Wall clock time and date at job start Wed Apr 1 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28816 * 125.94321 * 2 1 4 4 N 1.28641 * 111.79449 * 179.97438 * 3 2 1 5 5 C 1.34752 * 109.29124 * 0.02562 * 4 3 2 6 6 C 1.39910 * 134.59218 * 180.02562 * 5 4 3 7 7 C 1.36166 * 119.97451 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55905 * 359.97438 * 7 6 5 9 9 C 1.47725 * 119.88024 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99774 * 173.20386 * 9 8 7 11 11 N 1.34781 * 119.99823 * 353.20685 * 9 8 7 12 12 C 1.47884 * 134.34041 * 174.60843 * 11 9 8 13 13 C 1.52365 * 85.59200 * 156.49331 * 12 11 9 14 14 C 1.47884 * 134.33973 * 354.57792 * 11 9 8 15 15 C 1.53648 * 116.40104 * 141.34879 * 13 12 11 16 16 C 1.54605 * 102.73868 * 162.91598 * 15 13 12 17 17 N 1.47137 * 107.36074 * 339.24911 * 16 15 13 18 18 C 1.36939 * 125.59022 * 179.07476 * 17 16 15 19 19 H 1.07995 * 120.00187 * 186.06507 * 18 17 16 20 20 C 1.38817 * 119.99722 * 6.06727 * 18 17 16 21 21 N 1.31624 * 119.99750 * 353.10467 * 20 18 17 22 22 Si 1.86795 * 120.00166 * 173.10883 * 20 18 17 23 23 H 1.48499 * 109.47313 * 94.98259 * 22 20 18 24 24 H 1.48500 * 109.46981 * 214.98349 * 22 20 18 25 25 H 1.48505 * 109.46797 * 334.97838 * 22 20 18 26 26 C 1.47730 * 108.82745 * 359.06986 * 17 16 15 27 27 C 1.39165 * 120.23633 * 0.27439 * 8 7 6 28 28 C 1.37367 * 125.94533 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47158 * 90.01747 * 1 2 3 30 30 H 1.09006 * 109.46695 * 210.01850 * 1 2 3 31 31 H 1.08997 * 109.46921 * 330.01421 * 1 2 3 32 32 H 1.07996 * 120.01421 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.71638 * 180.02562 * 7 6 5 34 34 H 1.09002 * 113.85312 * 42.32463 * 12 11 9 35 35 H 1.09006 * 113.85401 * 270.65687 * 12 11 9 36 36 H 1.09001 * 113.85714 * 89.34742 * 14 11 9 37 37 H 1.08995 * 113.86100 * 317.66856 * 14 11 9 38 38 H 1.09006 * 110.76095 * 281.22721 * 15 13 12 39 39 H 1.09001 * 110.76003 * 44.60442 * 15 13 12 40 40 H 1.08996 * 109.86812 * 98.68865 * 16 15 13 41 41 H 1.08999 * 109.86909 * 219.80412 * 16 15 13 42 42 H 0.96997 * 119.99826 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.40238 * 263.66489 * 26 17 16 44 44 H 1.09000 * 110.39747 * 141.24748 * 26 17 16 45 45 H 1.07997 * 120.24066 * 179.72585 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6137 0.0004 6 6 4.6697 -1.5026 0.0012 7 6 4.4455 -2.8457 0.0012 8 6 3.1369 -3.3503 0.0010 9 6 2.9110 -4.8101 0.0005 10 8 1.7849 -5.2509 0.1248 11 7 3.9533 -5.6533 -0.1379 12 6 4.1083 -7.1230 -0.0833 13 6 5.3538 -6.9054 -0.9334 14 6 5.3971 -5.4768 -0.4052 15 6 6.5665 -7.7909 -0.6078 16 6 7.4423 -7.6487 -1.8739 17 7 6.5658 -7.1960 -2.9655 18 6 6.9627 -6.9335 -4.2495 19 1 6.2627 -6.5116 -4.9555 20 6 8.2648 -7.2096 -4.6436 21 7 9.1542 -7.5950 -3.7532 22 14 8.7547 -7.0341 -6.4376 23 1 9.3485 -5.6912 -6.6596 24 1 9.7515 -8.0793 -6.7830 25 1 7.5536 -7.1925 -7.2965 26 6 5.1872 -7.0712 -2.4494 27 6 2.0505 -2.4805 -0.0050 28 6 2.2714 -1.1121 0.0005 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3633 0.8901 0.5136 32 1 5.6810 -1.1238 0.0026 33 1 5.2826 -3.5282 0.0022 34 1 3.3154 -7.6691 -0.5946 35 1 4.3176 -7.5074 0.9150 36 1 6.0007 -5.3577 0.4946 37 1 5.6161 -4.7308 -1.1691 38 1 7.0932 -7.4171 0.2703 39 1 6.2607 -8.8273 -0.4640 40 1 8.2277 -6.9132 -1.7003 41 1 7.8841 -8.6120 -2.1288 42 1 10.0641 -7.7876 -4.0285 43 1 4.6150 -7.9717 -2.6724 44 1 4.6997 -6.1946 -2.8761 45 1 1.0428 -2.8690 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073153387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:10 Heat of formation + Delta-G solvation = 164.830457 kcal Electronic energy + Delta-G solvation = -29230.898773 eV Core-core repulsion = 25253.426764 eV Total energy + Delta-G solvation = -3977.472008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.44403 -40.83089 -38.86060 -37.38947 -35.69292 -35.16694 -32.37937 -31.24107 -31.06828 -29.62268 -28.48262 -28.16222 -26.53243 -26.05878 -24.51245 -23.76169 -23.22237 -21.41794 -20.40425 -20.00699 -18.70866 -18.24894 -17.74330 -17.02325 -16.90563 -16.48426 -16.04944 -15.52004 -15.02411 -14.77717 -14.56393 -14.36952 -14.09696 -13.92264 -13.68837 -13.64253 -13.40326 -12.94109 -12.64483 -12.48986 -12.31815 -12.15013 -11.98634 -11.91374 -11.82779 -11.11438 -11.08222 -11.00089 -10.95966 -10.76273 -10.48384 -10.35576 -10.12862 -9.89760 -9.72756 -9.64312 -9.25598 -8.75637 -8.61162 -8.54038 -6.87970 -5.77002 -3.09309 0.07292 0.91925 1.81621 1.85916 2.71479 2.77288 3.37989 3.44457 3.45852 3.53004 3.63197 4.07924 4.20750 4.34096 4.44775 4.55079 4.58708 4.71366 4.78213 4.83448 4.88323 4.93689 5.02015 5.15425 5.39219 5.44472 5.54052 5.54615 5.66190 5.67788 5.68756 5.72713 5.78563 5.97214 5.98724 6.07447 6.15177 6.16675 6.32585 6.41386 6.45166 6.61764 6.67117 7.49741 7.57241 7.66007 7.77976 8.01936 8.06824 8.20629 9.17523 9.77349 10.42775 11.34998 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002797 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.552950 B =10008.308711 C =11153.698805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.317 5.317 3 N -0.017 5.017 4 N -0.256 5.256 5 C 0.028 3.972 6 C -0.054 4.054 7 C -0.100 4.100 8 C -0.093 4.093 9 C 0.581 3.419 10 O -0.545 6.545 11 N -0.632 5.632 12 C 0.124 3.876 13 C -0.104 4.104 14 C 0.111 3.889 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.604 5.604 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.161 3.839 27 C -0.037 4.037 28 C 0.012 3.988 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.040 0.960 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 9.378 11.991 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.118 5.118 3 N 0.002 4.998 4 N -0.131 5.131 5 C -0.097 4.097 6 C -0.076 4.076 7 C -0.121 4.121 8 C -0.100 4.100 9 C 0.371 3.629 10 O -0.424 6.424 11 N -0.366 5.366 12 C 0.002 3.998 13 C -0.106 4.106 14 C -0.011 4.011 15 C -0.170 4.170 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.035 3.965 27 C -0.060 4.060 28 C -0.107 4.107 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.231 10.805 11.937 21.488 hybrid contribution 0.103 -0.904 -0.949 1.315 sum -14.129 9.901 10.987 20.454 Atomic orbital electron populations 1.22278 0.71949 1.06045 1.05178 1.47114 1.08852 1.02979 1.52819 1.77984 0.96974 1.12324 1.12553 1.75372 1.07480 1.11349 1.18871 1.20116 0.93265 0.91178 1.05185 1.20001 0.97718 0.91027 0.98833 1.21536 0.96919 0.95580 0.98088 1.19732 0.93361 0.93037 1.03879 1.17647 0.83679 0.85062 0.76494 1.90760 1.22150 1.78271 1.51207 1.50046 1.08314 1.08481 1.69731 1.23054 0.96888 0.79998 0.99822 1.22487 0.95246 0.94748 0.98083 1.23288 0.79212 0.98549 1.00013 1.22682 0.95555 0.98338 1.00433 1.21228 0.90796 0.99662 0.83038 1.44552 1.01566 1.79327 1.07662 1.19023 0.95545 1.35611 0.85565 0.90518 1.24795 0.96154 1.01391 0.97813 1.69962 1.03088 1.52106 1.31515 0.86155 0.78053 0.77292 0.84614 1.21655 1.21629 1.20655 1.21044 0.89052 0.98282 0.88086 1.20011 1.00261 0.87616 0.98099 1.19585 0.91063 0.90761 1.09242 0.88990 0.88222 0.87778 0.83598 0.82824 0.89738 0.89407 0.89020 0.88659 0.91629 0.91589 0.93748 0.93510 0.93730 0.95621 0.94225 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.41 59.85 0.68 1.10 16 2 N -0.32 -3.27 3.80 -65.54 -0.25 -3.52 16 3 N -0.02 -0.22 13.07 60.35 0.79 0.57 16 4 N -0.26 -3.62 12.42 32.09 0.40 -3.22 16 5 C 0.03 0.37 7.36 -84.95 -0.63 -0.26 16 6 C -0.05 -0.61 10.03 -39.70 -0.40 -1.00 16 7 C -0.10 -1.13 9.00 -39.57 -0.36 -1.48 16 8 C -0.09 -1.17 5.88 -104.92 -0.62 -1.79 16 9 C 0.58 8.44 7.98 -12.38 -0.10 8.34 16 10 O -0.54 -9.34 17.07 5.31 0.09 -9.25 16 11 N -0.63 -8.50 3.60 -188.11 -0.68 -9.18 16 12 C 0.12 1.58 8.21 -3.61 -0.03 1.56 16 13 C -0.10 -1.53 0.99 -154.85 -0.15 -1.68 16 14 C 0.11 1.41 5.46 -3.60 -0.02 1.39 16 15 C -0.13 -2.04 6.36 -25.55 -0.16 -2.21 16 16 C 0.18 3.88 5.40 -2.85 -0.02 3.87 16 17 N -0.60 -14.30 3.41 -170.49 -0.58 -14.88 16 18 C -0.23 -6.11 10.26 -15.06 -0.15 -6.26 16 19 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 20 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 21 N -0.92 -25.83 10.35 55.49 0.57 -25.26 16 22 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.16 3.07 6.63 -3.16 -0.02 3.05 16 27 C -0.04 -0.43 9.59 -39.10 -0.38 -0.80 16 28 C 0.01 0.14 6.93 -84.24 -0.58 -0.44 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.15 1.55 4.01 -52.48 -0.21 1.34 16 34 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.10 1.28 6.92 -51.93 -0.36 0.92 16 38 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.04 1.07 7.55 -51.93 -0.39 0.68 16 41 H 0.05 1.17 7.36 -51.93 -0.38 0.78 16 42 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 45 H 0.14 1.48 7.65 -52.49 -0.40 1.08 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -33.84 370.23 -8.04 -41.88 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.92 Total: -2.36 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -3.02 Total: 3.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.25 Total: -55.49 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.84 -8.04 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073153387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.711 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds