Wall clock time and date at job start Wed Apr 1 2020 01:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39803 * 125.33736 * 2 1 4 4 C 1.30199 * 110.13013 * 180.02562 * 3 2 1 5 5 C 1.45973 * 107.58940 * 0.02562 * 4 3 2 6 6 C 1.39651 * 134.12381 * 180.02562 * 5 4 3 7 7 C 1.39510 * 117.95159 * 179.97438 * 6 5 4 8 8 C 1.47687 * 120.41093 * 179.97438 * 7 6 5 9 9 O 1.21575 * 119.99758 * 333.63722 * 8 7 6 10 10 N 1.34770 * 119.99996 * 153.35538 * 8 7 6 11 11 C 1.47401 * 125.59079 * 2.97079 * 10 8 7 12 12 C 1.54850 * 104.81211 * 204.60666 * 11 10 8 13 13 C 1.55115 * 101.78189 * 322.81729 * 12 11 10 14 14 H 1.08997 * 113.46394 * 159.23924 * 13 12 11 15 15 C 1.54045 * 108.25837 * 286.09100 * 13 12 11 16 16 N 1.46710 * 106.82585 * 135.80378 * 15 13 12 17 17 C 1.36937 * 125.31600 * 161.79716 * 16 15 13 18 18 H 1.08003 * 120.00554 * 4.96102 * 17 16 15 19 19 C 1.38821 * 119.99702 * 184.95739 * 17 16 15 20 20 N 1.31620 * 119.99971 * 352.63718 * 19 17 16 21 21 Si 1.86797 * 119.99981 * 172.63836 * 19 17 16 22 22 H 1.48499 * 109.47133 * 94.98378 * 21 19 17 23 23 H 1.48502 * 109.47298 * 214.98507 * 21 19 17 24 24 H 1.48499 * 109.47266 * 334.98517 * 21 19 17 25 25 C 1.46625 * 109.35771 * 341.82176 * 16 15 13 26 26 C 1.46731 * 125.58902 * 182.66686 * 10 8 7 27 27 H 1.08999 * 111.33292 * 56.12895 * 26 10 8 28 28 C 1.40185 * 119.17921 * 0.25238 * 7 6 5 29 29 N 1.31189 * 121.37334 * 359.48073 * 28 7 6 30 30 C 1.32932 * 121.84558 * 0.51133 * 29 28 7 31 31 H 1.08999 * 109.46669 * 89.97589 * 1 2 3 32 32 H 1.08997 * 109.46865 * 209.97332 * 1 2 3 33 33 H 1.08999 * 109.47508 * 329.97867 * 1 2 3 34 34 H 1.07997 * 126.20678 * 179.97438 * 4 3 2 35 35 H 1.08007 * 121.02611 * 359.96999 * 6 5 4 36 36 H 1.09001 * 110.37061 * 323.44924 * 11 10 8 37 37 H 1.09004 * 110.36940 * 85.77455 * 11 10 8 38 38 H 1.09005 * 110.96472 * 80.94476 * 12 11 10 39 39 H 1.09005 * 110.96688 * 204.69196 * 12 11 10 40 40 H 1.09001 * 109.98647 * 255.14301 * 15 13 12 41 41 H 1.08997 * 109.98947 * 16.46209 * 15 13 12 42 42 H 0.97000 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.75960 * 120.93081 * 25 16 15 44 44 H 1.09003 * 109.75553 * 241.62536 * 25 16 15 45 45 H 1.08006 * 119.30991 * 179.72694 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1405 0.0000 4 6 3.5301 0.7989 -0.0005 5 6 3.5907 -0.6595 -0.0016 6 6 4.6327 -1.5893 -0.0020 7 6 4.3002 -2.9442 -0.0025 8 6 5.3590 -3.9738 -0.0036 9 8 6.4522 -3.7210 -0.4716 10 7 5.1150 -5.1917 0.5194 11 6 3.8243 -5.6478 1.0659 12 6 4.1925 -6.7725 2.0647 13 6 5.3735 -7.4674 1.3378 14 1 6.0103 -8.0500 2.0034 15 6 4.8032 -8.2858 0.1639 16 7 5.6715 -8.0330 -0.9914 17 6 5.7400 -8.8118 -2.1156 18 1 5.0657 -9.6469 -2.2361 19 6 6.6760 -8.5279 -3.1007 20 7 7.3981 -7.4300 -3.0255 21 14 6.9107 -9.7039 -4.5329 22 1 6.0867 -9.2535 -5.6833 23 1 8.3422 -9.7243 -4.9273 24 1 6.4896 -11.0688 -4.1268 25 6 6.4548 -6.8166 -0.7537 26 6 6.0891 -6.2832 0.6324 27 1 6.9742 -5.9692 1.1855 28 6 2.9486 -3.3162 -0.0079 29 7 1.9929 -2.4176 -0.0023 30 6 2.2554 -1.1144 -0.0014 31 1 -0.3632 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 4.3742 1.4725 -0.0011 35 1 5.6643 -1.2693 -0.0021 36 1 3.3212 -4.8307 1.5830 37 1 3.1922 -6.0399 0.2691 38 1 4.5129 -6.3563 3.0199 39 1 3.3588 -7.4613 2.2011 40 1 4.8116 -9.3474 0.4110 41 1 3.7861 -7.9621 -0.0567 42 1 8.0525 -7.2318 -3.7136 43 1 7.5189 -7.0501 -0.7920 44 1 6.2143 -6.0697 -1.5103 45 1 2.6888 -4.3645 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076405627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:25 Heat of formation + Delta-G solvation = 126.882667 kcal Electronic energy + Delta-G solvation = -29853.338811 eV Core-core repulsion = 25874.221263 eV Total energy + Delta-G solvation = -3979.117548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81694 -40.35597 -38.48618 -37.39203 -34.86710 -34.06245 -32.37753 -31.78732 -30.91067 -30.57390 -28.70115 -27.18034 -26.40925 -24.93298 -24.10778 -23.95118 -22.26521 -21.16319 -20.80159 -19.80902 -18.95939 -17.98438 -17.79144 -16.73324 -16.34576 -16.12006 -16.02930 -15.39723 -14.88546 -14.49213 -14.31024 -14.25912 -14.04323 -13.71658 -13.59171 -13.38735 -13.16693 -12.87343 -12.76093 -12.57782 -12.40110 -12.16507 -11.90023 -11.58677 -11.38591 -11.08273 -10.96978 -10.71961 -10.68179 -10.46353 -10.24628 -10.15018 -9.99021 -9.87190 -9.69345 -9.36351 -9.25681 -8.53294 -8.52615 -8.20216 -6.78212 -5.66103 -3.00742 0.54622 0.75809 1.85942 2.16933 3.00033 3.20790 3.42844 3.47950 3.50565 3.70530 3.88509 4.02641 4.35661 4.48046 4.53128 4.65183 4.75304 4.76568 4.93249 4.95371 5.08593 5.10786 5.18735 5.19935 5.37859 5.47522 5.49916 5.52847 5.70832 5.73253 5.84059 5.86834 5.94609 6.00370 6.16792 6.18638 6.32753 6.46354 6.50618 6.55536 6.63834 6.85633 7.12994 7.58383 7.63105 7.66886 7.88310 7.94209 8.32133 8.50181 9.26147 9.87585 10.51013 11.44065 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002973 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.235243 B = 9414.825986 C = 9954.128108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.396 5.396 3 N -0.244 5.244 4 C 0.096 3.904 5 C -0.238 4.238 6 C 0.066 3.934 7 C -0.217 4.217 8 C 0.580 3.420 9 O -0.523 6.523 10 N -0.597 5.597 11 C 0.089 3.911 12 C -0.124 4.124 13 C -0.110 4.110 14 H 0.100 0.900 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.912 5.912 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.174 3.826 26 C 0.118 3.882 27 H 0.080 0.920 28 C 0.192 3.808 29 N -0.506 5.506 30 C 0.325 3.675 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.205 0.795 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.035 0.965 41 H 0.018 0.982 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.591 12.796 12.538 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 N -0.056 5.056 4 C -0.103 4.103 5 C -0.248 4.248 6 C 0.038 3.962 7 C -0.224 4.224 8 C 0.368 3.632 9 O -0.399 6.399 10 N -0.331 5.331 11 C -0.034 4.034 12 C -0.162 4.162 13 C -0.130 4.130 14 H 0.118 0.882 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.559 5.559 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.048 3.952 26 C 0.015 3.985 27 H 0.098 0.902 28 C 0.022 3.978 29 N -0.221 5.221 30 C 0.086 3.914 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.221 0.779 35 H 0.171 0.829 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.795 13.824 12.050 22.361 hybrid contribution 1.356 -0.983 -0.940 1.921 sum -11.439 12.841 11.110 20.473 Atomic orbital electron populations 1.21825 0.73311 1.04417 1.03369 1.48075 1.06339 1.00040 1.64149 1.76708 1.02735 1.07454 1.18655 1.25121 0.94854 0.92578 0.97734 1.20435 0.94055 0.94729 1.15607 1.21123 0.99233 0.89886 0.86003 1.20704 0.95189 0.94487 1.12046 1.17352 0.87004 0.80550 0.78297 1.90841 1.24490 1.79525 1.45059 1.48245 1.12522 1.12150 1.60140 1.22694 0.86879 0.97138 0.96684 1.22772 0.98920 0.96941 0.97581 1.23163 0.96534 0.96095 0.97202 0.88232 1.21316 0.93654 0.96764 0.86781 1.44226 1.45862 1.27280 1.15535 1.18982 1.14667 1.07750 0.94910 0.90466 1.24854 0.98698 0.97703 0.98913 1.70007 1.26832 1.23962 1.35063 0.86166 0.77220 0.80393 0.82361 1.21746 1.21635 1.20653 1.21158 0.96003 0.88431 0.89582 1.22526 0.90839 0.85099 1.00076 0.90203 1.23607 0.86978 0.99096 0.88075 1.66770 1.37318 0.98377 1.19589 1.19164 0.88648 0.88264 0.95329 0.91040 0.89077 0.89435 0.77851 0.82933 0.90645 0.90490 0.90901 0.89747 0.94642 0.96484 0.93657 0.92785 0.92722 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.87 11.43 59.85 0.68 1.56 16 2 N -0.40 -4.63 4.03 -67.17 -0.27 -4.90 16 3 N -0.24 -2.77 12.39 31.87 0.39 -2.38 16 4 C 0.10 0.95 12.30 -15.15 -0.19 0.77 16 5 C -0.24 -2.95 6.36 -105.20 -0.67 -3.62 16 6 C 0.07 0.86 9.76 -38.58 -0.38 0.49 16 7 C -0.22 -3.19 5.70 -104.83 -0.60 -3.79 16 8 C 0.58 10.45 7.24 -12.40 -0.09 10.36 16 9 O -0.52 -11.47 16.45 5.30 0.09 -11.38 16 10 N -0.60 -10.04 2.99 -163.88 -0.49 -10.53 16 11 C 0.09 1.13 4.54 -2.57 -0.01 1.12 16 12 C -0.12 -1.42 6.35 -24.64 -0.16 -1.58 16 13 C -0.11 -1.71 4.35 -87.73 -0.38 -2.10 16 14 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.14 2.72 6.45 -3.38 -0.02 2.69 16 16 N -0.60 -15.16 3.38 -172.35 -0.58 -15.74 16 17 C -0.23 -6.54 10.24 -15.06 -0.15 -6.69 16 18 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 19 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 20 N -0.91 -27.60 10.29 55.49 0.57 -27.03 16 21 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.17 4.31 4.90 -4.00 -0.02 4.29 16 26 C 0.12 2.21 3.56 -66.61 -0.24 1.98 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 C 0.19 2.57 9.09 -17.10 -0.16 2.42 16 29 N -0.51 -6.88 10.37 -12.03 -0.12 -7.01 16 30 C 0.33 4.33 7.96 -156.10 -1.24 3.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.20 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.15 1.77 7.93 -52.48 -0.42 1.35 16 36 H 0.08 0.79 6.16 -51.93 -0.32 0.47 16 37 H 0.08 1.01 6.32 -51.93 -0.33 0.68 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.32 6.52 -51.93 -0.34 -0.01 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.05 1.52 7.26 -51.93 -0.38 1.14 16 44 H 0.05 1.58 6.67 -51.93 -0.35 1.23 16 45 H 0.18 2.17 4.54 -52.48 -0.24 1.93 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -36.17 361.17 -9.42 -45.59 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.71 Total: -0.16 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -3.71 Total: 10.75 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.50 Total: -67.58 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.17 -9.42 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076405627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.474 kcal (2) G-P(sol) polarization free energy of solvation -36.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds