Wall clock time and date at job start Wed Apr 1 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40227 * 126.65522 * 2 1 4 4 N 1.28641 * 109.51063 * 179.97438 * 3 2 1 5 5 C 1.35424 * 110.12777 * 359.97438 * 4 3 2 6 6 C 1.39802 * 133.04324 * 180.02562 * 5 4 3 7 7 C 1.38881 * 119.56140 * 179.97438 * 6 5 4 8 8 C 1.47713 * 119.86272 * 179.97438 * 7 6 5 9 9 O 1.21574 * 120.00126 * 326.62538 * 8 7 6 10 10 N 1.34779 * 120.00054 * 146.89704 * 8 7 6 11 11 C 1.47405 * 125.58698 * 3.24229 * 10 8 7 12 12 C 1.54850 * 104.81017 * 204.60953 * 11 10 8 13 13 C 1.55126 * 101.77691 * 322.81312 * 12 11 10 14 14 H 1.08995 * 113.46001 * 158.33784 * 13 12 11 15 15 C 1.54045 * 108.25933 * 285.18580 * 13 12 11 16 16 N 1.46701 * 106.82703 * 135.80642 * 15 13 12 17 17 C 1.36940 * 125.32154 * 161.80402 * 16 15 13 18 18 H 1.07997 * 119.99804 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00143 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46982 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47341 * 119.99732 * 21 19 17 24 24 H 1.48500 * 109.47297 * 240.00123 * 21 19 17 25 25 C 1.46635 * 109.35793 * 341.81744 * 16 15 13 26 26 C 1.46727 * 125.59447 * 182.93463 * 10 8 7 27 27 H 1.09003 * 111.32658 * 56.12355 * 26 10 8 28 28 C 1.40260 * 120.27103 * 0.26233 * 7 6 5 29 29 C 1.36268 * 120.45229 * 359.47376 * 28 7 6 30 30 C 1.37259 * 126.65967 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47328 * 270.02772 * 1 2 3 32 32 H 1.09002 * 109.47052 * 30.03854 * 1 2 3 33 33 H 1.09007 * 109.46631 * 150.02946 * 1 2 3 34 34 H 1.07998 * 120.21618 * 0.02562 * 6 5 4 35 35 H 1.09008 * 110.36945 * 323.44117 * 11 10 8 36 36 H 1.08995 * 110.36879 * 85.76865 * 11 10 8 37 37 H 1.09002 * 110.96840 * 80.93947 * 12 11 10 38 38 H 1.09002 * 110.96452 * 204.65714 * 12 11 10 39 39 H 1.08992 * 109.99126 * 255.14979 * 15 13 12 40 40 H 1.09000 * 109.98732 * 16.46359 * 15 13 12 41 41 H 0.97003 * 119.99902 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.75361 * 120.92578 * 25 16 15 43 43 H 1.09000 * 109.76044 * 241.62892 * 25 16 15 44 44 H 1.07997 * 119.77239 * 179.72179 * 28 7 6 45 45 H 1.07994 * 119.92296 * 180.24070 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7458 0.0005 5 6 3.6019 -0.6067 0.0015 6 6 4.6719 -1.5064 0.0028 7 6 4.4188 -2.8720 0.0041 8 6 5.5444 -3.8286 0.0049 9 8 6.5769 -3.5528 -0.5746 10 7 5.4247 -5.0094 0.6435 11 6 4.2102 -5.4997 1.3198 12 6 4.7253 -6.5057 2.3783 13 6 5.9009 -7.1827 1.6260 14 1 6.6300 -7.6480 2.2893 15 6 5.3125 -8.1536 0.5848 16 7 6.0696 -7.9556 -0.6561 17 6 6.1165 -8.8359 -1.7039 18 1 5.5664 -9.7640 -1.6545 19 6 6.8719 -8.5359 -2.8292 20 7 7.5427 -7.4050 -2.8892 21 14 6.9365 -9.7370 -4.2583 22 1 6.1022 -10.9249 -3.9446 23 1 6.4181 -9.0771 -5.4835 24 1 8.3408 -10.1644 -4.4827 25 6 6.7685 -6.6678 -0.5988 26 6 6.4800 -6.0205 0.7741 27 1 7.3759 -5.6015 1.2324 28 6 3.0990 -3.3464 -0.0015 29 6 2.0516 -2.4747 0.0026 30 6 2.2845 -1.1011 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3633 -0.8903 -0.5134 34 1 5.6885 -1.1419 0.0037 35 1 3.6861 -4.6752 1.8033 36 1 3.5552 -6.0007 0.6071 37 1 5.0792 -5.9873 3.2694 38 1 3.9542 -7.2329 2.6329 39 1 5.4239 -9.1816 0.9292 40 1 4.2591 -7.9281 0.4186 41 1 8.0702 -7.1951 -3.6757 42 1 7.8421 -6.8264 -0.7015 43 1 6.4135 -6.0198 -1.4001 44 1 2.9114 -4.4100 -0.0050 45 1 1.0388 -2.8494 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075950618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:16 Heat of formation + Delta-G solvation = 131.548792 kcal Electronic energy + Delta-G solvation = -29825.191747 eV Core-core repulsion = 25846.276537 eV Total energy + Delta-G solvation = -3978.915210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29886 -40.36738 -38.33639 -36.96283 -34.98537 -34.83494 -32.31408 -30.97816 -30.86441 -30.64994 -28.68368 -27.84709 -26.46200 -24.91827 -24.40134 -23.61870 -22.26741 -21.44001 -20.81055 -19.83802 -19.09286 -18.12989 -17.49099 -16.79090 -16.47580 -16.31569 -15.87409 -15.47497 -14.81419 -14.52966 -14.45089 -14.23116 -13.91745 -13.80461 -13.58156 -13.42916 -13.15625 -12.84009 -12.62887 -12.45962 -12.28367 -12.13877 -11.96215 -11.81663 -11.55395 -11.09622 -11.03549 -10.97353 -10.93418 -10.73050 -10.47487 -10.26712 -10.12863 -9.84877 -9.70022 -9.56126 -9.09696 -8.58569 -8.57755 -8.19007 -6.79799 -5.65906 -3.02322 0.23435 0.77445 1.78122 1.95581 2.89081 3.17589 3.41748 3.46236 3.49850 3.59939 3.85963 4.06226 4.30737 4.47363 4.51244 4.64086 4.65827 4.73709 4.83766 4.90948 4.93275 5.02748 5.08817 5.26482 5.46439 5.48878 5.54639 5.61040 5.69370 5.71500 5.73377 5.83521 5.89803 5.99482 6.04331 6.16403 6.19158 6.29873 6.35507 6.46365 6.54925 6.62300 6.84761 7.56790 7.67213 7.73207 7.88164 7.94156 8.31080 8.49873 9.25346 9.86331 10.49420 11.43693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002970 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.680040 B = 9424.428102 C = 9962.926120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.401 5.401 3 N -0.012 5.012 4 N -0.208 5.208 5 C -0.026 4.026 6 C 0.026 3.974 7 C -0.132 4.132 8 C 0.573 3.427 9 O -0.519 6.519 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.125 4.125 13 C -0.111 4.111 14 H 0.098 0.902 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.177 3.823 26 C 0.114 3.886 27 H 0.082 0.918 28 C -0.043 4.043 29 C -0.130 4.130 30 C 0.102 3.898 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.151 0.849 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.853 9.932 12.249 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.195 5.195 3 N 0.008 4.992 4 N -0.088 5.088 5 C -0.150 4.150 6 C 0.003 3.997 7 C -0.139 4.139 8 C 0.360 3.640 9 O -0.395 6.395 10 N -0.330 5.330 11 C -0.028 4.028 12 C -0.164 4.164 13 C -0.130 4.130 14 H 0.116 0.884 15 C 0.016 3.984 16 N -0.329 5.329 17 C -0.362 4.362 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.052 3.948 26 C 0.011 3.989 27 H 0.100 0.900 28 C -0.065 4.065 29 C -0.152 4.152 30 C -0.020 4.020 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.169 0.831 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.224 11.708 11.672 22.474 hybrid contribution -0.341 -1.610 -0.877 1.864 sum -15.565 10.098 10.795 21.466 Atomic orbital electron populations 1.22002 0.72812 1.05269 1.04063 1.50074 1.07814 1.03524 1.58101 1.81612 0.94075 1.07615 1.15944 1.74852 1.11168 1.10502 1.12234 1.19747 0.93074 0.90080 1.12051 1.20492 0.98333 0.89775 0.91108 1.19744 0.93932 0.93235 1.06958 1.17558 0.86951 0.80390 0.79057 1.90862 1.29868 1.76340 1.42392 1.48244 1.14089 1.16778 1.53886 1.22599 0.88423 0.97114 0.94696 1.22784 0.98483 0.97907 0.97192 1.23164 0.97100 0.95991 0.96780 0.88426 1.21295 0.94355 0.96048 0.86670 1.44215 1.54890 1.19193 1.14627 1.19029 1.25267 0.98574 0.93351 0.90405 1.24847 0.99607 0.97465 0.98379 1.69999 1.34201 1.22785 1.29022 0.86078 0.77323 0.79982 0.82536 1.20556 1.21794 1.21738 1.21407 0.97235 0.86150 0.90044 1.22867 0.89539 0.86880 0.99621 0.90015 1.21357 0.90731 1.01004 0.93358 1.19688 1.00448 0.87894 1.07168 1.19477 0.90877 0.90570 1.01067 0.89970 0.88500 0.88918 0.83201 0.90700 0.90802 0.90963 0.89869 0.94738 0.96509 0.93657 0.93029 0.92565 0.83150 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.52 59.85 0.69 1.17 16 2 N -0.40 -4.11 4.11 -65.43 -0.27 -4.37 16 3 N -0.01 -0.16 13.72 60.35 0.83 0.67 16 4 N -0.21 -3.04 12.40 32.15 0.40 -2.64 16 5 C -0.03 -0.36 7.26 -84.76 -0.62 -0.97 16 6 C 0.03 0.37 9.65 -38.76 -0.37 -0.01 16 7 C -0.13 -1.88 5.56 -105.03 -0.58 -2.47 16 8 C 0.57 10.29 7.17 -12.39 -0.09 10.20 16 9 O -0.52 -11.58 16.59 5.30 0.09 -11.50 16 10 N -0.60 -9.90 2.98 -162.96 -0.49 -10.39 16 11 C 0.09 1.15 4.62 -2.57 -0.01 1.14 16 12 C -0.13 -1.40 6.34 -24.63 -0.16 -1.56 16 13 C -0.11 -1.71 4.28 -87.73 -0.38 -2.08 16 14 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 15 C 0.14 2.71 6.46 -3.39 -0.02 2.69 16 16 N -0.60 -15.05 3.38 -171.39 -0.58 -15.63 16 17 C -0.23 -6.46 10.25 -15.06 -0.15 -6.62 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.91 -27.60 10.24 55.49 0.57 -27.03 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.18 4.39 4.91 -3.18 -0.02 4.37 16 26 C 0.11 2.14 3.67 -65.80 -0.24 1.90 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 C -0.04 -0.48 7.81 -39.53 -0.31 -0.79 16 29 C -0.13 -1.22 9.97 -39.89 -0.40 -1.62 16 30 C 0.10 1.17 6.93 -84.10 -0.58 0.58 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.15 2.09 7.96 -52.49 -0.42 1.68 16 35 H 0.07 0.72 6.48 -51.92 -0.34 0.38 16 36 H 0.07 0.91 6.29 -51.93 -0.33 0.59 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.02 0.31 6.59 -51.93 -0.34 -0.03 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.05 1.45 7.33 -51.93 -0.38 1.07 16 43 H 0.06 1.62 6.70 -51.93 -0.35 1.27 16 44 H 0.15 1.51 5.15 -52.49 -0.27 1.24 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -36.23 361.93 -8.12 -44.35 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.77 Total: -1.83 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -3.33 Total: 5.67 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.46 Total: -59.40 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.23 -8.12 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075950618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.901 kcal (2) G-P(sol) polarization free energy of solvation -36.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds