Wall clock time and date at job start Wed Apr 1 2020 01:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39796 * 125.34047 * 2 1 4 4 C 1.30194 * 110.13356 * 179.97438 * 3 2 1 5 5 C 1.45972 * 107.58634 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.11811 * 180.30763 * 5 4 3 7 7 C 1.39511 * 117.94912 * 180.19467 * 6 5 4 8 8 C 1.47682 * 120.41119 * 179.74122 * 7 6 5 9 9 O 1.21569 * 120.00220 * 187.41629 * 8 7 6 10 10 N 1.34777 * 119.99994 * 7.14689 * 8 7 6 11 11 C 1.47388 * 135.85360 * 356.58403 * 10 8 7 12 12 C 1.52068 * 87.41182 * 154.39071 * 11 10 8 13 13 C 1.47391 * 135.85303 * 176.95865 * 10 8 7 14 14 C 1.53515 * 117.21872 * 267.28258 * 12 11 10 15 15 C 1.54633 * 102.70320 * 262.93252 * 14 12 11 16 16 N 1.47147 * 107.37728 * 339.37642 * 15 14 12 17 17 C 1.36936 * 125.58137 * 179.04252 * 16 15 14 18 18 H 1.08004 * 119.99775 * 185.08719 * 17 16 15 19 19 C 1.38813 * 119.99973 * 5.08775 * 17 16 15 20 20 N 1.31612 * 119.99752 * 354.89964 * 19 17 16 21 21 Si 1.86797 * 120.00047 * 174.89751 * 19 17 16 22 22 H 1.48496 * 109.46955 * 94.99677 * 21 19 17 23 23 H 1.48501 * 109.47146 * 215.00242 * 21 19 17 24 24 H 1.48502 * 109.46921 * 334.99832 * 21 19 17 25 25 C 1.47757 * 108.84006 * 359.09461 * 16 15 14 26 26 C 1.40181 * 119.17558 * 359.46742 * 7 6 5 27 27 N 1.31187 * 121.37945 * 0.27627 * 26 7 6 28 28 C 1.32926 * 121.84424 * 359.97438 * 27 26 7 29 29 H 1.08992 * 109.47111 * 270.02906 * 1 2 3 30 30 H 1.09004 * 109.46705 * 30.02936 * 1 2 3 31 31 H 1.08995 * 109.46707 * 150.02525 * 1 2 3 32 32 H 1.08005 * 126.20971 * 180.02562 * 4 3 2 33 33 H 1.08002 * 121.02798 * 359.93431 * 6 5 4 34 34 H 1.09001 * 113.54984 * 269.00618 * 11 10 8 35 35 H 1.09010 * 113.54320 * 39.68425 * 11 10 8 36 36 H 1.08996 * 113.54778 * 320.32384 * 13 10 8 37 37 H 1.09008 * 113.54399 * 90.93063 * 13 10 8 38 38 H 1.09005 * 110.75652 * 21.23063 * 14 12 11 39 39 H 1.08998 * 110.76917 * 144.62312 * 14 12 11 40 40 H 1.08999 * 109.86671 * 98.82812 * 15 14 12 41 41 H 1.08995 * 109.85955 * 219.93304 * 15 14 12 42 42 H 0.97003 * 119.99887 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.40598 * 263.50536 * 25 16 15 44 44 H 1.08997 * 110.41128 * 141.07252 * 25 16 15 45 45 H 1.08009 * 119.31026 * 180.25598 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6596 0.0016 6 6 4.6327 -1.5893 0.0079 7 6 4.3002 -2.9442 0.0024 8 6 5.3590 -3.9738 0.0029 9 8 5.0674 -5.1456 -0.1377 10 7 6.6490 -3.6138 0.1537 11 6 7.3848 -2.3427 0.2773 12 6 8.4586 -3.1167 1.0258 13 6 7.9385 -4.3197 0.2602 14 6 8.3511 -3.1651 2.5565 15 6 9.3096 -2.0357 3.0005 16 7 10.2337 -1.7795 1.8845 17 6 11.2267 -0.8366 1.8727 18 1 11.8012 -0.6687 0.9737 19 6 11.4947 -0.0966 3.0161 20 7 10.7309 -0.2290 4.0797 21 14 12.9396 1.0870 3.0453 22 1 12.4680 2.4523 2.7009 23 1 13.5423 1.0990 4.4024 24 1 13.9571 0.6504 2.0557 25 6 9.9141 -2.7052 0.7781 26 6 2.9487 -3.3162 0.0024 27 7 1.9929 -2.4176 0.0019 28 6 2.2554 -1.1145 0.0020 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3632 -0.8902 -0.5134 32 1 4.3743 1.4724 0.0011 33 1 5.6643 -1.2694 0.0124 34 1 7.7234 -1.9409 -0.6777 35 1 6.8729 -1.6011 0.8908 36 1 7.8890 -5.2289 0.8593 37 1 8.4317 -4.4727 -0.6998 38 1 7.3312 -2.9554 2.8789 39 1 8.6874 -4.1294 2.9372 40 1 8.7403 -1.1336 3.2247 41 1 9.8701 -2.3505 3.8807 42 1 10.9179 0.2884 4.8786 43 1 10.5666 -3.5777 0.8121 44 1 10.0072 -2.1971 -0.1816 45 1 2.6888 -4.3646 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073078699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:22 Heat of formation + Delta-G solvation = 156.510032 kcal Electronic energy + Delta-G solvation = -29261.406018 eV Core-core repulsion = 25283.573208 eV Total energy + Delta-G solvation = -3977.832809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.89967 -40.79758 -38.87355 -37.61931 -35.76049 -34.21837 -32.53303 -31.94925 -30.56543 -29.52021 -28.73783 -27.19973 -26.35309 -25.87008 -24.25838 -24.03158 -23.05340 -21.24354 -20.38147 -19.87582 -18.60826 -18.11391 -17.33028 -16.86629 -16.81002 -16.18683 -15.90982 -15.64241 -15.37629 -14.86092 -14.49744 -14.33475 -14.14694 -13.86723 -13.74295 -13.53828 -13.27927 -12.91424 -12.81151 -12.52771 -12.43130 -12.35277 -11.99848 -11.88431 -11.46164 -11.04940 -10.99306 -10.79791 -10.70480 -10.52507 -10.30948 -10.15716 -10.08964 -9.90774 -9.70146 -9.49581 -9.34631 -8.75474 -8.63828 -8.51518 -6.89460 -5.77624 -3.10877 0.45564 0.59762 1.80892 2.13201 2.73348 2.79142 3.36184 3.42495 3.44185 3.61795 3.81945 3.92447 4.24324 4.32165 4.42950 4.51254 4.57369 4.69448 4.87818 4.89962 5.01104 5.09274 5.14376 5.16147 5.28353 5.41472 5.45358 5.50598 5.60777 5.66133 5.72048 5.73381 5.79498 5.89307 6.07648 6.14259 6.17830 6.39402 6.44806 6.46329 6.59321 6.64758 7.08550 7.48795 7.54964 7.56660 7.72309 7.76786 8.11404 8.18996 9.15622 9.75906 10.41309 11.34077 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.002975 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.693195 B = 9410.791288 C =11141.907300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.395 5.395 3 N -0.242 5.242 4 C 0.099 3.901 5 C -0.237 4.237 6 C 0.036 3.964 7 C -0.224 4.224 8 C 0.598 3.402 9 O -0.545 6.545 10 N -0.638 5.638 11 C 0.107 3.893 12 C -0.104 4.104 13 C 0.122 3.878 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.153 3.847 26 C 0.227 3.773 27 N -0.508 5.508 28 C 0.328 3.672 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.043 0.957 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 -1.985 -8.990 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.185 5.185 3 N -0.053 5.053 4 C -0.100 4.100 5 C -0.247 4.247 6 C 0.008 3.992 7 C -0.232 4.232 8 C 0.388 3.612 9 O -0.424 6.424 10 N -0.372 5.372 11 C -0.015 4.015 12 C -0.106 4.106 13 C 0.000 4.000 14 C -0.156 4.156 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.027 3.973 26 C 0.057 3.943 27 N -0.223 5.223 28 C 0.089 3.911 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.224 0.776 33 H 0.178 0.822 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.192 -1.680 -8.930 20.335 hybrid contribution 2.029 0.396 0.130 2.072 sum -16.162 -1.284 -8.800 18.448 Atomic orbital electron populations 1.21838 0.73255 1.04482 1.03410 1.48142 1.06437 1.00065 1.63838 1.76758 1.02764 1.07194 1.18579 1.25229 0.94945 0.92600 0.97192 1.20472 0.94016 0.94859 1.15384 1.22002 1.00077 0.90737 0.86418 1.20606 0.95513 0.93562 1.13497 1.17283 0.80287 0.87487 0.76122 1.90772 1.81671 1.18703 1.51258 1.49647 1.04318 1.11756 1.71499 1.23163 0.90174 0.87909 1.00241 1.22199 0.96653 0.94766 0.96959 1.22799 0.79971 0.97304 0.99950 1.22481 1.00497 1.01172 0.91428 1.21234 0.89402 0.93287 0.90658 1.44534 1.37283 1.38937 1.12346 1.19031 1.08506 1.11315 0.96921 0.90388 1.24804 0.99177 1.00260 0.96009 1.69960 1.38970 1.44092 1.03666 0.86142 0.82198 0.80690 0.76973 1.21685 1.21690 1.20635 1.21144 0.89943 0.93536 0.92726 1.22870 0.86177 0.98682 0.86606 1.66808 1.37113 0.98424 1.19906 1.19199 0.88741 0.88265 0.94900 0.90966 0.89316 0.89111 0.77556 0.82245 0.88906 0.89525 0.90170 0.89531 0.92088 0.91631 0.93854 0.93466 0.93730 0.95416 0.93901 0.80414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.84 11.43 59.85 0.68 1.53 16 2 N -0.39 -4.55 4.03 -67.17 -0.27 -4.82 16 3 N -0.24 -2.80 12.39 31.87 0.39 -2.41 16 4 C 0.10 1.02 12.30 -15.15 -0.19 0.83 16 5 C -0.24 -2.83 6.36 -105.20 -0.67 -3.50 16 6 C 0.04 0.41 9.34 -38.58 -0.36 0.05 16 7 C -0.22 -2.87 5.89 -104.84 -0.62 -3.48 16 8 C 0.60 8.67 8.00 -12.40 -0.10 8.57 16 9 O -0.54 -9.35 17.15 5.31 0.09 -9.26 16 10 N -0.64 -8.56 3.69 -186.92 -0.69 -9.25 16 11 C 0.11 1.35 5.86 -7.34 -0.04 1.31 16 12 C -0.10 -1.53 1.06 -155.22 -0.16 -1.70 16 13 C 0.12 1.58 8.03 -7.48 -0.06 1.52 16 14 C -0.12 -1.98 6.41 -25.61 -0.16 -2.15 16 15 C 0.18 3.97 5.40 -2.83 -0.02 3.95 16 16 N -0.60 -13.95 3.41 -170.53 -0.58 -14.53 16 17 C -0.23 -5.94 10.27 -15.06 -0.15 -6.09 16 18 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -25.70 10.33 55.49 0.57 -25.13 16 21 Si 0.91 21.09 29.56 -169.99 -5.02 16.07 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.15 2.71 6.70 -3.21 -0.02 2.69 16 26 C 0.23 2.80 10.74 -17.10 -0.18 2.62 16 27 N -0.51 -6.52 10.37 -12.03 -0.12 -6.65 16 28 C 0.33 4.20 7.96 -156.10 -1.24 2.96 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.21 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.16 1.63 3.93 -52.49 -0.21 1.42 16 34 H 0.09 1.02 8.06 -51.93 -0.42 0.60 16 35 H 0.09 1.08 6.16 -51.92 -0.32 0.76 16 36 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 37 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 1.07 7.53 -51.93 -0.39 0.67 16 41 H 0.05 1.20 7.36 -51.93 -0.38 0.81 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.04 0.71 8.00 -51.93 -0.42 0.30 16 45 H 0.18 1.94 7.66 -52.48 -0.40 1.54 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -32.98 371.45 -9.31 -42.29 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.88 Total: -0.77 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -3.39 Total: 8.86 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.70 Total: -62.78 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.98 -9.31 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073078699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.803 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds