Wall clock time and date at job start Wed Apr 1 2020 01:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40255 * 126.66707 * 2 1 4 4 N 1.28655 * 109.42653 * 179.97438 * 3 2 1 5 5 C 1.35399 * 110.10402 * 0.02562 * 4 3 2 6 6 C 1.40115 * 133.02434 * 179.97438 * 5 4 3 7 7 C 1.37601 * 120.15405 * 179.97438 * 6 5 4 8 8 C 1.38491 * 120.79498 * 0.02562 * 7 6 5 9 9 C 1.39210 * 120.27816 * 0.27570 * 8 7 6 10 10 C 1.47527 * 120.24431 * 179.72877 * 9 8 7 11 11 O 1.21594 * 120.00238 * 130.11355 * 10 9 8 12 12 N 1.34775 * 119.99831 * 310.11462 * 10 9 8 13 13 C 1.47397 * 125.58955 * 4.99646 * 12 10 9 14 14 C 1.54855 * 104.80917 * 204.61179 * 13 12 10 15 15 C 1.55121 * 101.78032 * 322.81286 * 14 13 12 16 16 H 1.09005 * 113.46343 * 159.24109 * 15 14 13 17 17 C 1.54043 * 108.26047 * 286.09534 * 15 14 13 18 18 N 1.46702 * 106.82881 * 135.80378 * 17 15 14 19 19 C 1.36943 * 125.32262 * 161.82081 * 18 17 15 20 20 H 1.07993 * 119.99649 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99849 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99702 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47268 * 60.00122 * 23 21 19 25 25 H 1.48504 * 109.47248 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47568 * 300.00116 * 23 21 19 27 27 C 1.46635 * 109.35613 * 341.81893 * 18 17 15 28 28 C 1.46740 * 125.58931 * 184.69785 * 12 10 9 29 29 H 1.08993 * 111.32739 * 56.11598 * 28 12 10 30 30 C 1.36969 * 126.66369 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46954 * 272.58932 * 1 2 3 32 32 H 1.09003 * 109.47191 * 32.58163 * 1 2 3 33 33 H 1.08996 * 109.47216 * 152.58445 * 1 2 3 34 34 H 1.07995 * 119.92257 * 359.97438 * 6 5 4 35 35 H 1.07992 * 119.60514 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.86037 * 180.02562 * 8 7 6 37 37 H 1.08995 * 110.37405 * 323.44216 * 13 12 10 38 38 H 1.08996 * 110.37054 * 85.78255 * 13 12 10 39 39 H 1.08997 * 110.96884 * 80.94359 * 14 13 12 40 40 H 1.09010 * 110.96320 * 204.65977 * 14 13 12 41 41 H 1.08998 * 109.98847 * 255.14414 * 17 15 14 42 42 H 1.08994 * 109.98990 * 16.45990 * 17 15 14 43 43 H 0.97005 * 120.00062 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.75413 * 120.92616 * 27 18 17 45 45 H 1.08998 * 109.75656 * 241.62573 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5313 0.7437 0.0005 5 6 3.5989 -0.6086 0.0004 6 6 4.6697 -1.5123 0.0003 7 6 4.4306 -2.8673 0.0006 8 6 3.1359 -3.3588 0.0005 9 6 2.0530 -2.4840 -0.0057 10 6 0.6741 -3.0085 -0.0119 11 8 -0.1393 -2.5896 0.7890 12 7 0.3160 -3.9519 -0.9052 13 6 1.2216 -4.6194 -1.8576 14 6 0.3049 -5.0853 -3.0154 15 6 -0.9776 -5.5094 -2.2529 16 1 -1.8682 -5.5329 -2.8810 17 6 -0.6956 -6.8452 -1.5395 18 7 -1.2463 -6.7278 -0.1849 19 6 -1.5250 -7.7768 0.6502 20 1 -1.3399 -8.7898 0.3249 21 6 -2.0455 -7.5380 1.9146 22 7 -2.2706 -6.3033 2.3112 23 14 -2.4264 -8.9689 3.0534 24 1 -1.1828 -9.7368 3.3165 25 1 -2.9692 -8.4509 4.3349 26 1 -3.4304 -9.8568 2.4140 27 6 -1.4516 -5.3117 0.1353 28 6 -1.0383 -4.4875 -1.0851 29 1 -1.7549 -3.6924 -1.2911 30 6 2.2828 -1.0987 0.0005 31 1 -0.3633 0.0464 1.0267 32 1 -0.3634 0.8659 -0.5534 33 1 -0.3633 -0.9122 -0.4732 34 1 5.6851 -1.1444 0.0000 35 1 5.2626 -3.5559 0.0001 36 1 2.9656 -4.4253 0.0012 37 1 1.9700 -3.9174 -2.2252 38 1 1.7029 -5.4763 -1.3864 39 1 0.0971 -4.2651 -3.7025 40 1 0.7434 -5.9322 -3.5434 41 1 -1.1843 -7.6618 -2.0709 42 1 0.3788 -7.0221 -1.4909 43 1 -2.6347 -6.1364 3.1948 44 1 -2.5025 -5.1341 0.3636 45 1 -0.8367 -5.0346 0.9916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076650996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:20 Heat of formation + Delta-G solvation = 104.576300 kcal Electronic energy + Delta-G solvation = -30688.352486 eV Core-core repulsion = 26708.267661 eV Total energy + Delta-G solvation = -3980.084825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28059 -41.67343 -39.57054 -38.34129 -36.54623 -35.63601 -34.03254 -32.55131 -32.01485 -31.40673 -30.37812 -28.58097 -27.95541 -26.59867 -25.68635 -24.19796 -23.77779 -23.00889 -22.18053 -20.98903 -20.16354 -19.21516 -18.76385 -18.23148 -17.94164 -17.27240 -17.12779 -16.86256 -16.44104 -16.06964 -15.84128 -15.56454 -15.19599 -14.73373 -14.59611 -14.54826 -14.24418 -14.04294 -13.86953 -13.53153 -13.49386 -13.15846 -13.04754 -13.03348 -12.94306 -12.76337 -12.67765 -12.41980 -12.25935 -12.18815 -11.85661 -11.83397 -11.77572 -11.59922 -11.40523 -10.97979 -10.69670 -10.03524 -9.70021 -9.38161 -8.88194 -7.83386 -5.21131 -0.81413 0.13567 0.85973 0.99679 1.43212 1.46633 1.53297 1.60646 1.88449 2.48597 2.50223 2.92185 3.27307 3.33868 3.39074 3.55545 3.57163 3.67503 3.79958 3.81364 4.01652 4.09058 4.15282 4.24392 4.26247 4.42036 4.48807 4.54322 4.57989 4.61372 4.65180 4.74947 4.82016 4.87687 4.94423 5.11420 5.16423 5.18423 5.20975 5.28251 5.38097 5.41901 5.46330 5.60297 5.64162 5.81436 6.19900 6.48730 6.78848 7.02418 7.09715 7.80671 8.41599 9.24538 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.003524 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.351766 B = 7943.513194 C = 8268.952583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.390 5.390 3 N -0.031 5.031 4 N -0.230 5.230 5 C -0.040 4.040 6 C -0.006 4.006 7 C -0.120 4.120 8 C -0.020 4.020 9 C -0.147 4.147 10 C 0.563 3.437 11 O -0.571 6.571 12 N -0.592 5.592 13 C 0.090 3.910 14 C -0.106 4.106 15 C -0.098 4.098 16 H 0.117 0.883 17 C 0.135 3.865 18 N -0.624 5.624 19 C -0.241 4.241 20 H 0.089 0.911 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.274 1.274 25 H -0.302 1.302 26 H -0.273 1.273 27 C 0.195 3.805 28 C 0.120 3.880 29 H 0.076 0.924 30 C 0.105 3.895 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.043 0.957 42 H 0.036 0.964 43 H 0.241 0.759 44 H 0.000 1.000 45 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.463 6.244 -14.097 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.184 5.184 3 N -0.011 5.011 4 N -0.108 5.108 5 C -0.165 4.165 6 C -0.028 4.028 7 C -0.141 4.141 8 C -0.042 4.042 9 C -0.154 4.154 10 C 0.353 3.647 11 O -0.452 6.452 12 N -0.324 5.324 13 C -0.031 4.031 14 C -0.144 4.144 15 C -0.117 4.117 16 H 0.135 0.865 17 C 0.010 3.990 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.107 0.893 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.804 3.196 24 H -0.200 1.200 25 H -0.228 1.228 26 H -0.199 1.199 27 C 0.069 3.931 28 C 0.016 3.984 29 H 0.094 0.906 30 C -0.018 4.018 31 H 0.096 0.904 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.194 0.806 35 H 0.209 0.791 36 H 0.172 0.828 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 13.913 8.060 -13.454 20.966 hybrid contribution -1.444 -1.424 1.626 2.599 sum 12.469 6.636 -11.828 18.424 Atomic orbital electron populations 1.22220 0.71433 1.05333 1.04634 1.50196 1.08693 1.03252 1.56231 1.81553 0.94340 1.08110 1.17099 1.74768 1.11457 1.11129 1.13469 1.20371 0.93508 0.90118 1.12517 1.21101 0.98078 0.91232 0.92347 1.21404 0.96901 0.94917 1.00844 1.21753 0.91467 1.00047 0.90919 1.18741 0.93872 0.89570 1.13244 1.18148 0.87682 0.79017 0.79861 1.90829 1.54077 1.61187 1.39091 1.48377 1.10508 1.37588 1.35932 1.22778 0.93528 0.97436 0.89392 1.22801 0.92673 1.03082 0.95875 1.23155 1.01034 0.92918 0.94602 0.86501 1.21600 0.96797 0.96104 0.84479 1.44525 1.75026 1.01978 1.13474 1.19440 1.35175 0.87540 0.94818 0.89337 1.25698 1.02103 0.98800 0.99539 1.70273 1.51154 1.19506 1.19122 0.85188 0.78285 0.78424 0.77671 1.19967 1.22844 1.19884 1.20653 0.96398 0.83143 0.92909 1.22261 0.83934 0.95505 0.96744 0.90571 1.19278 0.91810 0.89316 1.01437 0.90413 0.86530 0.89664 0.80558 0.79125 0.82795 0.87994 0.90675 0.88722 0.86573 0.93848 0.94664 0.94933 0.98202 0.97656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.86 10.08 127.77 1.29 4.15 16 2 N -0.39 -11.95 4.10 -360.43 -1.48 -13.43 16 3 N -0.03 -0.98 13.72 37.02 0.51 -0.47 16 4 N -0.23 -6.78 12.40 -52.20 -0.65 -7.43 16 5 C -0.04 -1.05 7.26 39.58 0.29 -0.76 16 6 C -0.01 -0.09 10.09 22.57 0.23 0.13 16 7 C -0.12 -1.58 9.98 22.18 0.22 -1.36 16 8 C -0.02 -0.40 8.15 22.56 0.18 -0.22 16 9 C -0.15 -4.18 5.16 -20.06 -0.10 -4.29 16 10 C 0.56 20.09 5.78 86.69 0.50 20.59 16 11 O -0.57 -25.59 14.02 -4.01 -0.06 -25.65 16 12 N -0.59 -18.83 2.99 -790.85 -2.37 -21.20 16 13 C 0.09 1.89 4.99 86.84 0.43 2.33 16 14 C -0.11 -1.86 6.35 31.95 0.20 -1.65 16 15 C -0.10 -2.70 4.35 -8.93 -0.04 -2.74 16 16 H 0.12 2.86 8.14 -2.38 -0.02 2.85 16 17 C 0.13 4.78 6.45 86.69 0.56 5.34 16 18 N -0.62 -31.17 3.38 -699.22 -2.36 -33.53 16 19 C -0.24 -13.33 10.25 84.03 0.86 -12.47 16 20 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 22 N -0.95 -60.26 10.24 21.65 0.22 -60.04 16 23 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 27 C 0.20 9.97 4.87 86.34 0.42 10.39 16 28 C 0.12 4.39 3.58 45.72 0.16 4.56 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 C 0.11 3.13 6.82 39.41 0.27 3.40 16 31 H 0.08 2.27 8.14 -2.38 -0.02 2.26 16 32 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.57 5.53 -2.39 -0.01 2.56 16 34 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.15 2.80 6.83 -2.91 -0.02 2.78 16 37 H 0.10 1.61 7.05 -2.39 -0.02 1.59 16 38 H 0.08 1.60 6.65 -2.39 -0.02 1.59 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.12 1.42 8.08 -2.38 -0.02 1.40 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.16 6.52 -2.39 -0.02 1.15 16 43 H 0.24 15.17 8.31 -92.70 -0.77 14.40 16 44 H 0.00 -0.01 7.33 -2.39 -0.02 -0.03 16 45 H 0.01 0.32 6.51 -2.39 -0.02 0.30 16 Total: -1.00 -83.87 356.99 2.82 -81.05 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.03 Total: 8.33 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 5.94 Total: 23.89 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -6.12 Total: -136.09 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.06 Total: -25.65 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -83.87 2.82 -81.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076650996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.627 kcal (2) G-P(sol) polarization free energy of solvation -83.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds