Wall clock time and date at job start Wed Apr 1 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40229 * 126.65332 * 2 1 4 4 N 1.28645 * 109.50509 * 179.97438 * 3 2 1 5 5 C 1.35423 * 110.12995 * 0.02562 * 4 3 2 6 6 C 1.39805 * 133.04192 * 180.02562 * 5 4 3 7 7 C 1.38875 * 119.55617 * 179.97438 * 6 5 4 8 8 C 1.47724 * 119.86100 * 180.02562 * 7 6 5 9 9 O 1.21569 * 119.99661 * 6.69812 * 8 7 6 10 10 N 1.34769 * 120.00072 * 186.70093 * 8 7 6 11 11 C 1.47392 * 135.85519 * 5.14047 * 10 8 7 12 12 C 1.52072 * 87.41246 * 154.39133 * 11 10 8 13 13 C 1.47399 * 135.85475 * 185.51614 * 10 8 7 14 14 C 1.53521 * 117.21373 * 267.28545 * 12 11 10 15 15 C 1.54625 * 102.69861 * 262.92788 * 14 12 11 16 16 N 1.47152 * 107.38221 * 339.38399 * 15 14 12 17 17 C 1.36931 * 125.58151 * 179.04588 * 16 15 14 18 18 H 1.08005 * 119.99807 * 186.06534 * 17 16 15 19 19 C 1.38816 * 120.00401 * 6.06884 * 17 16 15 20 20 N 1.31621 * 119.99786 * 353.13287 * 19 17 16 21 21 Si 1.86799 * 120.00066 * 173.13476 * 19 17 16 22 22 H 1.48506 * 109.46960 * 94.98709 * 21 19 17 23 23 H 1.48497 * 109.47107 * 214.98495 * 21 19 17 24 24 H 1.48493 * 109.47277 * 334.98615 * 21 19 17 25 25 C 1.47752 * 108.83434 * 359.08597 * 16 15 14 26 26 C 1.40250 * 120.28035 * 359.97438 * 7 6 5 27 27 C 1.36274 * 120.45184 * 0.02562 * 26 7 6 28 28 C 1.37259 * 126.65756 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46866 * 270.01973 * 1 2 3 30 30 H 1.08998 * 109.47580 * 30.02211 * 1 2 3 31 31 H 1.09005 * 109.46812 * 150.02448 * 1 2 3 32 32 H 1.07994 * 120.21843 * 359.95822 * 6 5 4 33 33 H 1.09001 * 113.54593 * 269.00456 * 11 10 8 34 34 H 1.09005 * 113.53923 * 39.68204 * 11 10 8 35 35 H 1.08999 * 113.53889 * 320.32357 * 13 10 8 36 36 H 1.08994 * 113.54331 * 90.99304 * 13 10 8 37 37 H 1.08997 * 110.75972 * 21.22398 * 14 12 11 38 38 H 1.08998 * 110.76429 * 144.62381 * 14 12 11 39 39 H 1.08999 * 109.87045 * 98.83519 * 15 14 12 40 40 H 1.09001 * 109.86687 * 219.93518 * 15 14 12 41 41 H 0.96999 * 120.00196 * 180.02562 * 20 19 17 42 42 H 1.09000 * 110.40836 * 263.50366 * 25 16 15 43 43 H 1.09000 * 110.40292 * 141.07758 * 25 16 15 44 44 H 1.07994 * 119.77935 * 180.02562 * 26 7 6 45 45 H 1.07995 * 119.92387 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6067 0.0004 6 6 4.6719 -1.5065 0.0012 7 6 4.4187 -2.8719 0.0012 8 6 5.5443 -3.8287 0.0027 9 8 6.6845 -3.4256 0.1267 10 7 5.3071 -5.1483 -0.1334 11 6 4.1247 -5.9893 -0.3924 12 6 5.0738 -7.0236 -0.9770 13 6 6.1163 -6.3793 -0.0815 14 6 5.3257 -6.9693 -2.4904 15 6 4.3446 -8.0323 -3.0366 16 7 4.0065 -8.9322 -1.9225 17 6 3.1489 -9.9975 -1.9908 18 1 2.8895 -10.5403 -1.0938 19 6 2.6130 -10.3799 -3.2129 20 7 2.8195 -9.6408 -4.2822 21 14 1.5987 -11.9434 -3.3398 22 1 0.1572 -11.6100 -3.2128 23 1 1.8439 -12.5871 -4.6554 24 1 1.9887 -12.8761 -2.2521 25 6 4.7433 -8.4975 -0.7178 26 6 3.0989 -3.3465 0.0010 27 6 2.0515 -2.4747 0.0002 28 6 2.2845 -1.1011 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8903 -0.5135 32 1 5.6885 -1.1421 0.0015 33 1 3.6212 -6.3238 0.5146 34 1 3.4388 -5.5625 -1.1243 35 1 7.0935 -6.2781 -0.5537 36 1 6.1707 -6.8230 0.9126 37 1 5.0862 -5.9826 -2.8868 38 1 6.3561 -7.2399 -2.7206 39 1 3.4418 -7.5473 -3.4078 40 1 4.8197 -8.5978 -3.8383 41 1 2.4447 -9.9078 -5.1361 42 1 5.6587 -9.0777 -0.6021 43 1 4.1154 -8.5960 0.1678 44 1 2.9113 -4.4100 0.0015 45 1 1.0387 -2.8494 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072855815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:07 Heat of formation + Delta-G solvation = 141.904701 kcal Electronic energy + Delta-G solvation = -29064.689404 eV Core-core repulsion = 25086.223260 eV Total energy + Delta-G solvation = -3978.466144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.24057 -42.00790 -39.92538 -38.17291 -37.29790 -35.78538 -34.08296 -32.15618 -31.84752 -30.97591 -30.06924 -28.50238 -27.50393 -27.32650 -25.79949 -24.72926 -24.15679 -22.26973 -22.08109 -21.10144 -19.81668 -19.23479 -18.61074 -18.26618 -17.55111 -17.24784 -17.06973 -16.69596 -16.67894 -16.11729 -15.74173 -15.58896 -15.28324 -15.01832 -14.50049 -14.41172 -14.22913 -13.96108 -13.79051 -13.72942 -13.62439 -13.48636 -13.25373 -13.09960 -12.87144 -12.74480 -12.72657 -12.19150 -12.01439 -11.96565 -11.84973 -11.77232 -11.74633 -11.61292 -11.14862 -10.94300 -10.59860 -10.12421 -9.78664 -9.42493 -8.78787 -7.77989 -5.10663 -0.72228 -0.29821 1.01285 1.04244 1.51906 1.54158 1.62287 1.65025 1.69889 2.56166 2.59442 2.85116 3.20595 3.32848 3.42046 3.46033 3.51505 3.62474 3.75894 3.89706 3.93432 4.05651 4.15474 4.27858 4.35832 4.39853 4.51969 4.55607 4.64582 4.65786 4.71313 4.75399 4.77634 4.81593 4.91938 4.96768 5.05309 5.08070 5.11311 5.23436 5.27276 5.34362 5.55910 5.57282 5.74231 5.85715 6.27605 6.63998 6.76990 7.01773 7.18563 7.86808 8.51331 9.32915 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.002656 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.111986 B =10538.928325 C =11966.259901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.026 5.026 4 N -0.241 5.241 5 C -0.048 4.048 6 C 0.019 3.981 7 C -0.145 4.145 8 C 0.588 3.412 9 O -0.581 6.581 10 N -0.635 5.635 11 C 0.115 3.885 12 C -0.100 4.100 13 C 0.126 3.874 14 C -0.104 4.104 15 C 0.190 3.810 16 N -0.624 5.624 17 C -0.231 4.231 18 H 0.088 0.912 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.268 1.268 25 C 0.152 3.848 26 C -0.049 4.049 27 C -0.108 4.108 28 C 0.101 3.899 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.012 0.988 40 H 0.003 0.997 41 H 0.244 0.756 42 H 0.032 0.968 43 H 0.064 0.936 44 H 0.170 0.830 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.598 14.315 11.596 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.007 5.007 4 N -0.120 5.120 5 C -0.172 4.172 6 C -0.004 4.004 7 C -0.151 4.151 8 C 0.380 3.620 9 O -0.463 6.463 10 N -0.368 5.368 11 C -0.006 4.006 12 C -0.101 4.101 13 C 0.004 3.996 14 C -0.142 4.142 15 C 0.064 3.936 16 N -0.350 5.350 17 C -0.360 4.360 18 H 0.106 0.894 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.193 1.193 25 C 0.027 3.973 26 C -0.071 4.071 27 C -0.129 4.129 28 C -0.023 4.023 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.187 0.813 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.145 16.219 11.550 20.565 hybrid contribution -0.437 -1.637 -0.756 1.856 sum -5.583 14.582 10.793 18.981 Atomic orbital electron populations 1.22576 0.69536 1.07350 1.06128 1.50511 1.09439 1.02419 1.55653 1.81531 0.94148 1.08860 1.16118 1.74834 1.12080 1.11224 1.13846 1.19946 0.94235 0.90088 1.12975 1.20469 0.98169 0.90314 0.91461 1.19539 0.94098 0.92253 1.09215 1.17744 0.87921 0.80593 0.75728 1.90762 1.24340 1.78106 1.53089 1.49577 1.14376 1.03329 1.69543 1.23237 0.89528 0.86597 1.01251 1.22001 0.97401 0.95337 0.95396 1.22867 0.96026 0.80000 1.00673 1.22261 0.99570 0.98889 0.93510 1.20912 0.94193 0.89030 0.89426 1.44806 1.50581 1.32350 1.07304 1.19444 1.18222 1.04593 0.93726 0.89409 1.25574 1.02943 1.01712 0.95679 1.70185 1.50815 1.39378 0.99639 0.85187 0.78263 0.80055 0.76593 1.21453 1.22954 1.19302 1.21311 0.95189 0.90720 0.90108 1.21659 0.89831 1.02261 0.93309 1.20135 1.02283 0.86563 1.03952 1.19779 0.90260 0.91643 1.00581 0.87849 0.87226 0.86193 0.84117 0.85909 0.89049 0.90570 0.86674 0.91225 0.91226 0.96981 0.97843 0.94714 0.95000 0.91811 0.81282 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 11.52 127.77 1.47 1.96 16 2 N -0.39 -6.74 4.11 -360.91 -1.48 -8.22 16 3 N -0.03 -0.64 13.72 37.02 0.51 -0.14 16 4 N -0.24 -6.75 12.40 -52.20 -0.65 -7.40 16 5 C -0.05 -1.23 7.26 39.57 0.29 -0.94 16 6 C 0.02 0.49 9.64 22.80 0.22 0.71 16 7 C -0.14 -3.42 5.87 -20.13 -0.12 -3.54 16 8 C 0.59 16.52 8.00 86.75 0.69 17.21 16 9 O -0.58 -20.60 17.11 -3.93 -0.07 -20.66 16 10 N -0.64 -15.31 3.68 -863.44 -3.17 -18.49 16 11 C 0.12 2.44 5.41 83.76 0.45 2.90 16 12 C -0.10 -2.67 1.06 -52.62 -0.06 -2.73 16 13 C 0.13 2.88 8.03 83.67 0.67 3.56 16 14 C -0.10 -3.44 6.41 31.32 0.20 -3.24 16 15 C 0.19 8.56 5.40 86.81 0.47 9.03 16 16 N -0.62 -28.27 3.41 -693.46 -2.36 -30.63 16 17 C -0.23 -11.72 10.26 84.04 0.86 -10.86 16 18 H 0.09 4.18 7.84 -2.91 -0.02 4.16 16 19 C -0.07 -3.54 5.48 84.86 0.47 -3.07 16 20 N -0.95 -54.53 10.35 21.65 0.22 -54.31 16 21 Si 0.97 43.20 29.56 68.60 2.03 45.23 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 C 0.15 4.95 6.70 86.23 0.58 5.53 16 26 C -0.05 -0.85 9.07 22.30 0.20 -0.65 16 27 C -0.11 -1.55 9.97 22.07 0.22 -1.33 16 28 C 0.10 1.98 6.93 39.16 0.27 2.25 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 32 H 0.14 3.78 7.64 -2.91 -0.02 3.76 16 33 H 0.12 1.94 8.03 -2.39 -0.02 1.92 16 34 H 0.09 1.93 6.82 -2.38 -0.02 1.91 16 35 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 36 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.01 0.61 7.54 -2.39 -0.02 0.59 16 40 H 0.00 0.18 7.36 -2.39 -0.02 0.16 16 41 H 0.24 13.78 8.31 -92.71 -0.77 13.00 16 42 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 44 H 0.17 2.37 4.11 -2.91 -0.01 2.36 16 45 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -75.52 371.42 2.94 -72.58 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 1.02 Total: 5.26 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.89 Total: 16.79 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -6.93 Total: -119.19 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.52 2.94 -72.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072855815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.481 kcal (2) G-P(sol) polarization free energy of solvation -75.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds