Wall clock time and date at job start Wed Apr 1 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40255 * 126.66707 * 2 1 4 4 N 1.28655 * 109.42653 * 179.97438 * 3 2 1 5 5 C 1.35399 * 110.10402 * 0.02562 * 4 3 2 6 6 C 1.40115 * 133.02434 * 179.97438 * 5 4 3 7 7 C 1.37601 * 120.15405 * 179.97438 * 6 5 4 8 8 C 1.38491 * 120.79498 * 0.02562 * 7 6 5 9 9 C 1.39210 * 120.27816 * 0.27570 * 8 7 6 10 10 C 1.47527 * 120.24431 * 179.72877 * 9 8 7 11 11 O 1.21594 * 120.00238 * 130.11355 * 10 9 8 12 12 N 1.34775 * 119.99831 * 310.11462 * 10 9 8 13 13 C 1.47397 * 125.58955 * 4.99646 * 12 10 9 14 14 C 1.54855 * 104.80917 * 204.61179 * 13 12 10 15 15 C 1.55121 * 101.78032 * 322.81286 * 14 13 12 16 16 H 1.09005 * 113.46343 * 159.24109 * 15 14 13 17 17 C 1.54043 * 108.26047 * 286.09534 * 15 14 13 18 18 N 1.46702 * 106.82881 * 135.80378 * 17 15 14 19 19 C 1.36943 * 125.32262 * 161.82081 * 18 17 15 20 20 H 1.07993 * 119.99649 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99702 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47268 * 60.00122 * 23 21 19 25 25 H 1.48504 * 109.47248 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47568 * 300.00116 * 23 21 19 27 27 C 1.46635 * 109.35613 * 341.81893 * 18 17 15 28 28 C 1.46740 * 125.58931 * 184.69785 * 12 10 9 29 29 H 1.08993 * 111.32739 * 56.11598 * 28 12 10 30 30 C 1.36969 * 126.66369 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46954 * 272.58932 * 1 2 3 32 32 H 1.09003 * 109.47191 * 32.58163 * 1 2 3 33 33 H 1.08996 * 109.47216 * 152.58445 * 1 2 3 34 34 H 1.07995 * 119.92257 * 359.97438 * 6 5 4 35 35 H 1.07992 * 119.60514 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.86037 * 180.02562 * 8 7 6 37 37 H 1.08995 * 110.37405 * 323.44216 * 13 12 10 38 38 H 1.08996 * 110.37054 * 85.78255 * 13 12 10 39 39 H 1.08997 * 110.96884 * 80.94359 * 14 13 12 40 40 H 1.09010 * 110.96320 * 204.65977 * 14 13 12 41 41 H 1.08998 * 109.98847 * 255.14414 * 17 15 14 42 42 H 1.08994 * 109.98990 * 16.45990 * 17 15 14 43 43 H 0.97005 * 120.00062 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.75413 * 120.92616 * 27 18 17 45 45 H 1.08998 * 109.75656 * 241.62573 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5313 0.7437 0.0005 5 6 3.5989 -0.6086 0.0004 6 6 4.6697 -1.5123 0.0003 7 6 4.4306 -2.8673 0.0006 8 6 3.1359 -3.3588 0.0005 9 6 2.0530 -2.4840 -0.0057 10 6 0.6741 -3.0085 -0.0119 11 8 -0.1393 -2.5896 0.7890 12 7 0.3160 -3.9519 -0.9052 13 6 1.2216 -4.6194 -1.8576 14 6 0.3049 -5.0853 -3.0154 15 6 -0.9776 -5.5094 -2.2529 16 1 -1.8682 -5.5329 -2.8810 17 6 -0.6956 -6.8452 -1.5395 18 7 -1.2463 -6.7278 -0.1849 19 6 -1.5250 -7.7768 0.6502 20 1 -1.3399 -8.7898 0.3249 21 6 -2.0455 -7.5380 1.9146 22 7 -2.2706 -6.3033 2.3112 23 14 -2.4264 -8.9689 3.0534 24 1 -1.1828 -9.7368 3.3165 25 1 -2.9692 -8.4509 4.3349 26 1 -3.4304 -9.8568 2.4140 27 6 -1.4516 -5.3117 0.1353 28 6 -1.0383 -4.4875 -1.0851 29 1 -1.7549 -3.6924 -1.2911 30 6 2.2828 -1.0987 0.0005 31 1 -0.3633 0.0464 1.0267 32 1 -0.3634 0.8659 -0.5534 33 1 -0.3633 -0.9122 -0.4732 34 1 5.6851 -1.1444 0.0000 35 1 5.2626 -3.5559 0.0001 36 1 2.9656 -4.4253 0.0012 37 1 1.9700 -3.9174 -2.2252 38 1 1.7029 -5.4763 -1.3864 39 1 0.0971 -4.2651 -3.7025 40 1 0.7434 -5.9322 -3.5434 41 1 -1.1843 -7.6618 -2.0709 42 1 0.3788 -7.0221 -1.4909 43 1 -2.6347 -6.1364 3.1948 44 1 -2.5025 -5.1341 0.3636 45 1 -0.8367 -5.0346 0.9916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076650996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:21 Heat of formation + Delta-G solvation = 128.642554 kcal Electronic energy + Delta-G solvation = -30687.308895 eV Core-core repulsion = 26708.267661 eV Total energy + Delta-G solvation = -3979.041234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24704 -40.37238 -38.26526 -37.29698 -34.88982 -34.57113 -32.41100 -31.02978 -30.91096 -30.43011 -28.80034 -27.50065 -26.51297 -24.78182 -24.62144 -23.03776 -22.79426 -21.77001 -20.60208 -19.74218 -18.92228 -18.06867 -17.21105 -16.93419 -16.64012 -16.18444 -15.99751 -15.51397 -15.11061 -14.68221 -14.57495 -14.05534 -13.85831 -13.53116 -13.44861 -13.12637 -12.99530 -12.90764 -12.54539 -12.28607 -12.21380 -12.17766 -11.91038 -11.81812 -11.52737 -11.19157 -11.15496 -11.06294 -10.76878 -10.75990 -10.55853 -10.32441 -10.23873 -9.94550 -9.73697 -9.62822 -9.04927 -8.61543 -8.46926 -8.29828 -6.84931 -5.70639 -3.06877 0.15931 1.09094 1.91064 2.01580 2.81769 3.09233 3.39081 3.43290 3.45244 3.45694 3.89981 4.31848 4.39071 4.46992 4.55297 4.65909 4.70019 4.88907 4.95024 5.04344 5.14449 5.18435 5.37024 5.41922 5.44292 5.51818 5.53879 5.61768 5.65866 5.67194 5.74213 5.79472 5.93626 6.00789 6.05905 6.11772 6.21447 6.32238 6.38167 6.44968 6.48158 6.56599 6.77909 7.47318 7.60841 7.76110 7.85488 7.86330 8.25107 8.32050 9.20576 9.81694 10.44335 11.39112 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.003524 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.351766 B = 7943.513194 C = 8268.952583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.382 5.382 3 N -0.011 5.011 4 N -0.221 5.221 5 C -0.026 4.026 6 C -0.019 4.019 7 C -0.139 4.139 8 C -0.034 4.034 9 C -0.120 4.120 10 C 0.569 3.431 11 O -0.520 6.520 12 N -0.593 5.593 13 C 0.097 3.903 14 C -0.124 4.124 15 C -0.110 4.110 16 H 0.099 0.901 17 C 0.142 3.858 18 N -0.602 5.602 19 C -0.236 4.236 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.175 3.825 28 C 0.115 3.885 29 H 0.078 0.922 30 C 0.125 3.875 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.053 0.947 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 7.814 -11.319 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.175 5.175 3 N 0.009 4.991 4 N -0.100 5.100 5 C -0.150 4.150 6 C -0.041 4.041 7 C -0.160 4.160 8 C -0.056 4.056 9 C -0.128 4.128 10 C 0.356 3.644 11 O -0.397 6.397 12 N -0.326 5.326 13 C -0.026 4.026 14 C -0.163 4.163 15 C -0.130 4.130 16 H 0.117 0.883 17 C 0.015 3.985 18 N -0.329 5.329 19 C -0.364 4.364 20 H 0.095 0.905 21 C -0.201 4.201 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.050 3.950 28 C 0.012 3.988 29 H 0.096 0.904 30 C 0.001 3.999 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.163 0.837 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.521 9.659 -10.598 17.785 hybrid contribution -0.478 -1.831 0.771 2.043 sum 10.042 7.828 -9.827 16.084 Atomic orbital electron populations 1.22267 0.71759 1.04875 1.05150 1.50068 1.08324 1.03072 1.56019 1.81611 0.94017 1.07765 1.15668 1.74835 1.11489 1.10216 1.13413 1.19874 0.92900 0.90286 1.11941 1.20569 0.97472 0.91364 0.94688 1.20935 0.96956 0.94731 1.03348 1.21452 0.91143 1.00000 0.93022 1.18889 0.94851 0.89289 1.09727 1.17600 0.86794 0.79361 0.80625 1.90862 1.52279 1.59535 1.37052 1.48335 1.10730 1.37933 1.35564 1.22465 0.93276 0.97026 0.89850 1.22762 0.95813 1.01216 0.96480 1.23166 0.97802 0.96564 0.95464 0.88264 1.21303 0.96328 0.93681 0.87140 1.44213 1.74959 1.02487 1.11237 1.18951 1.36832 0.86217 0.94444 0.90484 1.24826 1.01162 0.96538 0.97582 1.69970 1.49429 1.17230 1.19540 0.86231 0.78095 0.81307 0.80269 1.21178 1.21591 1.21137 1.21144 1.00414 0.81876 0.91559 1.22567 0.82378 0.95593 0.98236 0.90370 1.18969 0.91071 0.89117 1.00752 0.89122 0.89225 0.88292 0.84075 0.83827 0.83740 0.90904 0.90695 0.91071 0.89730 0.94694 0.96416 0.93577 0.92924 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.27 10.08 59.85 0.60 1.88 16 2 N -0.38 -5.66 4.10 -65.27 -0.27 -5.93 16 3 N -0.01 -0.16 13.72 60.35 0.83 0.67 16 4 N -0.22 -3.32 12.40 32.15 0.40 -2.93 16 5 C -0.03 -0.35 7.26 -84.76 -0.62 -0.97 16 6 C -0.02 -0.19 10.09 -39.11 -0.39 -0.58 16 7 C -0.14 -1.25 9.98 -39.72 -0.40 -1.65 16 8 C -0.03 -0.39 8.15 -39.13 -0.32 -0.71 16 9 C -0.12 -1.74 5.16 -104.92 -0.54 -2.28 16 10 C 0.57 9.79 5.78 -12.47 -0.07 9.72 16 11 O -0.52 -10.73 14.02 5.28 0.07 -10.65 16 12 N -0.59 -9.49 2.99 -163.94 -0.49 -9.98 16 13 C 0.10 1.18 4.99 -2.57 -0.01 1.17 16 14 C -0.12 -1.38 6.35 -24.63 -0.16 -1.53 16 15 C -0.11 -1.66 4.35 -87.74 -0.38 -2.04 16 16 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 17 C 0.14 2.65 6.45 -3.39 -0.02 2.63 16 18 N -0.60 -14.78 3.38 -172.36 -0.58 -15.36 16 19 C -0.24 -6.45 10.25 -15.06 -0.15 -6.60 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 22 N -0.92 -27.19 10.24 55.49 0.57 -26.62 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.18 4.22 4.87 -3.99 -0.02 4.20 16 28 C 0.12 2.07 3.58 -66.61 -0.24 1.83 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 C 0.12 1.86 6.82 -83.92 -0.57 1.29 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.37 5.53 -51.93 -0.29 1.08 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.14 1.55 6.83 -52.49 -0.36 1.19 16 37 H 0.07 0.74 7.05 -51.93 -0.37 0.37 16 38 H 0.07 0.94 6.65 -51.93 -0.35 0.59 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.79 8.08 -51.92 -0.42 0.37 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.02 0.33 6.52 -51.93 -0.34 -0.01 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 1.44 7.33 -51.93 -0.38 1.06 16 45 H 0.06 1.60 6.51 -51.93 -0.34 1.26 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -34.29 356.99 -8.27 -42.56 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.76 Total: -0.27 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -3.39 Total: 6.14 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.46 Total: -60.15 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.29 -8.27 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076650996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.199 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds