Wall clock time and date at job start Wed Apr 1 2020 01:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28817 * 125.94359 * 2 1 4 4 N 1.28642 * 111.79371 * 180.02562 * 3 2 1 5 5 C 1.34745 * 109.29374 * 0.02562 * 4 3 2 6 6 C 1.39911 * 134.59730 * 180.02562 * 5 4 3 7 7 C 1.36155 * 119.98023 * 179.97438 * 6 5 4 8 8 C 1.40255 * 120.55870 * 0.02562 * 7 6 5 9 9 C 1.47722 * 119.88303 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00047 * 213.13289 * 9 8 7 11 11 N 1.34780 * 119.99668 * 33.13577 * 9 8 7 12 12 C 1.47344 * 125.52369 * 356.51273 * 11 9 8 13 13 C 1.54950 * 104.90163 * 156.77807 * 12 11 9 14 14 C 1.54794 * 101.45357 * 37.25481 * 13 12 11 15 15 H 1.08996 * 112.84232 * 86.23642 * 14 13 12 16 16 C 1.53518 * 109.68636 * 212.92469 * 14 13 12 17 17 N 1.46652 * 107.05027 * 84.83136 * 16 14 13 18 18 C 1.36933 * 125.28388 * 197.40311 * 17 16 14 19 19 H 1.07996 * 120.00523 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99521 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00099 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47072 * 89.99997 * 22 20 18 24 24 H 1.48502 * 109.47143 * 209.99912 * 22 20 18 25 25 H 1.48500 * 109.47001 * 330.00285 * 22 20 18 26 26 C 1.46494 * 109.42261 * 17.38007 * 17 16 14 27 27 C 1.48614 * 125.39991 * 177.25499 * 11 9 8 28 28 H 1.08997 * 113.54683 * 56.36651 * 27 11 9 29 29 C 1.39169 * 120.23817 * 0.25254 * 8 7 6 30 30 C 1.37362 * 125.94418 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47573 * 89.97344 * 1 2 3 32 32 H 1.09004 * 109.46944 * 209.97368 * 1 2 3 33 33 H 1.09000 * 109.47073 * 329.97245 * 1 2 3 34 34 H 1.07999 * 120.00800 * 359.95767 * 6 5 4 35 35 H 1.08000 * 119.72357 * 179.97438 * 7 6 5 36 36 H 1.08997 * 110.35453 * 37.92457 * 12 11 9 37 37 H 1.09000 * 110.35433 * 275.63363 * 12 11 9 38 38 H 1.09004 * 111.02843 * 279.21496 * 13 12 11 39 39 H 1.08995 * 111.03207 * 155.29685 * 13 12 11 40 40 H 1.08996 * 109.91905 * 325.47796 * 16 14 13 41 41 H 1.08997 * 109.91483 * 204.18408 * 16 14 13 42 42 H 0.97002 * 119.99572 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.71126 * 117.76526 * 26 17 16 44 44 H 1.08998 * 109.71213 * 238.36297 * 26 17 16 45 45 H 1.08000 * 120.24634 * 179.74792 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6696 -1.5027 -0.0019 7 6 4.4455 -2.8456 -0.0024 8 6 3.1368 -3.3502 -0.0031 9 6 2.9109 -4.8101 -0.0042 10 8 1.9468 -5.2755 -0.5802 11 7 3.7737 -5.6259 0.6334 12 6 5.0148 -5.2027 1.3053 13 6 5.3064 -6.3166 2.3422 14 6 4.8664 -7.5816 1.5663 15 1 5.6575 -7.9881 0.9362 16 6 4.2950 -8.6164 2.5458 17 7 2.8818 -8.2814 2.7493 18 6 2.1033 -8.7305 3.7823 19 1 2.5238 -9.3868 4.5298 20 6 0.7733 -8.3422 3.8687 21 7 0.2606 -7.5428 2.9574 22 14 -0.2891 -8.9554 5.2775 23 1 -0.1965 -8.0070 6.4164 24 1 -1.7009 -9.0519 4.8272 25 1 0.1857 -10.2947 5.7089 26 6 2.4328 -7.3913 1.6759 27 6 3.6326 -7.1001 0.7578 28 1 3.5466 -7.6117 -0.2008 29 6 2.0504 -2.4805 -0.0085 30 6 2.2712 -1.1121 -0.0005 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5143 34 1 5.6809 -1.1238 -0.0022 35 1 5.2825 -3.5282 -0.0032 36 1 4.8670 -4.2466 1.8075 37 1 5.8303 -5.1318 0.5856 38 1 4.7057 -6.1807 3.2416 39 1 6.3682 -6.3564 2.5853 40 1 4.8293 -8.5645 3.4944 41 1 4.3822 -9.6168 2.1218 42 1 -0.6687 -7.2712 3.0180 43 1 1.6410 -7.8752 1.1041 44 1 2.0615 -6.4594 2.1023 45 1 1.0426 -2.8689 -0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076507178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:18 Heat of formation + Delta-G solvation = 109.725259 kcal Electronic energy + Delta-G solvation = -29955.541541 eV Core-core repulsion = 25975.679992 eV Total energy + Delta-G solvation = -3979.861549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.30237 -41.64960 -39.76613 -38.34342 -36.62929 -35.94372 -34.15348 -32.32194 -31.98777 -31.82697 -30.26679 -28.92966 -28.36004 -26.59995 -25.60137 -24.83428 -23.55879 -22.36338 -22.20265 -21.18827 -20.43895 -19.48532 -18.84464 -18.60331 -17.82775 -17.34845 -17.24251 -16.89812 -16.40645 -15.90650 -15.70925 -15.44701 -15.28429 -15.04805 -14.56953 -14.48995 -14.17823 -14.14358 -13.84131 -13.67770 -13.42434 -13.24234 -13.17250 -13.13737 -12.90839 -12.80155 -12.70128 -12.52155 -12.12650 -11.89153 -11.87669 -11.85294 -11.72060 -11.47423 -11.40509 -11.06682 -10.71543 -10.10998 -9.70452 -9.41854 -8.88589 -7.84157 -5.22318 -0.77469 0.07894 0.97478 1.10803 1.42369 1.44746 1.53591 1.69725 1.92898 2.47958 2.56053 2.82564 3.29422 3.33214 3.43168 3.54690 3.60527 3.68770 3.80129 3.89340 3.94361 4.04182 4.18869 4.21756 4.35048 4.37066 4.46612 4.50558 4.54857 4.60246 4.74110 4.77547 4.83300 4.89498 4.99549 5.08553 5.10679 5.14649 5.22168 5.24108 5.38690 5.46381 5.49746 5.55032 5.62054 5.80830 6.19919 6.53800 7.06043 7.11154 7.12576 7.79727 8.40102 9.23866 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.003403 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.079560 B = 8224.859045 C = 9660.793918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.308 5.308 3 N -0.029 5.029 4 N -0.282 5.282 5 C 0.012 3.988 6 C -0.045 4.045 7 C -0.085 4.085 8 C -0.097 4.097 9 C 0.564 3.436 10 O -0.580 6.580 11 N -0.599 5.599 12 C 0.090 3.910 13 C -0.115 4.115 14 C -0.092 4.092 15 H 0.138 0.862 16 C 0.134 3.866 17 N -0.623 5.623 18 C -0.240 4.240 19 H 0.089 0.911 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.977 3.023 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.264 1.264 26 C 0.200 3.800 27 C 0.118 3.882 28 H 0.083 0.917 29 C -0.048 4.048 30 C 0.003 3.997 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.129 0.871 40 H 0.053 0.947 41 H 0.023 0.977 42 H 0.242 0.758 43 H -0.017 1.017 44 H 0.011 0.989 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 12.523 -6.168 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.110 5.110 3 N -0.010 5.010 4 N -0.156 5.156 5 C -0.115 4.115 6 C -0.067 4.067 7 C -0.106 4.106 8 C -0.104 4.104 9 C 0.353 3.647 10 O -0.460 6.460 11 N -0.331 5.331 12 C -0.030 4.030 13 C -0.153 4.153 14 C -0.112 4.112 15 H 0.156 0.844 16 C 0.009 3.991 17 N -0.350 5.350 18 C -0.369 4.369 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.188 1.188 26 C 0.073 3.927 27 C 0.015 3.985 28 H 0.101 0.899 29 C -0.071 4.071 30 C -0.116 4.116 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.197 0.803 35 H 0.199 0.801 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.066 0.934 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.002 0.998 44 H 0.029 0.971 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.773 13.897 -6.416 19.310 hybrid contribution -2.191 -1.521 0.636 2.742 sum 9.582 12.376 -5.780 16.685 Atomic orbital electron populations 1.22724 0.69516 1.07588 1.06853 1.47483 1.10229 1.02204 1.51054 1.77886 0.97113 1.12890 1.13088 1.75287 1.08082 1.11907 1.20287 1.20547 0.94074 0.91171 1.05685 1.20297 0.98388 0.90265 0.97768 1.21474 0.95563 0.95832 0.97712 1.19646 0.95137 0.91184 1.04399 1.18220 0.81520 0.86488 0.78431 1.90801 1.31071 1.77725 1.46451 1.48830 1.24218 1.06978 1.53116 1.23027 0.85375 0.99109 0.95529 1.22796 1.03605 0.92178 0.96729 1.23026 0.95673 0.96261 0.96192 0.84382 1.21382 0.84085 0.96037 0.97577 1.44439 1.07800 1.55600 1.27132 1.19483 0.92045 1.23463 1.01873 0.89334 1.25718 0.98654 1.00583 1.01274 1.70301 1.13110 1.39841 1.36791 0.85094 0.77511 0.78424 0.78432 1.21197 1.22649 1.18846 1.20791 0.91763 0.92620 0.87506 1.22886 0.97322 0.79980 0.98348 0.89865 1.19964 1.00088 0.88176 0.98827 1.19632 0.91720 0.90652 1.09555 0.87118 0.87513 0.85668 0.80258 0.80115 0.89212 0.86129 0.93438 0.85322 0.92921 0.95936 0.94914 0.99833 0.97087 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 11.40 127.77 1.46 2.42 16 2 N -0.31 -7.13 3.80 -361.28 -1.37 -8.51 16 3 N -0.03 -0.76 13.07 37.02 0.48 -0.28 16 4 N -0.28 -7.82 12.42 -52.38 -0.65 -8.48 16 5 C 0.01 0.29 7.36 39.76 0.29 0.59 16 6 C -0.05 -0.83 10.03 22.19 0.22 -0.61 16 7 C -0.09 -1.60 7.82 22.27 0.17 -1.43 16 8 C -0.10 -2.71 5.58 -20.06 -0.11 -2.82 16 9 C 0.56 20.40 7.26 86.75 0.63 21.03 16 10 O -0.58 -26.95 16.91 -3.94 -0.07 -27.02 16 11 N -0.60 -19.19 2.85 -784.67 -2.24 -21.42 16 12 C 0.09 1.80 5.06 86.88 0.44 2.24 16 13 C -0.12 -2.58 6.35 31.87 0.20 -2.38 16 14 C -0.09 -2.53 3.92 -9.26 -0.04 -2.57 16 15 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 16 C 0.13 4.95 6.51 86.52 0.56 5.52 16 17 N -0.62 -31.81 3.37 -698.96 -2.36 -34.17 16 18 C -0.24 -13.46 10.25 84.04 0.86 -12.60 16 19 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 20 C -0.07 -4.07 5.48 84.86 0.47 -3.60 16 21 N -0.95 -60.40 10.23 21.65 0.22 -60.18 16 22 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 26 C 0.20 10.37 4.71 86.67 0.41 10.78 16 27 C 0.12 4.41 3.90 45.62 0.18 4.58 16 28 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 29 C -0.05 -1.36 9.60 22.59 0.22 -1.14 16 30 C 0.00 0.09 6.93 39.02 0.27 0.36 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.18 2.12 5.08 -2.91 -0.01 2.10 16 36 H 0.09 1.65 6.55 -2.39 -0.02 1.63 16 37 H 0.12 1.28 7.12 -2.39 -0.02 1.26 16 38 H 0.05 1.46 7.93 -2.38 -0.02 1.45 16 39 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 1.82 7.94 -2.39 -0.02 1.80 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 43 H -0.02 -1.04 7.51 -2.39 -0.02 -1.06 16 44 H 0.01 0.66 6.86 -2.39 -0.02 0.64 16 45 H 0.13 3.93 7.95 -2.91 -0.02 3.90 16 Total: -1.00 -87.55 363.83 3.31 -84.24 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.02 Total: 6.68 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 6.23 Total: 20.37 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.91 Total: -133.02 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.07 Total: -27.02 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -87.55 3.31 -84.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076507178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.969 kcal (2) G-P(sol) polarization free energy of solvation -87.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds