Wall clock time and date at job start Wed Apr 1 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40247 * 126.66212 * 2 1 4 4 N 1.28657 * 109.42565 * 179.97438 * 3 2 1 5 5 C 1.35407 * 110.10140 * 359.97438 * 4 3 2 6 6 C 1.40121 * 133.02777 * 180.02562 * 5 4 3 7 7 C 1.37595 * 120.15244 * 179.97438 * 6 5 4 8 8 C 1.38491 * 120.80007 * 0.02562 * 7 6 5 9 9 C 1.39211 * 120.27310 * 359.97438 * 8 7 6 10 10 C 1.47537 * 120.24413 * 179.97438 * 9 8 7 11 11 O 1.21589 * 119.99439 * 133.56812 * 10 9 8 12 12 N 1.34773 * 120.00350 * 313.57713 * 10 9 8 13 13 C 1.47394 * 135.85115 * 5.33082 * 12 10 9 14 14 C 1.52073 * 87.40925 * 154.38603 * 13 12 10 15 15 C 1.47388 * 135.85443 * 185.69500 * 12 10 9 16 16 C 1.53509 * 117.20960 * 267.27632 * 14 13 12 17 17 C 1.54626 * 102.70264 * 262.92968 * 16 14 13 18 18 N 1.47144 * 107.37853 * 339.38716 * 17 16 14 19 19 C 1.36941 * 125.58025 * 179.04382 * 18 17 16 20 20 H 1.08005 * 119.99818 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99885 * 0.02562 * 19 18 17 22 22 N 1.31611 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99618 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47211 * 90.00392 * 23 21 19 25 25 H 1.48506 * 109.46916 * 210.00112 * 23 21 19 26 26 H 1.48500 * 109.47643 * 330.00096 * 23 21 19 27 27 C 1.47755 * 108.83873 * 359.08608 * 18 17 16 28 28 C 1.36964 * 126.66505 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46912 * 263.87298 * 1 2 3 30 30 H 1.09004 * 109.47167 * 23.87435 * 1 2 3 31 31 H 1.08998 * 109.47068 * 143.87548 * 1 2 3 32 32 H 1.08005 * 119.92501 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.60354 * 180.02562 * 7 6 5 34 34 H 1.07992 * 119.86166 * 179.97438 * 8 7 6 35 35 H 1.09003 * 113.53973 * 268.99686 * 13 12 10 36 36 H 1.08995 * 113.54628 * 39.67473 * 13 12 10 37 37 H 1.08995 * 113.54322 * 320.32675 * 15 12 10 38 38 H 1.09003 * 113.54209 * 90.93432 * 15 12 10 39 39 H 1.08998 * 110.76613 * 21.23148 * 16 14 13 40 40 H 1.08998 * 110.76275 * 144.62748 * 16 14 13 41 41 H 1.09005 * 109.86652 * 98.83619 * 17 16 14 42 42 H 1.09006 * 109.86772 * 219.93889 * 17 16 14 43 43 H 0.97000 * 119.99781 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.40428 * 263.50329 * 27 18 17 45 45 H 1.09001 * 110.40190 * 141.07842 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3024 1.1250 0.0000 4 7 3.5312 0.7438 0.0005 5 6 3.5989 -0.6086 0.0015 6 6 4.6697 -1.5123 0.0028 7 6 4.4306 -2.8673 0.0041 8 6 3.1358 -3.3589 0.0036 9 6 2.0530 -2.4840 0.0023 10 6 0.6739 -3.0083 0.0011 11 8 -0.1529 -2.5457 0.7632 12 7 0.3307 -4.0001 -0.8444 13 6 1.0389 -4.8579 -1.8115 14 6 -0.0619 -5.8858 -1.6012 15 6 -0.9170 -4.6947 -1.2090 16 6 0.1743 -6.9576 -0.5280 17 6 0.6937 -8.1572 -1.3540 18 7 0.2696 -7.9478 -2.7474 19 6 0.5482 -8.7800 -3.7987 20 1 0.1908 -8.5377 -4.7886 21 6 1.2898 -9.9351 -3.5919 22 7 1.7249 -10.2306 -2.3854 23 14 1.6703 -11.0699 -5.0260 24 1 2.9502 -10.6585 -5.6567 25 1 1.7870 -12.4664 -4.5347 26 1 0.5763 -10.9870 -6.0268 27 6 -0.5051 -6.6921 -2.8268 28 6 2.2829 -1.0986 0.0005 29 1 -0.3633 -0.1097 1.0218 30 1 -0.3634 0.9398 -0.4159 31 1 -0.3633 -0.8301 -0.6058 32 1 5.6852 -1.1445 0.0037 33 1 5.2626 -3.5560 0.0055 34 1 2.9655 -4.4253 0.0042 35 1 1.0641 -4.4471 -2.8209 36 1 2.0178 -5.1888 -1.4648 37 1 -1.5713 -4.8893 -0.3593 38 1 -1.4403 -4.2375 -2.0489 39 1 0.9262 -6.6277 0.1888 40 1 -0.7579 -7.2109 -0.0231 41 1 1.7816 -8.2005 -1.3005 42 1 0.2651 -9.0836 -0.9717 43 1 2.2428 -11.0379 -2.2409 44 1 -1.5737 -6.9012 -2.7781 45 1 -0.2636 -6.1540 -3.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073497425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:12 Heat of formation + Delta-G solvation = 138.930072 kcal Electronic energy + Delta-G solvation = -29706.714487 eV Core-core repulsion = 25728.119354 eV Total energy + Delta-G solvation = -3978.595133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.29024 -41.95322 -39.81977 -38.37223 -37.31642 -35.64229 -34.09361 -32.42837 -31.42304 -31.05152 -30.09696 -28.56532 -27.46658 -27.16799 -25.79137 -25.07644 -23.75178 -23.00206 -22.08785 -20.60596 -19.74363 -19.13488 -18.57134 -18.37101 -17.73312 -17.30711 -17.01704 -16.78654 -16.61868 -16.46196 -15.93032 -15.57003 -15.46484 -14.89439 -14.54873 -14.42154 -14.12559 -13.93809 -13.73477 -13.69293 -13.53209 -13.38592 -13.14165 -13.03271 -12.87979 -12.81668 -12.72684 -12.31814 -12.19066 -12.00267 -11.88308 -11.79010 -11.76920 -11.64208 -11.20776 -10.93547 -10.63026 -10.07624 -9.83155 -9.39853 -8.80986 -7.78213 -5.12105 -0.84661 0.10863 0.82759 0.99630 1.46233 1.52052 1.52556 1.60677 1.72678 2.49049 2.55019 2.88240 3.15136 3.32927 3.37873 3.45879 3.58137 3.58933 3.74211 3.84472 4.06116 4.07075 4.17540 4.20134 4.24629 4.37426 4.49099 4.54575 4.56372 4.60843 4.68626 4.72011 4.76729 4.80138 4.88356 4.97490 5.07640 5.12302 5.19015 5.21202 5.23303 5.38970 5.54599 5.57623 5.73715 5.85767 6.26762 6.54189 6.77480 6.89911 7.18061 7.85356 8.48782 9.31907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.002763 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.546110 B =10132.816250 C =10942.877222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.389 5.389 3 N -0.030 5.030 4 N -0.233 5.233 5 C -0.043 4.043 6 C -0.007 4.007 7 C -0.126 4.126 8 C -0.020 4.020 9 C -0.149 4.149 10 C 0.588 3.412 11 O -0.568 6.568 12 N -0.631 5.631 13 C 0.122 3.878 14 C -0.099 4.099 15 C 0.128 3.872 16 C -0.102 4.102 17 C 0.189 3.811 18 N -0.625 5.625 19 C -0.234 4.234 20 H 0.084 0.916 21 C -0.064 4.064 22 N -0.950 5.950 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.300 1.300 26 H -0.271 1.271 27 C 0.151 3.849 28 C 0.107 3.893 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.172 0.828 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.017 0.983 42 H 0.002 0.998 43 H 0.245 0.755 44 H 0.033 0.967 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 16.624 3.898 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.183 5.183 3 N -0.010 5.010 4 N -0.111 5.111 5 C -0.168 4.168 6 C -0.029 4.029 7 C -0.147 4.147 8 C -0.042 4.042 9 C -0.157 4.157 10 C 0.379 3.621 11 O -0.449 6.449 12 N -0.364 5.364 13 C 0.000 4.000 14 C -0.100 4.100 15 C 0.006 3.994 16 C -0.140 4.140 17 C 0.064 3.936 18 N -0.351 5.351 19 C -0.363 4.363 20 H 0.102 0.898 21 C -0.257 4.257 22 N -0.599 5.599 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.227 1.227 26 H -0.196 1.196 27 C 0.026 3.974 28 C -0.016 4.016 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.190 0.810 33 H 0.201 0.799 34 H 0.174 0.826 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.020 0.980 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.106 18.444 4.390 18.991 hybrid contribution -0.178 -1.976 -0.518 2.051 sum 0.928 16.467 3.872 16.942 Atomic orbital electron populations 1.22243 0.70965 1.05315 1.04849 1.50250 1.08911 1.03017 1.56153 1.81557 0.94321 1.08201 1.16927 1.74788 1.11604 1.11142 1.13558 1.20343 0.93748 0.90128 1.12543 1.21064 0.98182 0.91293 0.92381 1.21393 0.97358 0.94926 1.01041 1.21768 0.91506 1.00188 0.90740 1.18750 0.94357 0.89243 1.13305 1.17682 0.87282 0.77560 0.79618 1.90772 1.53102 1.60002 1.41032 1.49695 1.13878 1.34248 1.38602 1.23061 0.97639 0.86047 0.93216 1.21982 0.97471 0.93189 0.97384 1.22857 0.88122 0.87805 1.00657 1.22270 1.01335 0.94207 0.96171 1.20939 0.96356 0.93231 0.83088 1.44811 1.62046 1.23376 1.04904 1.19422 1.27144 1.00886 0.88833 0.89795 1.25530 1.01224 1.00065 0.98903 1.70158 1.42192 1.26663 1.20914 0.85188 0.78130 0.77799 0.78870 1.21307 1.22723 1.19612 1.21295 0.94562 0.86075 0.95461 1.19219 0.91600 0.89429 1.01390 0.89566 0.86702 0.89683 0.81030 0.79948 0.82600 0.87820 0.89342 0.89924 0.87125 0.90627 0.90993 0.96456 0.97982 0.94606 0.94923 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.19 9.77 127.77 1.25 3.44 16 2 N -0.39 -10.14 4.10 -360.43 -1.48 -11.62 16 3 N -0.03 -0.85 13.72 37.02 0.51 -0.34 16 4 N -0.23 -6.43 12.40 -52.19 -0.65 -7.07 16 5 C -0.04 -1.04 7.26 39.58 0.29 -0.75 16 6 C -0.01 -0.12 10.09 22.58 0.23 0.11 16 7 C -0.13 -1.71 9.98 22.18 0.22 -1.49 16 8 C -0.02 -0.36 8.84 22.56 0.20 -0.16 16 9 C -0.15 -3.52 5.65 -20.06 -0.11 -3.63 16 10 C 0.59 15.30 6.55 86.70 0.57 15.87 16 11 O -0.57 -17.48 14.73 -3.99 -0.06 -17.54 16 12 N -0.63 -14.61 3.69 -863.69 -3.19 -17.79 16 13 C 0.12 2.75 7.23 83.76 0.61 3.36 16 14 C -0.10 -2.61 1.06 -52.62 -0.06 -2.66 16 15 C 0.13 2.76 8.03 83.67 0.67 3.43 16 16 C -0.10 -3.18 6.40 31.32 0.20 -2.98 16 17 C 0.19 8.35 5.39 86.81 0.47 8.82 16 18 N -0.62 -28.45 3.41 -693.45 -2.36 -30.81 16 19 C -0.23 -12.00 10.28 84.03 0.86 -11.14 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 21 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 22 N -0.95 -53.99 10.30 21.65 0.22 -53.77 16 23 Si 0.97 43.38 29.55 68.60 2.03 45.40 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 C 0.15 5.02 6.70 86.22 0.58 5.59 16 28 C 0.11 2.78 6.81 39.41 0.27 3.05 16 29 H 0.09 1.84 7.77 -2.39 -0.02 1.82 16 30 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 1.83 6.22 -2.39 -0.01 1.81 16 32 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 34 H 0.16 2.47 6.45 -2.91 -0.02 2.46 16 35 H 0.10 2.10 8.06 -2.39 -0.02 2.08 16 36 H 0.09 1.94 6.24 -2.39 -0.01 1.93 16 37 H 0.08 1.82 8.13 -2.39 -0.02 1.80 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.02 0.86 7.38 -2.38 -0.02 0.84 16 42 H 0.00 0.10 7.49 -2.38 -0.02 0.08 16 43 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.72 8.00 -2.39 -0.02 1.70 16 Total: -1.00 -70.76 367.42 2.75 -68.01 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.70 Total: 17.88 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -6.94 Total: -121.41 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.06 Total: -17.54 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -70.76 2.75 -68.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073497425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.939 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds