Wall clock time and date at job start Wed Apr 1 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39803 * 125.33736 * 2 1 4 4 C 1.30199 * 110.13013 * 180.02562 * 3 2 1 5 5 C 1.45973 * 107.58940 * 0.02562 * 4 3 2 6 6 C 1.39651 * 134.12381 * 180.02562 * 5 4 3 7 7 C 1.39510 * 117.95159 * 179.97438 * 6 5 4 8 8 C 1.47687 * 120.41093 * 179.97438 * 7 6 5 9 9 O 1.21575 * 119.99758 * 333.63722 * 8 7 6 10 10 N 1.34770 * 119.99996 * 153.35538 * 8 7 6 11 11 C 1.47401 * 125.59079 * 2.97079 * 10 8 7 12 12 C 1.54850 * 104.81211 * 204.60666 * 11 10 8 13 13 C 1.55115 * 101.78189 * 322.81729 * 12 11 10 14 14 H 1.08997 * 113.46394 * 159.23924 * 13 12 11 15 15 C 1.54045 * 108.25837 * 286.09100 * 13 12 11 16 16 N 1.46710 * 106.82585 * 135.80378 * 15 13 12 17 17 C 1.36937 * 125.31600 * 161.79716 * 16 15 13 18 18 H 1.08003 * 120.00554 * 4.96102 * 17 16 15 19 19 C 1.38821 * 119.99702 * 184.95739 * 17 16 15 20 20 N 1.31620 * 119.99971 * 352.63718 * 19 17 16 21 21 Si 1.86797 * 119.99981 * 172.63836 * 19 17 16 22 22 H 1.48499 * 109.47133 * 94.98378 * 21 19 17 23 23 H 1.48502 * 109.47298 * 214.98507 * 21 19 17 24 24 H 1.48499 * 109.47266 * 334.98517 * 21 19 17 25 25 C 1.46625 * 109.35771 * 341.82176 * 16 15 13 26 26 C 1.46731 * 125.58902 * 182.66686 * 10 8 7 27 27 H 1.08999 * 111.33292 * 56.12895 * 26 10 8 28 28 C 1.40185 * 119.17921 * 0.25238 * 7 6 5 29 29 N 1.31189 * 121.37334 * 359.48073 * 28 7 6 30 30 C 1.32932 * 121.84558 * 0.51133 * 29 28 7 31 31 H 1.08999 * 109.46669 * 89.97589 * 1 2 3 32 32 H 1.08997 * 109.46865 * 209.97332 * 1 2 3 33 33 H 1.08999 * 109.47508 * 329.97867 * 1 2 3 34 34 H 1.07997 * 126.20678 * 179.97438 * 4 3 2 35 35 H 1.08007 * 121.02611 * 359.96999 * 6 5 4 36 36 H 1.09001 * 110.37061 * 323.44924 * 11 10 8 37 37 H 1.09004 * 110.36940 * 85.77455 * 11 10 8 38 38 H 1.09005 * 110.96472 * 80.94476 * 12 11 10 39 39 H 1.09005 * 110.96688 * 204.69196 * 12 11 10 40 40 H 1.09001 * 109.98647 * 255.14301 * 15 13 12 41 41 H 1.08997 * 109.98947 * 16.46209 * 15 13 12 42 42 H 0.97000 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.75960 * 120.93081 * 25 16 15 44 44 H 1.09003 * 109.75553 * 241.62536 * 25 16 15 45 45 H 1.08006 * 119.30991 * 179.72694 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1405 0.0000 4 6 3.5301 0.7989 -0.0005 5 6 3.5907 -0.6595 -0.0016 6 6 4.6327 -1.5893 -0.0020 7 6 4.3002 -2.9442 -0.0025 8 6 5.3590 -3.9738 -0.0036 9 8 6.4522 -3.7210 -0.4716 10 7 5.1150 -5.1917 0.5194 11 6 3.8243 -5.6478 1.0659 12 6 4.1925 -6.7725 2.0647 13 6 5.3735 -7.4674 1.3378 14 1 6.0103 -8.0500 2.0034 15 6 4.8032 -8.2858 0.1639 16 7 5.6715 -8.0330 -0.9914 17 6 5.7400 -8.8118 -2.1156 18 1 5.0657 -9.6469 -2.2361 19 6 6.6760 -8.5279 -3.1007 20 7 7.3981 -7.4300 -3.0255 21 14 6.9107 -9.7039 -4.5329 22 1 6.0867 -9.2535 -5.6833 23 1 8.3422 -9.7243 -4.9273 24 1 6.4896 -11.0688 -4.1268 25 6 6.4548 -6.8166 -0.7537 26 6 6.0891 -6.2832 0.6324 27 1 6.9742 -5.9692 1.1855 28 6 2.9486 -3.3162 -0.0079 29 7 1.9929 -2.4176 -0.0023 30 6 2.2554 -1.1144 -0.0014 31 1 -0.3632 0.0004 -1.0277 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3634 0.8898 0.5141 34 1 4.3742 1.4725 -0.0011 35 1 5.6643 -1.2693 -0.0021 36 1 3.3212 -4.8307 1.5830 37 1 3.1922 -6.0399 0.2691 38 1 4.5129 -6.3563 3.0199 39 1 3.3588 -7.4613 2.2011 40 1 4.8116 -9.3474 0.4110 41 1 3.7861 -7.9621 -0.0567 42 1 8.0525 -7.2318 -3.7136 43 1 7.5189 -7.0501 -0.7920 44 1 6.2143 -6.0697 -1.5103 45 1 2.6888 -4.3645 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076405627.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:24 Heat of formation + Delta-G solvation = 102.017902 kcal Electronic energy + Delta-G solvation = -29854.417028 eV Core-core repulsion = 25874.221263 eV Total energy + Delta-G solvation = -3980.195765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.76685 -41.67442 -39.70893 -38.66270 -36.57007 -34.93516 -34.05685 -32.80396 -32.45053 -31.73599 -30.25585 -28.21260 -27.69916 -26.68252 -25.21590 -25.11197 -23.41636 -22.51509 -22.01642 -21.11231 -20.35182 -19.17173 -18.81383 -18.60307 -17.62269 -17.20835 -16.92874 -16.80193 -16.45614 -15.82596 -15.70662 -15.54142 -15.19264 -14.96253 -14.68347 -14.48416 -14.38541 -14.14375 -13.96847 -13.83223 -13.45763 -13.42247 -13.32244 -12.97391 -12.89707 -12.77450 -12.38798 -12.24710 -12.12313 -11.83543 -11.78062 -11.65187 -11.55167 -11.38686 -11.23732 -10.69108 -10.57647 -10.20586 -9.70481 -9.39586 -8.86031 -7.82912 -5.19297 -0.40827 -0.31302 1.04470 1.32459 1.43868 1.45949 1.55671 1.73700 1.93492 2.49808 2.60299 2.98602 3.15311 3.32545 3.36992 3.48477 3.58221 3.64050 3.69265 3.84454 3.94896 4.05216 4.22752 4.25309 4.37078 4.38578 4.42610 4.50493 4.53240 4.58618 4.65556 4.74077 4.83577 4.89931 4.96416 5.06454 5.13494 5.21571 5.29232 5.31793 5.44730 5.49786 5.63333 5.66906 5.82639 6.21867 6.25330 6.54531 6.65272 7.09586 7.13834 7.82121 8.43837 9.25912 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002973 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.235243 B = 9414.825986 C = 9954.128108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.399 5.399 3 N -0.258 5.258 4 C 0.110 3.890 5 C -0.248 4.248 6 C 0.073 3.927 7 C -0.235 4.235 8 C 0.575 3.425 9 O -0.578 6.578 10 N -0.597 5.597 11 C 0.081 3.919 12 C -0.105 4.105 13 C -0.096 4.096 14 H 0.120 0.880 15 C 0.133 3.867 16 N -0.624 5.624 17 C -0.240 4.240 18 H 0.088 0.912 19 C -0.071 4.071 20 N -0.950 5.950 21 Si 0.976 3.024 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.261 1.261 25 C 0.192 3.808 26 C 0.121 3.879 27 H 0.078 0.922 28 C 0.197 3.803 29 N -0.511 5.511 30 C 0.310 3.690 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.245 0.755 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.242 0.758 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.301 12.903 14.683 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.189 5.189 3 N -0.069 5.069 4 C -0.088 4.088 5 C -0.258 4.258 6 C 0.044 3.956 7 C -0.242 4.242 8 C 0.365 3.635 9 O -0.459 6.459 10 N -0.329 5.329 11 C -0.040 4.040 12 C -0.143 4.143 13 C -0.116 4.116 14 H 0.138 0.862 15 C 0.008 3.992 16 N -0.350 5.350 17 C -0.369 4.369 18 H 0.106 0.894 19 C -0.264 4.264 20 N -0.599 5.599 21 Si 0.804 3.196 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.186 1.186 25 C 0.066 3.934 26 C 0.016 3.984 27 H 0.096 0.904 28 C 0.027 3.973 29 N -0.226 5.226 30 C 0.070 3.930 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.261 0.739 35 H 0.178 0.822 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.022 0.978 44 H 0.019 0.981 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.605 13.915 14.250 25.302 hybrid contribution 2.121 -0.948 -1.615 2.829 sum -13.484 12.967 12.635 22.575 Atomic orbital electron populations 1.22108 0.71473 1.05741 1.04299 1.48458 1.07522 0.99527 1.63370 1.76725 1.03272 1.07508 1.19408 1.25790 0.95518 0.91813 0.95700 1.20648 0.93489 0.95978 1.15729 1.21244 0.99982 0.89536 0.84811 1.20457 0.94772 0.94182 1.14806 1.17914 0.87017 0.81373 0.77219 1.90802 1.26933 1.80663 1.47487 1.48295 1.13718 1.11244 1.59655 1.23018 0.84957 0.98838 0.97221 1.22822 0.97801 0.96187 0.97493 1.23156 0.97990 0.94079 0.96331 0.86198 1.21626 0.93374 0.98122 0.86035 1.44541 1.46697 1.27090 1.16690 1.19462 1.14040 1.07721 0.95658 0.89386 1.25745 0.99135 0.99339 1.02134 1.70298 1.27752 1.26075 1.35757 0.85097 0.76406 0.79111 0.78948 1.21765 1.22453 1.18564 1.20686 0.93357 0.87415 0.91935 1.22250 0.92378 0.87115 0.96609 0.90367 1.23701 0.86264 0.99686 0.87628 1.66814 1.37053 0.98646 1.20058 1.19491 0.89626 0.88613 0.95300 0.90283 0.88432 0.87501 0.73916 0.82163 0.87655 0.90693 0.88213 0.86527 0.93634 0.94891 0.94846 0.97842 0.98087 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 11.43 127.77 1.46 2.86 16 2 N -0.40 -8.56 4.03 -366.43 -1.48 -10.04 16 3 N -0.26 -5.29 12.39 -53.08 -0.66 -5.94 16 4 C 0.11 1.93 12.30 86.94 1.07 3.00 16 5 C -0.25 -5.81 6.36 -20.24 -0.13 -5.94 16 6 C 0.07 1.88 9.76 22.92 0.22 2.10 16 7 C -0.23 -6.91 5.70 -20.00 -0.11 -7.03 16 8 C 0.57 21.47 7.24 86.74 0.63 22.10 16 9 O -0.58 -27.20 16.45 -3.95 -0.07 -27.27 16 10 N -0.60 -20.07 2.99 -790.67 -2.36 -22.44 16 11 C 0.08 1.84 4.54 86.84 0.39 2.23 16 12 C -0.11 -1.93 6.35 31.95 0.20 -1.73 16 13 C -0.10 -2.76 4.35 -8.92 -0.04 -2.79 16 14 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 15 C 0.13 4.89 6.45 86.69 0.56 5.45 16 16 N -0.62 -32.07 3.38 -699.19 -2.36 -34.43 16 17 C -0.24 -13.60 10.24 84.04 0.86 -12.74 16 18 H 0.09 4.68 7.84 -2.91 -0.02 4.65 16 19 C -0.07 -4.19 5.47 84.86 0.46 -3.72 16 20 N -0.95 -61.21 10.29 21.65 0.22 -60.99 16 21 Si 0.98 47.36 29.56 68.60 2.03 49.38 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.19 10.14 4.90 86.34 0.42 10.56 16 26 C 0.12 4.62 3.56 45.72 0.16 4.78 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 C 0.20 5.07 9.09 85.26 0.77 5.85 16 29 N -0.51 -13.15 10.37 -191.96 -1.99 -15.14 16 30 C 0.31 7.77 7.96 134.18 1.07 8.84 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.16 3.76 7.93 -2.91 -0.02 3.74 16 36 H 0.11 1.83 6.16 -2.39 -0.01 1.81 16 37 H 0.08 1.77 6.32 -2.39 -0.02 1.75 16 38 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.12 1.53 8.08 -2.38 -0.02 1.51 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.03 1.14 6.52 -2.39 -0.02 1.12 16 42 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.00 0.21 7.26 -2.38 -0.02 0.19 16 44 H 0.00 0.06 6.67 -2.39 -0.02 0.04 16 45 H 0.19 4.32 4.54 -2.91 -0.01 4.31 16 Total: -1.00 -85.98 361.17 2.38 -83.60 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.03 Total: 9.44 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: 8.01 Total: 33.82 kcal Atomic # 7 Polarization: -140.35 SS G_CDS: -8.63 Total: -148.98 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.07 Total: -27.27 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -85.98 2.38 -83.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076405627.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.619 kcal (2) G-P(sol) polarization free energy of solvation -85.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds