Wall clock time and date at job start Wed Apr 1 2020 01:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39796 * 125.34047 * 2 1 4 4 C 1.30194 * 110.13356 * 179.97438 * 3 2 1 5 5 C 1.45972 * 107.58634 * 359.97438 * 4 3 2 6 6 C 1.39657 * 134.11811 * 180.30763 * 5 4 3 7 7 C 1.39511 * 117.94912 * 180.19467 * 6 5 4 8 8 C 1.47682 * 120.41119 * 179.74122 * 7 6 5 9 9 O 1.21569 * 120.00220 * 187.41629 * 8 7 6 10 10 N 1.34777 * 119.99994 * 7.14689 * 8 7 6 11 11 C 1.47388 * 135.85360 * 356.58403 * 10 8 7 12 12 C 1.52068 * 87.41182 * 154.39071 * 11 10 8 13 13 C 1.47391 * 135.85303 * 176.95865 * 10 8 7 14 14 C 1.53515 * 117.21872 * 267.28258 * 12 11 10 15 15 C 1.54633 * 102.70320 * 262.93252 * 14 12 11 16 16 N 1.47147 * 107.37728 * 339.37642 * 15 14 12 17 17 C 1.36936 * 125.58137 * 179.04252 * 16 15 14 18 18 H 1.08004 * 119.99775 * 185.08719 * 17 16 15 19 19 C 1.38813 * 119.99973 * 5.08775 * 17 16 15 20 20 N 1.31612 * 119.99752 * 354.89964 * 19 17 16 21 21 Si 1.86797 * 120.00047 * 174.89751 * 19 17 16 22 22 H 1.48496 * 109.46955 * 94.99677 * 21 19 17 23 23 H 1.48501 * 109.47146 * 215.00242 * 21 19 17 24 24 H 1.48502 * 109.46921 * 334.99832 * 21 19 17 25 25 C 1.47757 * 108.84006 * 359.09461 * 16 15 14 26 26 C 1.40181 * 119.17558 * 359.46742 * 7 6 5 27 27 N 1.31187 * 121.37945 * 0.27627 * 26 7 6 28 28 C 1.32926 * 121.84424 * 359.97438 * 27 26 7 29 29 H 1.08992 * 109.47111 * 270.02906 * 1 2 3 30 30 H 1.09004 * 109.46705 * 30.02936 * 1 2 3 31 31 H 1.08995 * 109.46707 * 150.02525 * 1 2 3 32 32 H 1.08005 * 126.20971 * 180.02562 * 4 3 2 33 33 H 1.08002 * 121.02798 * 359.93431 * 6 5 4 34 34 H 1.09001 * 113.54984 * 269.00618 * 11 10 8 35 35 H 1.09010 * 113.54320 * 39.68425 * 11 10 8 36 36 H 1.08996 * 113.54778 * 320.32384 * 13 10 8 37 37 H 1.09008 * 113.54399 * 90.93063 * 13 10 8 38 38 H 1.09005 * 110.75652 * 21.23063 * 14 12 11 39 39 H 1.08998 * 110.76917 * 144.62312 * 14 12 11 40 40 H 1.08999 * 109.86671 * 98.82812 * 15 14 12 41 41 H 1.08995 * 109.85955 * 219.93304 * 15 14 12 42 42 H 0.97003 * 119.99887 * 180.02562 * 20 19 17 43 43 H 1.09005 * 110.40598 * 263.50536 * 25 16 15 44 44 H 1.08997 * 110.41128 * 141.07252 * 25 16 15 45 45 H 1.08009 * 119.31026 * 180.25598 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6596 0.0016 6 6 4.6327 -1.5893 0.0079 7 6 4.3002 -2.9442 0.0024 8 6 5.3590 -3.9738 0.0029 9 8 5.0674 -5.1456 -0.1377 10 7 6.6490 -3.6138 0.1537 11 6 7.3848 -2.3427 0.2773 12 6 8.4586 -3.1167 1.0258 13 6 7.9385 -4.3197 0.2602 14 6 8.3511 -3.1651 2.5565 15 6 9.3096 -2.0357 3.0005 16 7 10.2337 -1.7795 1.8845 17 6 11.2267 -0.8366 1.8727 18 1 11.8012 -0.6687 0.9737 19 6 11.4947 -0.0966 3.0161 20 7 10.7309 -0.2290 4.0797 21 14 12.9396 1.0870 3.0453 22 1 12.4680 2.4523 2.7009 23 1 13.5423 1.0990 4.4024 24 1 13.9571 0.6504 2.0557 25 6 9.9141 -2.7052 0.7781 26 6 2.9487 -3.3162 0.0024 27 7 1.9929 -2.4176 0.0019 28 6 2.2554 -1.1145 0.0020 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3632 -0.8902 -0.5134 32 1 4.3743 1.4724 0.0011 33 1 5.6643 -1.2694 0.0124 34 1 7.7234 -1.9409 -0.6777 35 1 6.8729 -1.6011 0.8908 36 1 7.8890 -5.2289 0.8593 37 1 8.4317 -4.4727 -0.6998 38 1 7.3312 -2.9554 2.8789 39 1 8.6874 -4.1294 2.9372 40 1 8.7403 -1.1336 3.2247 41 1 9.8701 -2.3505 3.8807 42 1 10.9179 0.2884 4.8786 43 1 10.5666 -3.5777 0.8121 44 1 10.0072 -2.1971 -0.1816 45 1 2.6888 -4.3646 0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073078699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:21 Heat of formation + Delta-G solvation = 135.935491 kcal Electronic energy + Delta-G solvation = -29262.298197 eV Core-core repulsion = 25283.573208 eV Total energy + Delta-G solvation = -3978.724988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78196 -41.91925 -39.95388 -38.66525 -37.28829 -35.06956 -34.08079 -33.07118 -31.50491 -31.06430 -30.12756 -28.04047 -27.38029 -27.29575 -25.62267 -25.11199 -24.11883 -22.09636 -22.04784 -20.98206 -19.81024 -19.05889 -18.56048 -18.29569 -17.82513 -17.08871 -16.98118 -16.77529 -16.59812 -16.30789 -15.93329 -15.55319 -15.17635 -15.05467 -14.67852 -14.51598 -14.26058 -14.01785 -13.92322 -13.66510 -13.59945 -13.46430 -13.33675 -13.23544 -12.81995 -12.74165 -12.33229 -12.19275 -11.99424 -11.89239 -11.76698 -11.66480 -11.62118 -11.19557 -11.15663 -10.61208 -10.53954 -10.24351 -9.79612 -9.42169 -8.79122 -7.77724 -5.10889 -0.42524 -0.34112 1.03619 1.31516 1.52091 1.53651 1.61937 1.69920 1.74137 2.56064 2.65996 2.97106 3.10345 3.28020 3.34146 3.43808 3.49912 3.63831 3.65239 3.86245 3.89023 4.09823 4.23607 4.27076 4.34598 4.35550 4.40774 4.49399 4.54043 4.62027 4.68380 4.70585 4.75492 4.80328 4.91275 4.98737 5.07463 5.10136 5.22742 5.26978 5.32170 5.56720 5.63772 5.74133 5.85778 6.24767 6.27488 6.60697 6.69492 7.02728 7.18608 7.86691 8.50792 9.32899 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.002975 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.693195 B = 9410.791288 C =11141.907300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.260 5.260 4 C 0.107 3.893 5 C -0.251 4.251 6 C 0.047 3.953 7 C -0.236 4.236 8 C 0.600 3.400 9 O -0.577 6.577 10 N -0.637 5.637 11 C 0.112 3.888 12 C -0.098 4.098 13 C 0.129 3.871 14 C -0.103 4.103 15 C 0.189 3.811 16 N -0.624 5.624 17 C -0.231 4.231 18 H 0.087 0.913 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.970 3.030 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.268 1.268 25 C 0.151 3.849 26 C 0.225 3.775 27 N -0.518 5.518 28 C 0.310 3.690 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.241 0.759 33 H 0.175 0.825 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.011 0.989 41 H 0.004 0.996 42 H 0.243 0.757 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 -1.675 -10.909 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.190 5.190 3 N -0.071 5.071 4 C -0.091 4.091 5 C -0.261 4.261 6 C 0.019 3.981 7 C -0.244 4.244 8 C 0.391 3.609 9 O -0.458 6.458 10 N -0.370 5.370 11 C -0.010 4.010 12 C -0.100 4.100 13 C 0.007 3.993 14 C -0.142 4.142 15 C 0.064 3.936 16 N -0.350 5.350 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.799 3.201 22 H -0.215 1.215 23 H -0.229 1.229 24 H -0.193 1.193 25 C 0.026 3.974 26 C 0.054 3.946 27 N -0.233 5.233 28 C 0.070 3.930 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.257 0.743 33 H 0.192 0.808 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.022 0.978 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -18.267 -1.367 -10.891 21.311 hybrid contribution 2.039 0.299 0.711 2.180 sum -16.227 -1.068 -10.179 19.186 Atomic orbital electron populations 1.22098 0.71575 1.05612 1.04348 1.48499 1.07556 0.99650 1.63279 1.76747 1.03405 1.07520 1.19474 1.25806 0.95447 0.92254 0.95601 1.20717 0.93807 0.95822 1.15728 1.22095 1.00656 0.90139 0.85177 1.20503 0.95171 0.93717 1.14963 1.17430 0.80639 0.87275 0.75555 1.90754 1.82127 1.20010 1.52946 1.49606 1.04244 1.12215 1.70971 1.23277 0.88957 0.87529 1.01221 1.21994 0.95517 0.97025 0.95474 1.22841 0.79520 0.96200 1.00787 1.22265 0.99331 0.99196 0.93358 1.20915 0.89413 0.93630 0.89620 1.44806 1.36882 1.39263 1.14093 1.19442 1.08581 1.11025 0.96919 0.89483 1.25559 1.01662 1.02561 0.96109 1.70179 1.40564 1.45298 1.04002 0.85182 0.79684 0.78828 0.76381 1.21505 1.22909 1.19292 1.21318 0.91643 0.92715 0.91705 1.23027 0.86201 0.99064 0.86264 1.66822 1.37308 0.98680 1.20508 1.19509 0.89714 0.88562 0.95172 0.90105 0.87657 0.88557 0.74299 0.80838 0.86215 0.89257 0.90190 0.86957 0.91214 0.90976 0.97060 0.97754 0.94725 0.94881 0.92011 0.79672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.44 11.43 127.77 1.46 2.90 16 2 N -0.40 -8.73 4.03 -366.44 -1.48 -10.21 16 3 N -0.26 -5.62 12.39 -53.08 -0.66 -6.27 16 4 C 0.11 1.97 12.30 86.94 1.07 3.04 16 5 C -0.25 -5.56 6.36 -20.24 -0.13 -5.68 16 6 C 0.05 1.00 9.34 22.92 0.21 1.21 16 7 C -0.24 -5.69 5.89 -20.00 -0.12 -5.81 16 8 C 0.60 16.34 8.00 86.74 0.69 17.03 16 9 O -0.58 -19.11 17.15 -3.93 -0.07 -19.18 16 10 N -0.64 -15.34 3.69 -863.56 -3.19 -18.52 16 11 C 0.11 2.46 5.86 83.76 0.49 2.95 16 12 C -0.10 -2.64 1.06 -52.62 -0.06 -2.70 16 13 C 0.13 2.90 8.03 83.67 0.67 3.58 16 14 C -0.10 -3.38 6.41 31.32 0.20 -3.18 16 15 C 0.19 8.56 5.40 86.81 0.47 9.02 16 16 N -0.62 -28.43 3.41 -693.43 -2.36 -30.79 16 17 C -0.23 -11.79 10.27 84.03 0.86 -10.93 16 18 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.07 -3.55 5.48 84.86 0.47 -3.09 16 20 N -0.95 -54.78 10.33 21.65 0.22 -54.55 16 21 Si 0.97 43.57 29.56 68.60 2.03 45.59 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.15 4.98 6.70 86.23 0.58 5.56 16 26 C 0.23 5.39 10.74 85.26 0.92 6.30 16 27 N -0.52 -12.94 10.37 -191.97 -1.99 -14.93 16 28 C 0.31 7.61 7.96 134.18 1.07 8.68 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.24 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.17 3.05 3.93 -2.91 -0.01 3.04 16 34 H 0.12 2.09 8.06 -2.39 -0.02 2.07 16 35 H 0.09 1.97 6.16 -2.38 -0.01 1.96 16 36 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 37 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.07 2.16 8.07 -2.38 -0.02 2.15 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 41 H 0.00 0.22 7.36 -2.39 -0.02 0.21 16 42 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.03 1.08 8.14 -2.38 -0.02 1.07 16 44 H 0.06 1.83 8.00 -2.39 -0.02 1.81 16 45 H 0.19 3.98 7.66 -2.91 -0.02 3.96 16 Total: -1.00 -72.55 371.45 2.39 -70.16 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.03 Total: 9.82 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 8.86 Total: 28.88 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -9.45 Total: -135.28 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -72.55 2.39 -70.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073078699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.097 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds