Wall clock time and date at job start Wed Apr 1 2020 01:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 119.99791 * 2 1 4 4 N 1.34777 * 120.00095 * 179.97438 * 2 1 3 5 5 C 1.47082 * 120.88029 * 180.02562 * 4 2 1 6 6 C 1.53244 * 108.51839 * 231.16131 * 5 4 2 7 7 N 1.46888 * 109.34033 * 306.16995 * 6 5 4 8 8 C 1.46906 * 111.00033 * 187.25258 * 7 6 5 9 9 H 1.08999 * 110.88451 * 51.11842 * 8 7 6 10 10 C 1.55156 * 111.00512 * 174.99796 * 8 7 6 11 11 C 1.54325 * 102.94386 * 153.57404 * 10 8 7 12 12 N 1.47023 * 107.26905 * 337.81039 * 11 10 8 13 13 C 1.34773 * 125.64529 * 178.91171 * 12 11 10 14 14 O 1.21285 * 119.99865 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.00410 * 0.02672 * 13 12 11 16 16 S 1.80999 * 109.47294 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99818 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00227 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99539 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00467 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99610 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46949 * 60.00212 * 21 19 17 23 23 H 1.48499 * 109.46811 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47598 * 300.00117 * 21 19 17 25 25 C 1.47427 * 108.70368 * 358.93967 * 12 11 10 26 26 C 1.46900 * 111.27305 * 63.10479 * 7 6 5 27 27 C 1.47075 * 120.88331 * 359.97438 * 4 2 1 28 28 H 1.08996 * 109.47493 * 240.00137 * 1 2 3 29 29 H 1.09004 * 109.47337 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46807 * 120.00203 * 1 2 3 31 31 H 1.08999 * 109.63044 * 111.45080 * 5 4 2 32 32 H 1.09005 * 109.63108 * 350.86743 * 5 4 2 33 33 H 1.09008 * 109.49105 * 186.20661 * 6 5 4 34 34 H 1.09002 * 109.51532 * 66.14867 * 6 5 4 35 35 H 1.08997 * 110.72152 * 271.94533 * 10 8 7 36 36 H 1.09008 * 110.71951 * 35.04015 * 10 8 7 37 37 H 1.09005 * 109.87662 * 97.22593 * 11 10 8 38 38 H 1.08989 * 109.88664 * 218.23580 * 11 10 8 39 39 H 1.08993 * 109.47510 * 300.00237 * 15 13 12 40 40 H 1.09002 * 109.46504 * 59.99722 * 15 13 12 41 41 H 0.97002 * 119.99637 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.36013 * 265.28565 * 25 12 11 43 43 H 1.08997 * 110.36806 * 142.96523 * 25 12 11 44 44 H 1.09000 * 109.48943 * 56.84985 * 26 7 6 45 45 H 1.08993 * 109.49832 * 176.93585 * 26 7 6 46 46 H 1.09000 * 109.62725 * 248.54839 * 27 4 2 47 47 H 1.09006 * 109.62187 * 8.93285 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6515 -1.1898 0.0011 6 6 4.1246 -2.1087 -1.1303 7 7 3.4832 -3.4227 -0.9903 8 6 4.0386 -4.3848 -1.9515 9 1 5.1274 -4.3995 -1.9015 10 6 3.4522 -5.8027 -1.7211 11 6 3.5641 -6.4538 -3.1158 12 7 3.6382 -5.3651 -4.1011 13 6 3.7645 -5.5193 -5.4340 14 8 3.8163 -4.5454 -6.1549 15 6 3.8413 -6.9019 -6.0287 16 16 4.0057 -6.7770 -7.8269 17 6 4.0708 -8.4868 -8.2476 18 1 4.0102 -9.2363 -7.4725 19 6 4.2001 -8.8702 -9.5753 20 7 4.2735 -7.9567 -10.5201 21 14 4.2698 -10.6829 -10.0214 22 1 3.0209 -11.3509 -9.5750 23 1 4.4080 -10.8255 -11.4930 24 1 5.4351 -11.3133 -9.3509 25 6 3.5521 -4.0768 -3.3895 26 6 2.0244 -3.3213 -1.1303 27 6 1.4652 -2.4521 0.0017 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 4.0115 -1.5706 0.9568 32 1 4.0333 -0.1819 -0.1619 33 1 5.2071 -2.2246 -1.0761 34 1 3.8534 -1.6720 -2.0916 35 1 4.0461 -6.3516 -0.9904 36 1 2.4113 -5.7425 -1.4031 37 1 4.4659 -7.0638 -3.1687 38 1 2.6871 -7.0717 -3.3079 39 1 4.7053 -7.4258 -5.6200 40 1 2.9332 -7.4532 -5.7846 41 1 4.3635 -8.2248 -11.4480 42 1 2.5221 -3.7205 -3.3734 43 1 4.2022 -3.3393 -3.8601 44 1 1.7819 -2.8675 -2.0913 45 1 1.5836 -4.3166 -1.0761 46 1 1.6154 -2.9540 0.9575 47 1 0.4009 -2.2785 -0.1575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065688702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:44 Heat of formation + Delta-G solvation = -46.332127 kcal Electronic energy + Delta-G solvation = -27483.165461 eV Core-core repulsion = 23599.687956 eV Total energy + Delta-G solvation = -3883.477505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88971 -39.90808 -38.48671 -36.81883 -34.63861 -32.45419 -32.24902 -31.09083 -30.16970 -29.67971 -28.30863 -26.27259 -25.47165 -24.36557 -23.55885 -22.10240 -20.60777 -19.53918 -19.01528 -17.80823 -17.61729 -16.84051 -16.66503 -16.23759 -15.95825 -15.63961 -15.18496 -14.94369 -14.83785 -14.78824 -14.22004 -14.07610 -13.87632 -13.74587 -13.56695 -13.19833 -13.01984 -12.65492 -12.61129 -12.55547 -12.51621 -12.03819 -11.97957 -11.96359 -11.69137 -11.49278 -11.40711 -11.06739 -11.05965 -10.88824 -10.79285 -10.20490 -9.85723 -9.50025 -9.25909 -9.08301 -8.85594 -8.44917 -8.27060 -6.53543 -6.23782 -3.95064 2.22959 2.52291 2.80477 2.99893 3.20965 3.21564 3.26798 3.34789 3.60736 4.08864 4.15444 4.19078 4.30303 4.38080 4.48811 4.60676 4.71693 4.74422 4.79602 4.86875 4.91703 4.95289 4.99538 5.03251 5.07835 5.11193 5.18818 5.32649 5.35351 5.42290 5.45360 5.52896 5.55969 5.58931 5.63176 5.68414 5.79980 5.89607 6.00000 6.09533 6.26872 6.51430 6.53439 6.97020 7.56456 7.59444 7.75610 8.32569 8.49278 9.21165 10.83575 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.001965 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.066597 B =14243.284481 C =14595.860449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.617 5.617 5 C 0.117 3.883 6 C 0.037 3.963 7 N -0.520 5.520 8 C 0.072 3.928 9 H 0.103 0.897 10 C -0.123 4.123 11 C 0.101 3.899 12 N -0.624 5.624 13 C 0.548 3.452 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.075 3.925 26 C 0.026 3.974 27 C 0.113 3.887 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 7.913 27.011 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.425 6.425 4 N -0.352 5.352 5 C -0.006 4.006 6 C -0.091 4.091 7 N -0.244 5.244 8 C -0.037 4.037 9 H 0.121 0.879 10 C -0.161 4.161 11 C -0.023 4.023 12 N -0.362 5.362 13 C 0.337 3.663 14 O -0.389 6.389 15 C -0.296 4.296 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.050 4.050 26 C -0.102 4.102 27 C -0.010 4.010 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.604 9.798 26.121 28.455 hybrid contribution -0.210 -2.220 -0.325 2.254 sum -5.814 7.578 25.796 27.507 Atomic orbital electron populations 1.21947 0.91674 1.05595 1.04175 1.20852 0.90723 0.82928 0.75326 1.90723 1.70793 1.31022 1.49966 1.48236 1.07161 1.06075 1.73686 1.21695 0.79320 1.00776 0.98800 1.22541 0.99976 0.88633 0.97950 1.62121 1.04107 1.08551 1.49576 1.22983 1.00165 0.92230 0.88345 0.87916 1.22752 1.02426 0.94757 0.96178 1.22026 1.02382 0.90458 0.87394 1.48395 1.75257 1.06882 1.05628 1.20079 0.75116 0.91566 0.79586 1.90715 1.48329 1.41342 1.58560 1.23496 1.04805 0.95337 1.05984 1.85420 1.95799 1.10693 0.91550 1.22809 1.58600 0.91603 0.95377 0.90958 1.25000 0.94521 0.98802 0.95268 1.70008 1.46316 1.33231 1.00699 0.86216 0.78798 0.82956 0.77485 1.19927 1.20794 1.19912 1.22849 1.01543 0.87866 0.92731 1.22695 0.88741 1.00997 0.97778 1.21889 0.96408 0.83192 0.99534 0.89320 0.88928 0.89278 0.90622 0.88584 0.89055 0.93725 0.89316 0.90023 0.91017 0.91081 0.89248 0.89296 0.92097 0.91512 0.90617 0.93311 0.88627 0.90273 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 8.68 36.00 0.31 -0.56 16 2 C 0.51 4.63 7.82 -10.99 -0.09 4.54 16 3 O -0.55 -7.36 16.54 5.55 0.09 -7.27 16 4 N -0.62 -4.56 3.01 -172.43 -0.52 -5.07 16 5 C 0.12 0.87 6.60 -3.60 -0.02 0.85 16 6 C 0.04 0.27 5.39 -3.70 -0.02 0.25 16 7 N -0.52 -3.57 4.66 -223.76 -1.04 -4.61 16 8 C 0.07 0.57 3.11 -65.56 -0.20 0.37 16 9 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 10 C -0.12 -0.83 6.46 -24.90 -0.16 -1.00 16 11 C 0.10 0.98 6.49 -3.06 -0.02 0.96 16 12 N -0.62 -8.67 3.33 -170.53 -0.57 -9.23 16 13 C 0.55 10.52 7.87 -10.99 -0.09 10.43 16 14 O -0.52 -12.04 16.12 5.55 0.09 -11.95 16 15 C -0.15 -2.96 5.35 36.00 0.19 -2.77 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 21 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.08 0.86 5.71 -2.53 -0.01 0.85 16 26 C 0.03 0.16 4.74 -3.68 -0.02 0.14 16 27 C 0.11 0.54 6.51 -3.58 -0.02 0.51 16 28 H 0.09 0.26 7.99 -51.93 -0.42 -0.16 16 29 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.09 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.86 7.06 -51.93 -0.37 0.49 16 33 H 0.09 0.59 8.04 -51.92 -0.42 0.17 16 34 H 0.04 0.40 7.82 -51.93 -0.41 -0.01 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.47 5.80 -51.92 -0.30 0.17 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.66 8.14 -51.94 -0.42 0.24 16 39 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.76 5.63 -51.93 -0.29 0.47 16 43 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 44 H 0.05 0.37 6.30 -51.93 -0.33 0.04 16 45 H 0.10 0.47 5.82 -51.93 -0.30 0.17 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 0.25 6.02 -51.93 -0.31 -0.06 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -37.25 383.48 -9.92 -47.17 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.30 Total: -3.46 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 0.05 Total: 1.69 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -1.40 Total: -44.30 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.25 -9.92 -47.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065688702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.838 kcal (2) G-P(sol) polarization free energy of solvation -37.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds