Wall clock time and date at job start Wed Apr 1 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28816 * 125.94321 * 2 1 4 4 N 1.28641 * 111.79449 * 179.97438 * 3 2 1 5 5 C 1.34752 * 109.29124 * 0.02562 * 4 3 2 6 6 C 1.39910 * 134.59218 * 180.02562 * 5 4 3 7 7 C 1.36166 * 119.97451 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55905 * 359.97438 * 7 6 5 9 9 C 1.47725 * 119.88024 * 179.97438 * 8 7 6 10 10 O 1.21560 * 119.99774 * 173.20386 * 9 8 7 11 11 N 1.34781 * 119.99823 * 353.20685 * 9 8 7 12 12 C 1.47884 * 134.34041 * 174.60843 * 11 9 8 13 13 C 1.52365 * 85.59200 * 156.49331 * 12 11 9 14 14 C 1.47884 * 134.33973 * 354.57792 * 11 9 8 15 15 C 1.53648 * 116.40104 * 141.34879 * 13 12 11 16 16 C 1.54605 * 102.73868 * 162.91598 * 15 13 12 17 17 N 1.47137 * 107.36074 * 339.24911 * 16 15 13 18 18 C 1.36939 * 125.59022 * 179.07476 * 17 16 15 19 19 H 1.07995 * 120.00187 * 186.06507 * 18 17 16 20 20 C 1.38817 * 119.99722 * 6.06727 * 18 17 16 21 21 N 1.31624 * 119.99750 * 353.10467 * 20 18 17 22 22 Si 1.86795 * 120.00166 * 173.10883 * 20 18 17 23 23 H 1.48499 * 109.47313 * 94.98259 * 22 20 18 24 24 H 1.48500 * 109.46981 * 214.98349 * 22 20 18 25 25 H 1.48505 * 109.46797 * 334.97838 * 22 20 18 26 26 C 1.47730 * 108.82745 * 359.06986 * 17 16 15 27 27 C 1.39165 * 120.23633 * 0.27439 * 8 7 6 28 28 C 1.37367 * 125.94533 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47158 * 90.01747 * 1 2 3 30 30 H 1.09006 * 109.46695 * 210.01850 * 1 2 3 31 31 H 1.08997 * 109.46921 * 330.01421 * 1 2 3 32 32 H 1.07996 * 120.01421 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.71638 * 180.02562 * 7 6 5 34 34 H 1.09002 * 113.85312 * 42.32463 * 12 11 9 35 35 H 1.09006 * 113.85401 * 270.65687 * 12 11 9 36 36 H 1.09001 * 113.85714 * 89.34742 * 14 11 9 37 37 H 1.08995 * 113.86100 * 317.66856 * 14 11 9 38 38 H 1.09006 * 110.76095 * 281.22721 * 15 13 12 39 39 H 1.09001 * 110.76003 * 44.60442 * 15 13 12 40 40 H 1.08996 * 109.86812 * 98.68865 * 16 15 13 41 41 H 1.08999 * 109.86909 * 219.80412 * 16 15 13 42 42 H 0.96997 * 119.99826 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.40238 * 263.66489 * 26 17 16 44 44 H 1.09000 * 110.39747 * 141.24748 * 26 17 16 45 45 H 1.07997 * 120.24066 * 179.72585 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2212 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6137 0.0004 6 6 4.6697 -1.5026 0.0012 7 6 4.4455 -2.8457 0.0012 8 6 3.1369 -3.3503 0.0010 9 6 2.9110 -4.8101 0.0005 10 8 1.7849 -5.2509 0.1248 11 7 3.9533 -5.6533 -0.1379 12 6 4.1083 -7.1230 -0.0833 13 6 5.3538 -6.9054 -0.9334 14 6 5.3971 -5.4768 -0.4052 15 6 6.5665 -7.7909 -0.6078 16 6 7.4423 -7.6487 -1.8739 17 7 6.5658 -7.1960 -2.9655 18 6 6.9627 -6.9335 -4.2495 19 1 6.2627 -6.5116 -4.9555 20 6 8.2648 -7.2096 -4.6436 21 7 9.1542 -7.5950 -3.7532 22 14 8.7547 -7.0341 -6.4376 23 1 9.3485 -5.6912 -6.6596 24 1 9.7515 -8.0793 -6.7830 25 1 7.5536 -7.1925 -7.2965 26 6 5.1872 -7.0712 -2.4494 27 6 2.0505 -2.4805 -0.0050 28 6 2.2714 -1.1121 0.0005 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3633 0.8901 0.5136 32 1 5.6810 -1.1238 0.0026 33 1 5.2826 -3.5282 0.0022 34 1 3.3154 -7.6691 -0.5946 35 1 4.3176 -7.5074 0.9150 36 1 6.0007 -5.3577 0.4946 37 1 5.6161 -4.7308 -1.1691 38 1 7.0932 -7.4171 0.2703 39 1 6.2607 -8.8273 -0.4640 40 1 8.2277 -6.9132 -1.7003 41 1 7.8841 -8.6120 -2.1288 42 1 10.0641 -7.7876 -4.0285 43 1 4.6150 -7.9717 -2.6724 44 1 4.6997 -6.1946 -2.8761 45 1 1.0428 -2.8690 -0.0097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073153387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:10 Heat of formation + Delta-G solvation = 142.486228 kcal Electronic energy + Delta-G solvation = -29231.867691 eV Core-core repulsion = 25253.426764 eV Total energy + Delta-G solvation = -3978.440927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.32141 -41.95754 -39.98944 -38.39737 -37.23532 -35.95623 -34.12802 -32.32612 -31.93599 -31.16246 -29.77935 -28.85677 -27.63218 -27.53590 -25.88838 -24.77853 -24.39099 -22.23076 -22.08091 -21.09686 -19.78875 -19.39826 -18.69221 -18.55653 -17.83398 -17.57086 -17.04529 -16.75894 -16.58480 -16.09272 -15.68432 -15.56135 -15.35024 -15.06747 -14.64533 -14.44543 -14.12894 -14.05664 -13.81921 -13.71098 -13.66760 -13.27454 -13.20347 -13.12543 -12.91636 -12.80307 -12.73114 -12.32817 -12.02699 -11.92341 -11.89116 -11.86264 -11.71302 -11.59914 -11.19073 -10.89003 -10.61041 -10.18813 -9.77310 -9.44450 -8.82528 -7.82540 -5.15005 -0.83759 0.03738 0.93029 1.11369 1.48001 1.49064 1.57699 1.70962 1.75892 2.51621 2.58670 2.76843 3.21178 3.34235 3.40929 3.46037 3.53780 3.70246 3.71562 3.88928 3.92576 4.03592 4.19021 4.24004 4.24899 4.38392 4.51113 4.54768 4.56906 4.66276 4.67439 4.79862 4.81146 4.81896 4.90066 5.02703 5.07075 5.11502 5.14724 5.18561 5.28057 5.38166 5.47803 5.51362 5.79625 5.87357 6.26134 6.59151 6.98986 7.11134 7.16649 7.83016 8.46523 9.27549 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002797 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.552950 B =10008.308711 C =11153.698805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.304 5.304 3 N -0.028 5.028 4 N -0.290 5.290 5 C 0.012 3.988 6 C -0.059 4.059 7 C -0.093 4.093 8 C -0.108 4.108 9 C 0.581 3.419 10 O -0.577 6.577 11 N -0.632 5.632 12 C 0.133 3.867 13 C -0.099 4.099 14 C 0.116 3.884 15 C -0.111 4.111 16 C 0.182 3.818 17 N -0.624 5.624 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.968 3.032 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.158 3.842 27 C -0.029 4.029 28 C 0.003 3.997 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.006 0.994 42 H 0.247 0.753 43 H 0.023 0.977 44 H 0.031 0.969 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.878 9.658 13.297 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.105 5.105 3 N -0.009 5.009 4 N -0.164 5.164 5 C -0.115 4.115 6 C -0.081 4.081 7 C -0.114 4.114 8 C -0.114 4.114 9 C 0.372 3.628 10 O -0.459 6.459 11 N -0.365 5.365 12 C 0.011 3.989 13 C -0.100 4.100 14 C -0.005 4.005 15 C -0.150 4.150 16 C 0.057 3.943 17 N -0.351 5.351 18 C -0.369 4.369 19 H 0.092 0.908 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.797 3.203 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.033 3.967 27 C -0.051 4.051 28 C -0.116 4.116 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.521 11.100 13.248 23.230 hybrid contribution 0.383 -0.980 -1.402 1.753 sum -15.138 10.120 11.846 21.724 Atomic orbital electron populations 1.22806 0.68986 1.08059 1.06929 1.47559 1.10391 1.01971 1.50620 1.77897 0.97016 1.13127 1.12847 1.75326 1.08311 1.12114 1.20607 1.20473 0.94432 0.91158 1.05390 1.20210 0.98272 0.90881 0.98689 1.21602 0.96732 0.95651 0.97440 1.19701 0.94234 0.92199 1.05313 1.17843 0.83297 0.85725 0.75946 1.90740 1.23271 1.78893 1.52961 1.50053 1.08465 1.08838 1.69165 1.23137 0.95143 0.79709 1.00912 1.22292 0.96138 0.96429 0.95166 1.23424 0.79194 0.96674 1.01227 1.22524 0.94611 0.99728 0.98099 1.21032 0.91318 0.96438 0.85477 1.44820 1.03810 1.79078 1.07346 1.19328 0.95565 1.34788 0.87192 0.90762 1.25509 0.96410 1.02049 1.01245 1.70158 1.02930 1.53347 1.32814 0.85228 0.77590 0.76881 0.80644 1.21459 1.22077 1.19874 1.21145 0.86636 0.97622 0.91283 1.20096 1.00666 0.87335 0.97030 1.19668 0.91102 0.91162 1.09713 0.87302 0.86271 0.85837 0.81953 0.81637 0.90202 0.85987 0.85335 0.89575 0.88237 0.90182 0.96693 0.97546 0.94406 0.95894 0.95065 0.82705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.41 127.77 1.46 1.98 16 2 N -0.30 -5.83 3.80 -361.27 -1.37 -7.20 16 3 N -0.03 -0.69 13.07 37.02 0.48 -0.20 16 4 N -0.29 -8.11 12.42 -52.39 -0.65 -8.76 16 5 C 0.01 0.30 7.36 39.75 0.29 0.60 16 6 C -0.06 -1.25 10.03 22.19 0.22 -1.03 16 7 C -0.09 -1.94 9.00 22.28 0.20 -1.73 16 8 C -0.11 -2.53 5.88 -20.06 -0.12 -2.65 16 9 C 0.58 15.76 7.98 86.75 0.69 16.46 16 10 O -0.58 -18.92 17.07 -3.90 -0.07 -18.99 16 11 N -0.63 -15.31 3.60 -867.32 -3.13 -18.44 16 12 C 0.13 2.93 8.21 85.90 0.71 3.64 16 13 C -0.10 -2.66 0.99 -52.16 -0.05 -2.71 16 14 C 0.12 2.60 5.46 85.91 0.47 3.07 16 15 C -0.11 -3.17 6.36 31.36 0.20 -2.97 16 16 C 0.18 8.03 5.40 86.80 0.47 8.50 16 17 N -0.62 -29.83 3.41 -693.32 -2.36 -32.20 16 18 C -0.24 -12.98 10.26 84.03 0.86 -12.11 16 19 H 0.07 3.94 7.84 -2.91 -0.02 3.92 16 20 C -0.06 -3.23 5.48 84.86 0.47 -2.77 16 21 N -0.94 -54.47 10.35 21.65 0.22 -54.25 16 22 Si 0.97 44.92 29.56 68.60 2.03 46.95 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.16 5.93 6.63 86.28 0.57 6.50 16 27 C -0.03 -0.62 9.59 22.58 0.22 -0.40 16 28 C 0.00 0.06 6.93 39.02 0.27 0.33 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.17 2.93 4.01 -2.91 -0.01 2.92 16 34 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 35 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.13 2.03 7.92 -2.39 -0.02 2.01 16 37 H 0.09 2.14 6.92 -2.39 -0.02 2.13 16 38 H 0.10 2.23 7.99 -2.38 -0.02 2.21 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.01 0.73 7.55 -2.39 -0.02 0.71 16 41 H 0.01 0.32 7.36 -2.39 -0.02 0.31 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 45 H 0.16 2.92 7.65 -2.91 -0.02 2.90 16 Total: -1.00 -76.19 370.23 3.11 -73.08 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.02 Total: 5.31 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.93 Total: 14.68 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -6.80 Total: -121.04 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.07 Total: -18.99 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.19 3.11 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073153387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.570 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds