Wall clock time and date at job start Wed Apr 1 2020 01:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28817 * 125.94359 * 2 1 4 4 N 1.28642 * 111.79371 * 180.02562 * 3 2 1 5 5 C 1.34745 * 109.29374 * 0.02562 * 4 3 2 6 6 C 1.39911 * 134.59730 * 180.02562 * 5 4 3 7 7 C 1.36155 * 119.98023 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55870 * 0.02562 * 7 6 5 9 9 C 1.47722 * 119.88303 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00047 * 213.13289 * 9 8 7 11 11 N 1.34780 * 119.99668 * 33.13577 * 9 8 7 12 12 C 1.47344 * 125.52369 * 356.51273 * 11 9 8 13 13 C 1.54950 * 104.90163 * 156.77807 * 12 11 9 14 14 C 1.54794 * 101.45357 * 37.25481 * 13 12 11 15 15 H 1.08996 * 112.84232 * 86.23642 * 14 13 12 16 16 C 1.53518 * 109.68636 * 212.92469 * 14 13 12 17 17 N 1.46652 * 107.05027 * 84.83136 * 16 14 13 18 18 C 1.36933 * 125.28388 * 197.40311 * 17 16 14 19 19 H 1.07996 * 120.00523 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99521 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47072 * 89.99997 * 22 20 18 24 24 H 1.48502 * 109.47143 * 209.99912 * 22 20 18 25 25 H 1.48500 * 109.47001 * 330.00285 * 22 20 18 26 26 C 1.46494 * 109.42261 * 17.38007 * 17 16 14 27 27 C 1.48614 * 125.39991 * 177.25499 * 11 9 8 28 28 H 1.08997 * 113.54683 * 56.36651 * 27 11 9 29 29 C 1.39169 * 120.23817 * 0.25254 * 8 7 6 30 30 C 1.37362 * 125.94418 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47573 * 89.97344 * 1 2 3 32 32 H 1.09004 * 109.46944 * 209.97368 * 1 2 3 33 33 H 1.09000 * 109.47073 * 329.97245 * 1 2 3 34 34 H 1.07999 * 120.00800 * 359.95767 * 6 5 4 35 35 H 1.08000 * 119.72357 * 179.97438 * 7 6 5 36 36 H 1.08997 * 110.35453 * 37.92457 * 12 11 9 37 37 H 1.09000 * 110.35433 * 275.63363 * 12 11 9 38 38 H 1.09004 * 111.02843 * 279.21496 * 13 12 11 39 39 H 1.08995 * 111.03207 * 155.29685 * 13 12 11 40 40 H 1.08996 * 109.91905 * 325.47796 * 16 14 13 41 41 H 1.08997 * 109.91483 * 204.18408 * 16 14 13 42 42 H 0.97002 * 119.99572 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.71126 * 117.76526 * 26 17 16 44 44 H 1.08998 * 109.71213 * 238.36297 * 26 17 16 45 45 H 1.08000 * 120.24634 * 179.74792 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6696 -1.5027 -0.0019 7 6 4.4455 -2.8456 -0.0024 8 6 3.1368 -3.3502 -0.0031 9 6 2.9109 -4.8101 -0.0042 10 8 1.9468 -5.2755 -0.5802 11 7 3.7737 -5.6259 0.6334 12 6 5.0148 -5.2027 1.3053 13 6 5.3064 -6.3166 2.3422 14 6 4.8664 -7.5816 1.5663 15 1 5.6575 -7.9881 0.9362 16 6 4.2950 -8.6164 2.5458 17 7 2.8818 -8.2814 2.7493 18 6 2.1033 -8.7305 3.7823 19 1 2.5238 -9.3868 4.5298 20 6 0.7733 -8.3422 3.8687 21 7 0.2606 -7.5428 2.9574 22 14 -0.2891 -8.9554 5.2775 23 1 -0.1965 -8.0070 6.4164 24 1 -1.7009 -9.0519 4.8272 25 1 0.1857 -10.2947 5.7089 26 6 2.4328 -7.3913 1.6759 27 6 3.6326 -7.1001 0.7578 28 1 3.5466 -7.6117 -0.2008 29 6 2.0504 -2.4805 -0.0085 30 6 2.2712 -1.1121 -0.0005 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 5.6809 -1.1238 -0.0022 35 1 5.2825 -3.5282 -0.0032 36 1 4.8670 -4.2466 1.8075 37 1 5.8303 -5.1318 0.5856 38 1 4.7057 -6.1807 3.2416 39 1 6.3682 -6.3564 2.5853 40 1 4.8293 -8.5645 3.4944 41 1 4.3822 -9.6168 2.1218 42 1 -0.6687 -7.2712 3.0180 43 1 1.6410 -7.8752 1.1041 44 1 2.0615 -6.4594 2.1023 45 1 1.0426 -2.8689 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076507178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:19 Heat of formation + Delta-G solvation = 134.785515 kcal Electronic energy + Delta-G solvation = -29954.454847 eV Core-core repulsion = 25975.679992 eV Total energy + Delta-G solvation = -3978.774855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.33849 -40.33061 -38.45588 -37.13567 -35.05096 -34.98959 -32.40539 -31.03579 -30.86445 -30.63281 -28.65551 -28.12250 -26.86974 -24.91927 -24.24615 -23.80483 -22.43857 -21.30306 -20.67600 -19.87677 -19.07812 -18.34549 -17.66482 -16.91010 -16.88663 -16.06532 -15.92938 -15.58190 -14.79905 -14.58319 -14.50170 -14.18877 -14.05124 -13.78353 -13.49705 -13.37567 -13.15008 -12.84379 -12.62800 -12.28224 -12.26521 -12.12228 -11.95045 -11.67866 -11.46275 -11.17495 -11.01418 -10.97520 -10.89524 -10.79936 -10.51749 -10.23852 -10.07757 -9.89968 -9.73443 -9.64927 -9.10558 -8.60944 -8.54553 -8.25052 -6.82866 -5.69661 -3.05833 0.24379 1.01180 1.93876 2.02183 2.93228 3.11648 3.38867 3.43975 3.46244 3.62890 3.77570 4.21505 4.41098 4.45554 4.48858 4.69856 4.74902 4.82645 4.89021 4.91443 5.00860 5.12713 5.14030 5.27227 5.41833 5.49229 5.52774 5.65687 5.68609 5.78070 5.83453 5.89001 5.96889 6.02943 6.07670 6.16049 6.25701 6.34122 6.37372 6.52910 6.56409 6.59526 6.82913 7.54298 7.60804 7.85440 7.88319 8.11546 8.27894 8.42519 9.22023 9.82957 10.45463 11.39901 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.003403 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.079560 B = 8224.859045 C = 9660.793918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.020 5.020 4 N -0.260 5.260 5 C 0.023 3.977 6 C -0.058 4.058 7 C -0.098 4.098 8 C -0.086 4.086 9 C 0.571 3.429 10 O -0.522 6.522 11 N -0.599 5.599 12 C 0.096 3.904 13 C -0.122 4.122 14 C -0.112 4.112 15 H 0.089 0.911 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.179 3.821 27 C 0.116 3.884 28 H 0.086 0.914 29 C -0.038 4.038 30 C 0.017 3.983 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.017 0.983 42 H 0.252 0.748 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 11.964 -6.573 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.116 5.116 3 N -0.001 5.001 4 N -0.134 5.134 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.119 4.119 8 C -0.093 4.093 9 C 0.359 3.641 10 O -0.399 6.399 11 N -0.333 5.333 12 C -0.027 4.027 13 C -0.159 4.159 14 C -0.132 4.132 15 H 0.107 0.893 16 C 0.018 3.982 17 N -0.329 5.329 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.053 3.947 27 C 0.013 3.987 28 H 0.104 0.896 29 C -0.061 4.061 30 C -0.102 4.102 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.811 13.335 -6.851 16.905 hybrid contribution -0.933 -1.313 0.743 1.774 sum 6.878 12.022 -6.107 15.137 Atomic orbital electron populations 1.22306 0.71834 1.06267 1.05165 1.47106 1.08913 1.02974 1.52577 1.77960 0.96938 1.12387 1.12806 1.75327 1.07607 1.11344 1.19123 1.20065 0.93250 0.91171 1.05779 1.19894 0.97429 0.90968 0.99698 1.21261 0.96520 0.95245 0.98917 1.19795 0.93302 0.93507 1.02710 1.17615 0.82304 0.84969 0.79237 1.90838 1.28715 1.76479 1.43819 1.48754 1.22883 1.08106 1.53561 1.22588 0.86236 0.99103 0.94767 1.22780 1.01421 0.93324 0.98416 1.22959 0.96518 0.96549 0.97167 0.89324 1.21080 0.86982 0.94508 0.95656 1.44133 1.05287 1.55712 1.27777 1.19008 0.91512 1.24238 1.01334 0.90354 1.24833 0.97031 0.99758 0.98621 1.70007 1.13624 1.37951 1.34644 0.86148 0.79990 0.78276 0.81505 1.21671 1.21682 1.20649 1.21263 0.90417 0.95480 0.87492 1.23147 0.98137 0.77898 0.99477 0.89594 1.20042 1.00377 0.87629 0.98017 1.19598 0.91006 0.90751 1.08842 0.88989 0.87983 0.87786 0.83914 0.83396 0.90384 0.91408 0.89478 0.90325 0.94282 0.96502 0.93746 0.93666 0.92582 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.40 59.84 0.68 1.26 16 2 N -0.32 -3.69 3.80 -65.54 -0.25 -3.94 16 3 N -0.02 -0.27 13.07 60.35 0.79 0.52 16 4 N -0.26 -3.75 12.42 32.09 0.40 -3.35 16 5 C 0.02 0.31 7.36 -84.95 -0.63 -0.31 16 6 C -0.06 -0.63 10.03 -39.70 -0.40 -1.03 16 7 C -0.10 -1.09 7.82 -39.57 -0.31 -1.40 16 8 C -0.09 -1.22 5.58 -104.92 -0.59 -1.81 16 9 C 0.57 10.07 7.26 -12.38 -0.09 9.98 16 10 O -0.52 -11.27 16.91 5.30 0.09 -11.18 16 11 N -0.60 -9.86 2.85 -161.99 -0.46 -10.32 16 12 C 0.10 1.16 5.06 -2.55 -0.01 1.15 16 13 C -0.12 -1.61 6.35 -24.76 -0.16 -1.77 16 14 C -0.11 -1.73 3.92 -88.26 -0.35 -2.07 16 15 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 16 C 0.14 2.78 6.51 -3.69 -0.02 2.76 16 17 N -0.60 -14.97 3.37 -172.28 -0.58 -15.55 16 18 C -0.23 -6.38 10.25 -15.06 -0.15 -6.54 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -27.18 10.23 55.49 0.57 -26.61 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.18 4.38 4.71 -3.60 -0.02 4.36 16 27 C 0.12 2.16 3.90 -65.17 -0.25 1.90 16 28 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 29 C -0.04 -0.52 9.60 -39.09 -0.38 -0.90 16 30 C 0.02 0.22 6.93 -84.23 -0.58 -0.37 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.29 5.08 -52.49 -0.27 1.02 16 36 H 0.08 0.88 6.55 -51.93 -0.34 0.54 16 37 H 0.07 0.62 7.12 -51.93 -0.37 0.25 16 38 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.05 1.29 7.51 -51.93 -0.39 0.90 16 44 H 0.06 1.56 6.86 -51.93 -0.36 1.20 16 45 H 0.14 1.94 7.95 -52.49 -0.42 1.52 16 LS Contribution 363.83 15.07 5.48 5.48 Total: -1.00 -35.65 363.83 -8.23 -43.88 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.89 Total: -0.90 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -3.35 Total: 4.97 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.46 Total: -59.25 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.65 -8.23 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076507178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.663 kcal (2) G-P(sol) polarization free energy of solvation -35.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds