880 1.02278 1.48320 1.10778 1.14335 1.61606 1.19688 0.89354 0.80783 0.76725 1.90690 1.26766 1.70183 1.56847 1.23147 0.99586 0.97794 1.04608 1.85054 1.16040 1.14596 1.81092 1.24024 0.93019 1.07424 1.51651 0.90616 1.27846 1.07581 0.93784 0.92989 1.70917 0.99332 1.39979 1.44516 0.82721 0.68769 0.75623 0.77501 1.20547 1.18735 1.18762 1.22213 0.90365 0.88248 0.99779 1.22460 1.00534 0.87795 0.97169 1.21693 0.79501 1.00381 0.99274 0.87392 0.88386 0.87676 0.89335 0.86144 0.88635 0.94553 0.88245 0.87563 0.90295 0.89959 0.87365 0.87286 0.92882 0.90197 0.92013 0.95193 0.87386 0.89769 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.11 71.24 0.72 -0.49 16 2 C 0.50 8.03 7.80 87.66 0.68 8.71 16 3 O -0.60 -15.41 16.55 -3.01 -0.05 -15.46 16 4 N -0.62 -7.66 3.01 -817.95 -2.46 -10.13 16 5 C 0.11 0.80 6.44 86.35 0.56 1.36 16 6 C 0.03 0.34 5.48 86.39 0.47 0.81 16 7 N -0.52 -6.04 4.53 -861.92 -3.90 -9.94 16 8 C 0.08 1.11 2.71 46.31 0.13 1.24 16 9 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 10 C -0.11 -1.17 5.35 31.78 0.17 -1.00 16 11 C 0.09 1.55 6.48 86.72 0.56 2.12 16 12 N -0.62 -16.08 3.33 -811.80 -2.70 -18.78 16 13 C 0.55 20.53 7.87 87.66 0.69 21.22 16 14 O -0.57 -26.39 16.12 -3.05 -0.05 -26.44 16 15 C -0.10 -4.00 5.35 71.24 0.38 -3.62 16 16 S -0.19 -10.73 19.60 -56.49 -1.11 -11.84 16 17 C -0.61 -35.24 9.50 67.96 0.65 -34.60 16 18 H 0.08 4.06 7.80 -2.91 -0.02 4.03 16 19 C -0.02 -1.09 5.49 84.86 0.47 -0.62 16 20 N -0.91 -57.84 13.67 21.65 0.30 -57.54 16 21 Si 1.14 48.83 29.92 68.60 2.05 50.88 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 C 0.12 2.44 5.32 86.85 0.46 2.90 16 26 C 0.05 0.51 5.48 86.38 0.47 0.99 16 27 C 0.11 1.42 6.61 86.35 0.57 2.00 16 28 H 0.11 0.17 5.19 -2.39 -0.01 0.16 16 29 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.12 0.29 5.25 -2.39 -0.01 0.28 16 33 H 0.10 1.00 6.79 -2.38 -0.02 0.98 16 34 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.70 7.93 -2.39 -0.02 0.68 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.11 3.97 8.14 -2.40 -0.02 3.96 16 41 H 0.26 17.18 7.12 -92.71 -0.66 16.52 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.48 7.74 -2.38 -0.02 1.46 16 44 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.11 0.80 6.87 -2.39 -0.02 0.78 16 46 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.08 1.29 7.04 -2.39 -0.02 1.27 16 Total: -1.00 -85.42 385.61 0.13 -85.29 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.07 Total: 12.96 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 6.98 Total: 0.99 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -8.77 Total: -96.39 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.10 Total: -41.90 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.11 Total: -11.84 kcal Total: -85.42 0.13 -85.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065688701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -85.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds