Wall clock time and date at job start Wed Apr 1 2020 01:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40227 * 126.65522 * 2 1 4 4 N 1.28641 * 109.51063 * 179.97438 * 3 2 1 5 5 C 1.35424 * 110.12777 * 359.97438 * 4 3 2 6 6 C 1.39802 * 133.04324 * 180.02562 * 5 4 3 7 7 C 1.38881 * 119.56140 * 179.97438 * 6 5 4 8 8 C 1.47713 * 119.86272 * 179.97438 * 7 6 5 9 9 O 1.21574 * 120.00126 * 326.62538 * 8 7 6 10 10 N 1.34779 * 120.00054 * 146.89704 * 8 7 6 11 11 C 1.47405 * 125.58698 * 3.24229 * 10 8 7 12 12 C 1.54850 * 104.81017 * 204.60953 * 11 10 8 13 13 C 1.55126 * 101.77691 * 322.81312 * 12 11 10 14 14 H 1.08995 * 113.46001 * 158.33784 * 13 12 11 15 15 C 1.54045 * 108.25933 * 285.18580 * 13 12 11 16 16 N 1.46701 * 106.82703 * 135.80642 * 15 13 12 17 17 C 1.36940 * 125.32154 * 161.80402 * 16 15 13 18 18 H 1.07997 * 119.99804 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00071 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00143 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46982 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47341 * 119.99732 * 21 19 17 24 24 H 1.48500 * 109.47297 * 240.00123 * 21 19 17 25 25 C 1.46635 * 109.35793 * 341.81744 * 16 15 13 26 26 C 1.46727 * 125.59447 * 182.93463 * 10 8 7 27 27 H 1.09003 * 111.32658 * 56.12355 * 26 10 8 28 28 C 1.40260 * 120.27103 * 0.26233 * 7 6 5 29 29 C 1.36268 * 120.45229 * 359.47376 * 28 7 6 30 30 C 1.37259 * 126.65967 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47328 * 270.02772 * 1 2 3 32 32 H 1.09002 * 109.47052 * 30.03854 * 1 2 3 33 33 H 1.09007 * 109.46631 * 150.02946 * 1 2 3 34 34 H 1.07998 * 120.21618 * 0.02562 * 6 5 4 35 35 H 1.09008 * 110.36945 * 323.44117 * 11 10 8 36 36 H 1.08995 * 110.36879 * 85.76865 * 11 10 8 37 37 H 1.09002 * 110.96840 * 80.93947 * 12 11 10 38 38 H 1.09002 * 110.96452 * 204.65714 * 12 11 10 39 39 H 1.08992 * 109.99126 * 255.14979 * 15 13 12 40 40 H 1.09000 * 109.98732 * 16.46359 * 15 13 12 41 41 H 0.97003 * 119.99902 * 180.02562 * 20 19 17 42 42 H 1.09007 * 109.75361 * 120.92578 * 25 16 15 43 43 H 1.09000 * 109.76044 * 241.62892 * 25 16 15 44 44 H 1.07997 * 119.77239 * 179.72179 * 28 7 6 45 45 H 1.07994 * 119.92296 * 180.24070 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1250 0.0000 4 7 3.5314 0.7458 0.0005 5 6 3.6019 -0.6067 0.0015 6 6 4.6719 -1.5064 0.0028 7 6 4.4188 -2.8720 0.0041 8 6 5.5444 -3.8286 0.0049 9 8 6.5769 -3.5528 -0.5746 10 7 5.4247 -5.0094 0.6435 11 6 4.2102 -5.4997 1.3198 12 6 4.7253 -6.5057 2.3783 13 6 5.9009 -7.1827 1.6260 14 1 6.6300 -7.6480 2.2893 15 6 5.3125 -8.1536 0.5848 16 7 6.0696 -7.9556 -0.6561 17 6 6.1165 -8.8359 -1.7039 18 1 5.5664 -9.7640 -1.6545 19 6 6.8719 -8.5359 -2.8292 20 7 7.5427 -7.4050 -2.8892 21 14 6.9365 -9.7370 -4.2583 22 1 6.1022 -10.9249 -3.9446 23 1 6.4181 -9.0771 -5.4835 24 1 8.3408 -10.1644 -4.4827 25 6 6.7685 -6.6678 -0.5988 26 6 6.4800 -6.0205 0.7741 27 1 7.3759 -5.6015 1.2324 28 6 3.0990 -3.3464 -0.0015 29 6 2.0516 -2.4747 0.0026 30 6 2.2845 -1.1011 0.0005 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3633 -0.8903 -0.5134 34 1 5.6885 -1.1419 0.0037 35 1 3.6861 -4.6752 1.8033 36 1 3.5552 -6.0007 0.6071 37 1 5.0792 -5.9873 3.2694 38 1 3.9542 -7.2329 2.6329 39 1 5.4239 -9.1816 0.9292 40 1 4.2591 -7.9281 0.4186 41 1 8.0702 -7.1951 -3.6757 42 1 7.8421 -6.8264 -0.7015 43 1 6.4135 -6.0198 -1.4001 44 1 2.9114 -4.4100 -0.0050 45 1 1.0388 -2.8494 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075950618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:15 Heat of formation + Delta-G solvation = 105.213292 kcal Electronic energy + Delta-G solvation = -29826.333740 eV Core-core repulsion = 25846.276537 eV Total energy + Delta-G solvation = -3980.057203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21761 -41.69635 -39.64921 -38.14033 -36.54012 -35.76353 -34.00170 -32.43925 -31.86806 -31.75747 -30.24563 -28.50667 -27.93501 -26.67223 -25.60188 -24.63969 -23.37225 -22.55583 -22.23424 -21.10361 -20.42307 -19.31927 -18.71864 -18.32380 -17.71591 -17.19487 -17.02870 -16.73191 -16.58378 -15.74593 -15.58933 -15.56556 -15.27046 -14.83180 -14.65729 -14.40991 -14.11621 -14.00419 -13.90343 -13.80748 -13.53646 -13.38434 -13.13610 -12.93018 -12.87926 -12.81925 -12.75101 -12.35224 -12.04805 -11.91619 -11.82974 -11.76498 -11.72396 -11.52164 -11.35806 -11.02520 -10.71300 -10.05375 -9.69022 -9.38927 -8.86452 -7.81287 -5.19559 -0.69912 -0.21645 1.03509 1.07492 1.44179 1.45894 1.56381 1.67643 1.92007 2.49812 2.52322 2.93039 3.29053 3.35805 3.42810 3.47887 3.61623 3.65542 3.83173 3.88903 3.95255 4.04335 4.23552 4.29801 4.40207 4.43410 4.51063 4.57164 4.61238 4.67956 4.74114 4.77368 4.82666 4.90555 4.97212 5.01613 5.12085 5.15239 5.23620 5.31279 5.36263 5.46239 5.48861 5.59369 5.67291 5.83642 6.21680 6.56481 6.79874 7.09565 7.14064 7.82352 8.43860 9.26932 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002970 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.680040 B = 9424.428102 C = 9962.926120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.383 5.383 3 N -0.026 5.026 4 N -0.246 5.246 5 C -0.045 4.045 6 C 0.009 3.991 7 C -0.135 4.135 8 C 0.564 3.436 9 O -0.583 6.583 10 N -0.595 5.595 11 C 0.085 3.915 12 C -0.107 4.107 13 C -0.098 4.098 14 H 0.114 0.886 15 C 0.135 3.865 16 N -0.623 5.623 17 C -0.235 4.235 18 H 0.092 0.908 19 C -0.074 4.074 20 N -0.953 5.953 21 Si 0.978 3.022 22 H -0.256 1.256 23 H -0.298 1.298 24 H -0.296 1.296 25 C 0.195 3.805 26 C 0.117 3.883 27 H 0.075 0.925 28 C -0.047 4.047 29 C -0.097 4.097 30 C 0.100 3.900 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.241 0.759 42 H -0.003 1.003 43 H 0.003 0.997 44 H 0.169 0.831 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 8.434 14.689 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.178 5.178 3 N -0.006 5.006 4 N -0.124 5.124 5 C -0.169 4.169 6 C -0.014 4.014 7 C -0.142 4.142 8 C 0.354 3.646 9 O -0.464 6.464 10 N -0.327 5.327 11 C -0.036 4.036 12 C -0.145 4.145 13 C -0.118 4.118 14 H 0.132 0.868 15 C 0.011 3.989 16 N -0.350 5.350 17 C -0.364 4.364 18 H 0.109 0.891 19 C -0.267 4.267 20 N -0.602 5.602 21 Si 0.806 3.194 22 H -0.180 1.180 23 H -0.225 1.225 24 H -0.224 1.224 25 C 0.069 3.931 26 C 0.012 3.988 27 H 0.093 0.907 28 C -0.069 4.069 29 C -0.118 4.118 30 C -0.023 4.023 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.015 0.985 43 H 0.021 0.979 44 H 0.186 0.814 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.458 10.188 14.184 26.899 hybrid contribution 1.134 -1.120 -1.615 2.269 sum -19.324 9.068 12.569 24.771 Atomic orbital electron populations 1.22597 0.69363 1.07359 1.06248 1.50503 1.09444 1.02274 1.55626 1.81510 0.94100 1.08958 1.16064 1.74837 1.12184 1.11274 1.14096 1.19859 0.94269 0.90016 1.12759 1.20338 0.98033 0.90267 0.92772 1.19475 0.94143 0.92077 1.08479 1.18271 0.87183 0.81175 0.78012 1.90821 1.32639 1.77773 1.45127 1.48305 1.15191 1.15724 1.53447 1.23009 0.86724 0.98812 0.95035 1.22840 0.97040 0.97790 0.96827 1.23151 0.99040 0.93509 0.96067 0.86755 1.21620 0.94690 0.97646 0.84973 1.44519 1.55472 1.18711 1.16274 1.19524 1.23921 0.99091 0.93887 0.89075 1.25755 1.00167 0.99227 1.01503 1.70307 1.35681 1.25135 1.29116 0.85014 0.77051 0.78480 0.78835 1.18001 1.22510 1.22376 1.20915 0.93880 0.86060 0.92250 1.22565 0.91049 0.88580 0.96590 0.90695 1.21471 0.89299 1.02191 0.93935 1.20117 1.02149 0.86186 1.03395 1.19739 0.89964 0.91751 1.00859 0.87621 0.87413 0.85971 0.85091 0.87038 0.90316 0.88583 0.86338 0.93711 0.94349 0.94980 0.98516 0.97884 0.81381 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 11.52 127.77 1.47 1.88 16 2 N -0.38 -6.69 4.11 -360.92 -1.48 -8.17 16 3 N -0.03 -0.66 13.72 37.02 0.51 -0.15 16 4 N -0.25 -7.33 12.40 -52.21 -0.65 -7.98 16 5 C -0.04 -1.24 7.26 39.57 0.29 -0.95 16 6 C 0.01 0.27 9.65 22.80 0.22 0.49 16 7 C -0.14 -3.88 5.56 -20.13 -0.11 -3.99 16 8 C 0.56 21.31 7.17 86.75 0.62 21.93 16 9 O -0.58 -28.76 16.59 -3.95 -0.07 -28.83 16 10 N -0.60 -19.65 2.98 -787.74 -2.35 -22.00 16 11 C 0.08 1.73 4.62 86.84 0.40 2.13 16 12 C -0.11 -1.83 6.34 31.95 0.20 -1.63 16 13 C -0.10 -2.77 4.28 -8.92 -0.04 -2.81 16 14 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 15 C 0.14 4.82 6.46 86.69 0.56 5.38 16 16 N -0.62 -31.63 3.38 -696.17 -2.35 -33.98 16 17 C -0.24 -13.14 10.25 84.03 0.86 -12.28 16 18 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 19 C -0.07 -4.36 5.48 84.86 0.47 -3.89 16 20 N -0.95 -61.64 10.24 21.65 0.22 -61.42 16 21 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 C 0.20 10.33 4.91 86.86 0.43 10.76 16 26 C 0.12 4.48 3.67 46.25 0.17 4.65 16 27 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 28 C -0.05 -0.91 7.81 22.30 0.17 -0.74 16 29 C -0.10 -1.37 9.97 22.07 0.22 -1.15 16 30 C 0.10 2.01 6.93 39.16 0.27 2.28 16 31 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 34 H 0.13 4.21 7.96 -2.91 -0.02 4.19 16 35 H 0.11 1.54 6.48 -2.38 -0.02 1.52 16 36 H 0.08 1.58 6.29 -2.39 -0.02 1.56 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.34 8.07 -2.39 -0.02 1.32 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.24 6.59 -2.39 -0.02 1.23 16 41 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.00 -0.21 7.33 -2.38 -0.02 -0.23 16 43 H 0.00 0.19 6.70 -2.39 -0.02 0.17 16 44 H 0.17 2.65 5.15 -2.91 -0.02 2.64 16 45 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -91.02 361.93 3.09 -87.92 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.03 Total: 3.42 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.20 Total: 22.07 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -6.10 Total: -133.71 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.07 Total: -28.83 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -91.02 3.09 -87.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075950618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.137 kcal (2) G-P(sol) polarization free energy of solvation -91.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds