Wall clock time and date at job start Wed Apr 1 2020 01:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40247 * 126.66212 * 2 1 4 4 N 1.28657 * 109.42565 * 179.97438 * 3 2 1 5 5 C 1.35407 * 110.10140 * 359.97438 * 4 3 2 6 6 C 1.40121 * 133.02777 * 180.02562 * 5 4 3 7 7 C 1.37595 * 120.15244 * 179.97438 * 6 5 4 8 8 C 1.38491 * 120.80007 * 0.02562 * 7 6 5 9 9 C 1.39211 * 120.27310 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.24413 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99439 * 133.56812 * 10 9 8 12 12 N 1.34773 * 120.00350 * 313.57713 * 10 9 8 13 13 C 1.47394 * 135.85115 * 5.33082 * 12 10 9 14 14 C 1.52073 * 87.40925 * 154.38603 * 13 12 10 15 15 C 1.47388 * 135.85443 * 185.69500 * 12 10 9 16 16 C 1.53509 * 117.20960 * 267.27632 * 14 13 12 17 17 C 1.54626 * 102.70264 * 262.92968 * 16 14 13 18 18 N 1.47144 * 107.37853 * 339.38716 * 17 16 14 19 19 C 1.36941 * 125.58025 * 179.04382 * 18 17 16 20 20 H 1.08005 * 119.99818 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99885 * 0.02562 * 19 18 17 22 22 N 1.31611 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99618 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47211 * 90.00392 * 23 21 19 25 25 H 1.48506 * 109.46916 * 210.00112 * 23 21 19 26 26 H 1.48500 * 109.47643 * 330.00096 * 23 21 19 27 27 C 1.47755 * 108.83873 * 359.08608 * 18 17 16 28 28 C 1.36964 * 126.66505 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46912 * 263.87298 * 1 2 3 30 30 H 1.09004 * 109.47167 * 23.87435 * 1 2 3 31 31 H 1.08998 * 109.47068 * 143.87548 * 1 2 3 32 32 H 1.08005 * 119.92501 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.60354 * 180.02562 * 7 6 5 34 34 H 1.07992 * 119.86166 * 179.97438 * 8 7 6 35 35 H 1.09003 * 113.53973 * 268.99686 * 13 12 10 36 36 H 1.08995 * 113.54628 * 39.67473 * 13 12 10 37 37 H 1.08995 * 113.54322 * 320.32675 * 15 12 10 38 38 H 1.09003 * 113.54209 * 90.93432 * 15 12 10 39 39 H 1.08998 * 110.76613 * 21.23148 * 16 14 13 40 40 H 1.08998 * 110.76275 * 144.62748 * 16 14 13 41 41 H 1.09005 * 109.86652 * 98.83619 * 17 16 14 42 42 H 1.09006 * 109.86772 * 219.93889 * 17 16 14 43 43 H 0.97000 * 119.99781 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.40428 * 263.50329 * 27 18 17 45 45 H 1.09001 * 110.40190 * 141.07842 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1250 0.0000 4 7 3.5312 0.7438 0.0005 5 6 3.5989 -0.6086 0.0015 6 6 4.6697 -1.5123 0.0028 7 6 4.4306 -2.8673 0.0041 8 6 3.1358 -3.3589 0.0036 9 6 2.0530 -2.4840 0.0023 10 6 0.6739 -3.0083 0.0011 11 8 -0.1529 -2.5457 0.7632 12 7 0.3307 -4.0001 -0.8444 13 6 1.0389 -4.8579 -1.8115 14 6 -0.0619 -5.8858 -1.6012 15 6 -0.9170 -4.6947 -1.2090 16 6 0.1743 -6.9576 -0.5280 17 6 0.6937 -8.1572 -1.3540 18 7 0.2696 -7.9478 -2.7474 19 6 0.5482 -8.7800 -3.7987 20 1 0.1908 -8.5377 -4.7886 21 6 1.2898 -9.9351 -3.5919 22 7 1.7249 -10.2306 -2.3854 23 14 1.6703 -11.0699 -5.0260 24 1 2.9502 -10.6585 -5.6567 25 1 1.7870 -12.4664 -4.5347 26 1 0.5763 -10.9870 -6.0268 27 6 -0.5051 -6.6921 -2.8268 28 6 2.2829 -1.0986 0.0005 29 1 -0.3633 -0.1097 1.0218 30 1 -0.3634 0.9398 -0.4159 31 1 -0.3633 -0.8301 -0.6058 32 1 5.6852 -1.1445 0.0037 33 1 5.2626 -3.5560 0.0055 34 1 2.9655 -4.4253 0.0042 35 1 1.0641 -4.4471 -2.8209 36 1 2.0178 -5.1888 -1.4648 37 1 -1.5713 -4.8893 -0.3593 38 1 -1.4403 -4.2375 -2.0489 39 1 0.9262 -6.6277 0.1888 40 1 -0.7579 -7.2109 -0.0231 41 1 1.7816 -8.2005 -1.3005 42 1 0.2651 -9.0836 -0.9717 43 1 2.2428 -11.0379 -2.2409 44 1 -1.5737 -6.9012 -2.7781 45 1 -0.2636 -6.1540 -3.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073497425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:13 Heat of formation + Delta-G solvation = 159.172157 kcal Electronic energy + Delta-G solvation = -29705.836724 eV Core-core repulsion = 25728.119354 eV Total energy + Delta-G solvation = -3977.717371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.37891 -40.84208 -38.70689 -37.49950 -35.80880 -34.72224 -32.39655 -31.41580 -30.56227 -29.52818 -28.76107 -27.65996 -26.17787 -25.99448 -24.55488 -23.76353 -22.89101 -22.02183 -20.39647 -19.58243 -18.51470 -18.23013 -17.46362 -16.88284 -16.66594 -16.37432 -15.95554 -15.77641 -15.58112 -14.87081 -14.60341 -14.50095 -13.93540 -13.81996 -13.68950 -13.40058 -13.01549 -12.74108 -12.63563 -12.44545 -12.38138 -12.18011 -12.05951 -12.01790 -11.83383 -11.35668 -11.08622 -10.99548 -10.89889 -10.76676 -10.55711 -10.32673 -10.18207 -9.98269 -9.82697 -9.70402 -9.18558 -8.81392 -8.67839 -8.52823 -6.92787 -5.79354 -3.13263 0.01618 0.96147 1.75885 1.86485 2.46105 2.71321 3.32782 3.34846 3.40604 3.42206 3.75952 4.10181 4.22136 4.37508 4.43080 4.51776 4.54976 4.82465 4.83307 4.95936 4.99224 5.09684 5.25091 5.29411 5.34580 5.41661 5.45933 5.53566 5.54632 5.58270 5.67759 5.71332 5.76763 5.87499 5.97620 6.03353 6.11948 6.21738 6.34041 6.35431 6.39535 6.54479 6.59716 7.46911 7.51455 7.57285 7.72754 7.73891 7.92199 8.16303 9.13420 9.73311 10.38058 11.32167 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.002763 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.546110 B =10132.816250 C =10942.877222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.385 5.385 3 N -0.010 5.010 4 N -0.218 5.218 5 C -0.026 4.026 6 C -0.013 4.013 7 C -0.138 4.138 8 C -0.029 4.029 9 C -0.128 4.128 10 C 0.586 3.414 11 O -0.542 6.542 12 N -0.634 5.634 13 C 0.117 3.883 14 C -0.105 4.105 15 C 0.120 3.880 16 C -0.117 4.117 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.154 3.846 28 C 0.125 3.875 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 15.786 4.620 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.178 5.178 3 N 0.010 4.990 4 N -0.096 5.096 5 C -0.150 4.150 6 C -0.036 4.036 7 C -0.159 4.159 8 C -0.051 4.051 9 C -0.135 4.135 10 C 0.376 3.624 11 O -0.421 6.421 12 N -0.368 5.368 13 C -0.005 4.005 14 C -0.107 4.107 15 C -0.003 4.003 16 C -0.155 4.155 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.027 3.973 28 C 0.002 3.998 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.605 17.566 5.133 18.311 hybrid contribution -0.007 -1.675 -0.736 1.829 sum 0.598 15.892 4.397 16.500 Atomic orbital electron populations 1.22167 0.71932 1.04298 1.05092 1.50058 1.08266 1.03126 1.56370 1.81630 0.94031 1.07637 1.15675 1.74850 1.11424 1.10210 1.13141 1.19884 0.92893 0.90274 1.11936 1.20633 0.97626 0.91361 0.93958 1.20997 0.97133 0.94802 1.02972 1.21499 0.91242 0.99978 0.92340 1.18756 0.94406 0.89283 1.11096 1.17528 0.86982 0.77779 0.80093 1.90787 1.52216 1.59145 1.40000 1.49772 1.13672 1.34449 1.38867 1.23039 0.98056 0.86948 0.92425 1.22190 0.95498 0.93223 0.99747 1.22839 0.88416 0.89239 0.99765 1.22480 1.00890 0.95933 0.96227 1.21235 0.98346 0.92474 0.82492 1.44533 1.61569 1.21836 1.05148 1.19035 1.28350 1.00654 0.87743 0.90400 1.24787 1.00347 0.98318 0.96818 1.69946 1.41091 1.26573 1.19239 0.86135 0.78182 0.80214 0.81303 1.21576 1.21688 1.20708 1.21133 0.95027 0.87733 0.93409 1.18930 0.91127 0.89017 1.00761 0.89061 0.88982 0.89183 0.83863 0.83522 0.83585 0.89286 0.89798 0.90095 0.89503 0.92099 0.91681 0.93434 0.93743 0.93700 0.95503 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.11 9.77 59.85 0.58 1.70 16 2 N -0.38 -5.08 4.10 -65.28 -0.27 -5.35 16 3 N -0.01 -0.14 13.72 60.35 0.83 0.69 16 4 N -0.22 -3.06 12.40 32.15 0.40 -2.66 16 5 C -0.03 -0.33 7.26 -84.76 -0.62 -0.94 16 6 C -0.01 -0.13 10.09 -39.11 -0.39 -0.52 16 7 C -0.14 -1.18 9.98 -39.72 -0.40 -1.58 16 8 C -0.03 -0.30 8.84 -39.13 -0.35 -0.64 16 9 C -0.13 -1.62 5.65 -104.92 -0.59 -2.21 16 10 C 0.59 8.11 6.55 -12.47 -0.08 8.03 16 11 O -0.54 -8.61 14.73 5.29 0.08 -8.53 16 12 N -0.63 -8.13 3.69 -186.96 -0.69 -8.82 16 13 C 0.12 1.49 7.23 -7.33 -0.05 1.44 16 14 C -0.10 -1.51 1.06 -155.22 -0.16 -1.67 16 15 C 0.12 1.47 8.03 -7.48 -0.06 1.41 16 16 C -0.12 -1.90 6.40 -25.61 -0.16 -2.07 16 17 C 0.18 3.90 5.39 -2.84 -0.02 3.89 16 18 N -0.60 -13.85 3.41 -170.53 -0.58 -14.43 16 19 C -0.23 -5.92 10.28 -15.06 -0.15 -6.08 16 20 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -25.47 10.30 55.49 0.57 -24.90 16 23 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.15 2.70 6.70 -3.22 -0.02 2.68 16 28 C 0.13 1.68 6.81 -83.92 -0.57 1.11 16 29 H 0.09 0.97 7.77 -51.93 -0.40 0.57 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.99 6.22 -51.93 -0.32 0.67 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 33 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.15 1.39 6.45 -52.49 -0.34 1.05 16 35 H 0.09 1.05 8.06 -51.93 -0.42 0.64 16 36 H 0.08 1.04 6.24 -51.93 -0.32 0.72 16 37 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.10 7.49 -51.93 -0.39 0.72 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -31.64 367.42 -8.21 -39.86 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.92 Total: -1.62 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -3.14 Total: 4.27 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.26 Total: -55.47 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.64 -8.21 -39.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073497425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.029 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds