Wall clock time and date at job start Wed Apr 1 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40227 * 126.65256 * 2 1 4 4 N 1.28648 * 109.50385 * 179.97438 * 3 2 1 5 5 C 1.35420 * 110.13383 * 359.97438 * 4 3 2 6 6 C 1.39800 * 133.04870 * 179.97438 * 5 4 3 7 7 C 1.38876 * 119.56141 * 180.02562 * 6 5 4 8 8 C 1.47720 * 119.86374 * 180.02562 * 7 6 5 9 9 O 1.21565 * 120.00019 * 187.79702 * 8 7 6 10 10 N 1.34775 * 119.99965 * 7.79741 * 8 7 6 11 11 C 1.47810 * 135.00853 * 357.50698 * 10 8 7 12 12 C 1.54655 * 85.78748 * 153.82716 * 11 10 8 13 13 H 1.09007 * 115.01593 * 139.91450 * 12 11 10 14 14 C 1.53010 * 110.84015 * 270.22676 * 12 11 10 15 15 C 1.53096 * 109.44633 * 143.89038 * 14 12 11 16 16 N 1.46612 * 108.01433 * 301.02705 * 15 14 12 17 17 C 1.36935 * 119.89026 * 237.32694 * 16 15 14 18 18 H 1.08008 * 119.99883 * 147.26707 * 17 16 15 19 19 C 1.38811 * 120.00450 * 327.26359 * 17 16 15 20 20 N 1.31620 * 119.99458 * 335.88106 * 19 17 16 21 21 Si 1.86798 * 120.00424 * 155.87952 * 19 17 16 22 22 H 1.48496 * 109.47105 * 60.00055 * 21 19 17 23 23 H 1.48501 * 109.47035 * 300.00208 * 21 19 17 24 24 H 1.48498 * 109.47178 * 180.02562 * 21 19 17 25 25 C 1.45683 * 120.21661 * 57.59924 * 16 15 14 26 26 C 1.46814 * 135.01405 * 177.53694 * 10 8 7 27 27 H 1.08996 * 111.56318 * 94.45985 * 26 10 8 28 28 C 1.40261 * 120.27436 * 0.27874 * 7 6 5 29 29 C 1.36266 * 120.45161 * 359.43935 * 28 7 6 30 30 C 1.37265 * 126.65842 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46753 * 90.02550 * 1 2 3 32 32 H 1.08999 * 109.47038 * 210.01852 * 1 2 3 33 33 H 1.08995 * 109.47435 * 330.02582 * 1 2 3 34 34 H 1.07995 * 120.21696 * 359.97438 * 6 5 4 35 35 H 1.08997 * 113.82063 * 39.61283 * 11 10 8 36 36 H 1.09002 * 113.81951 * 268.04087 * 11 10 8 37 37 H 1.09004 * 109.47108 * 23.89989 * 14 12 11 38 38 H 1.08998 * 109.47576 * 263.89245 * 14 12 11 39 39 H 1.09007 * 109.75136 * 181.39353 * 15 14 12 40 40 H 1.09002 * 109.79188 * 60.68176 * 15 14 12 41 41 H 0.97005 * 120.00527 * 354.22768 * 20 19 17 42 42 H 1.08988 * 108.71592 * 81.47585 * 25 16 15 43 43 H 1.09001 * 108.71026 * 199.50099 * 25 16 15 44 44 H 1.08001 * 119.77240 * 179.70237 * 28 7 6 45 45 H 1.07994 * 119.92508 * 180.25505 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6067 0.0015 6 6 4.6718 -1.5065 0.0019 7 6 4.4187 -2.8720 0.0024 8 6 5.5442 -3.8287 0.0034 9 8 5.3319 -5.0172 -0.1390 10 7 6.8065 -3.3840 0.1622 11 6 7.4356 -2.0547 0.3105 12 6 8.5616 -2.7983 1.0662 13 1 9.5714 -2.4512 0.8466 14 6 8.2560 -2.8714 2.5637 15 6 8.7443 -4.2120 3.1187 16 7 8.0583 -5.2822 2.3882 17 6 7.3149 -6.2071 3.0716 18 1 6.4337 -6.6347 2.6165 19 6 7.6938 -6.5951 4.3494 20 7 8.9490 -6.4776 4.7277 21 14 6.4224 -7.2840 5.5320 22 1 5.8173 -8.5087 4.9498 23 1 5.3623 -6.2704 5.7644 24 1 7.0770 -7.6198 6.8219 25 6 8.1697 -5.3682 0.9382 26 6 8.1267 -4.0190 0.2590 27 1 8.6244 -4.0582 -0.7099 28 6 3.0988 -3.3465 -0.0034 29 6 2.0515 -2.4747 0.0019 30 6 2.2845 -1.1011 0.0005 31 1 -0.3633 -0.0005 -1.0278 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3634 0.8902 0.5134 34 1 5.6885 -1.1421 0.0010 35 1 6.8669 -1.3657 0.9349 36 1 7.7563 -1.6118 -0.6324 37 1 7.1807 -2.7835 2.7198 38 1 8.7657 -2.0573 3.0789 39 1 8.5068 -4.2797 4.1804 40 1 9.8214 -4.3003 2.9759 41 1 9.6241 -6.1995 4.0891 42 1 9.1095 -5.8602 0.6882 43 1 7.3481 -5.9765 0.5599 44 1 2.9113 -4.4101 -0.0078 45 1 1.0386 -2.8494 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084452716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:32 Heat of formation + Delta-G solvation = 158.475485 kcal Electronic energy + Delta-G solvation = -30081.563283 eV Core-core repulsion = 26103.815703 eV Total energy + Delta-G solvation = -3977.747581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33120 -40.75599 -38.50045 -36.89496 -35.56208 -35.01197 -32.09839 -31.13752 -30.93857 -30.59807 -28.68379 -27.73057 -26.99046 -24.61171 -23.80839 -23.77035 -22.69082 -21.58808 -21.04890 -20.24334 -18.31543 -17.82725 -17.53021 -17.24854 -16.50817 -16.41717 -15.82392 -15.51345 -15.10839 -14.58313 -14.19558 -14.11166 -13.98341 -13.71901 -13.53746 -13.47520 -13.43806 -12.95399 -12.78765 -12.68543 -12.41016 -12.13657 -12.03524 -11.83723 -11.80291 -11.24490 -10.98276 -10.97734 -10.78183 -10.66508 -10.49578 -10.08935 -9.94275 -9.88272 -9.41456 -9.15284 -9.11792 -8.62899 -8.42416 -8.24399 -6.76538 -5.98875 -3.19975 0.19559 0.70511 1.75565 1.93819 2.85902 2.95004 3.54829 3.56833 3.70401 3.73755 3.75378 4.03262 4.21806 4.46613 4.52855 4.62784 4.65459 4.67233 4.83907 4.88190 4.96555 5.08145 5.15497 5.21809 5.28397 5.37701 5.44120 5.55203 5.62661 5.65823 5.74975 5.81339 5.89404 5.91223 6.08827 6.13992 6.15653 6.35858 6.38786 6.47543 6.52468 6.74599 6.90167 7.06043 7.21811 7.69184 7.98084 8.20803 8.43631 8.68001 9.22849 9.93187 10.34870 11.28117 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.003420 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.304494 B = 8185.064855 C = 9057.358124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.400 5.400 3 N -0.012 5.012 4 N -0.210 5.210 5 C -0.028 4.028 6 C -0.014 4.014 7 C -0.130 4.130 8 C 0.585 3.415 9 O -0.525 6.525 10 N -0.623 5.623 11 C 0.082 3.918 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.120 4.120 15 C 0.152 3.848 16 N -0.588 5.588 17 C -0.342 4.342 18 H 0.053 0.947 19 C -0.022 4.022 20 N -0.917 5.917 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.286 1.286 25 C 0.143 3.857 26 C 0.134 3.866 27 H 0.079 0.921 28 C -0.013 4.013 29 C -0.132 4.132 30 C 0.103 3.897 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.268 0.732 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.152 0.848 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 14.121 -11.497 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.195 5.195 3 N 0.008 4.992 4 N -0.089 5.089 5 C -0.151 4.151 6 C -0.036 4.036 7 C -0.136 4.136 8 C 0.375 3.625 9 O -0.402 6.402 10 N -0.358 5.358 11 C -0.040 4.040 12 C -0.124 4.124 13 H 0.109 0.891 14 C -0.160 4.160 15 C 0.026 3.974 16 N -0.312 5.312 17 C -0.472 4.472 18 H 0.071 0.929 19 C -0.224 4.224 20 N -0.557 5.557 21 Si 0.893 3.107 22 H -0.219 1.219 23 H -0.222 1.222 24 H -0.211 1.211 25 C 0.016 3.984 26 C 0.030 3.970 27 H 0.097 0.903 28 C -0.035 4.035 29 C -0.154 4.154 30 C -0.019 4.019 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.174 0.826 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.092 0.908 44 H 0.170 0.830 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.770 14.392 -10.048 21.707 hybrid contribution -0.193 -0.302 -1.735 1.771 sum -12.963 14.090 -11.782 22.481 Atomic orbital electron populations 1.22010 0.72771 1.05310 1.04087 1.50073 1.07841 1.03496 1.58046 1.81603 0.94071 1.07602 1.15893 1.74833 1.11262 1.10425 1.12416 1.19776 0.93151 0.90103 1.12091 1.21351 0.98893 0.90618 0.92751 1.19877 0.94544 0.92571 1.06596 1.17447 0.80855 0.87416 0.76762 1.90791 1.83547 1.16178 1.49714 1.49640 1.04895 1.09708 1.71524 1.23864 0.93068 0.87249 0.99861 1.22895 0.97712 0.94947 0.96883 0.89061 1.21930 1.01580 1.00237 0.92236 1.20824 0.93830 0.85199 0.97549 1.43542 1.58882 1.28835 0.99932 1.19961 1.05402 1.20330 1.01484 0.92916 1.25840 0.99438 0.98505 0.98651 1.70782 1.00021 1.45656 1.39218 0.83559 0.74857 0.75972 0.76353 1.21937 1.22200 1.21149 1.20267 0.99835 0.92200 0.86106 1.22471 0.79786 0.96802 0.97929 0.90307 1.20946 0.90037 1.01062 0.91499 1.19717 1.00529 0.87859 1.07274 1.19512 0.90929 0.90593 1.00854 0.89964 0.88891 0.88446 0.82616 0.89447 0.89486 0.91989 0.92473 0.90197 0.96278 0.92154 0.96368 0.90843 0.82997 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.52 59.85 0.69 1.19 16 2 N -0.40 -4.16 4.11 -65.43 -0.27 -4.43 16 3 N -0.01 -0.15 13.72 60.35 0.83 0.68 16 4 N -0.21 -2.96 12.40 32.15 0.40 -2.56 16 5 C -0.03 -0.37 7.26 -84.76 -0.62 -0.99 16 6 C -0.01 -0.18 9.19 -38.76 -0.36 -0.54 16 7 C -0.13 -1.89 5.87 -105.03 -0.62 -2.50 16 8 C 0.59 10.46 7.90 -12.39 -0.10 10.36 16 9 O -0.53 -11.30 15.54 5.31 0.08 -11.22 16 10 N -0.62 -10.14 3.34 -174.98 -0.59 -10.73 16 11 C 0.08 1.00 5.93 -3.00 -0.02 0.98 16 12 C -0.11 -1.52 4.39 -89.97 -0.40 -1.92 16 13 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -2.12 5.66 -26.68 -0.15 -2.27 16 15 C 0.15 3.44 4.71 -3.93 -0.02 3.43 16 16 N -0.59 -14.81 2.79 -174.87 -0.49 -15.30 16 17 C -0.34 -9.84 9.36 -15.06 -0.14 -9.98 16 18 H 0.05 1.60 7.93 -52.48 -0.42 1.19 16 19 C -0.02 -0.65 4.64 -17.43 -0.08 -0.73 16 20 N -0.92 -27.53 12.50 55.49 0.69 -26.84 16 21 Si 1.06 25.99 29.98 -169.99 -5.10 20.89 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.14 3.13 6.21 -5.43 -0.03 3.09 16 26 C 0.13 2.25 4.23 -69.42 -0.29 1.96 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 C -0.01 -0.17 9.51 -39.53 -0.38 -0.54 16 29 C -0.13 -1.36 9.97 -39.89 -0.40 -1.76 16 30 C 0.10 1.21 6.93 -84.10 -0.58 0.63 16 31 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.16 1.82 3.77 -52.49 -0.20 1.62 16 35 H 0.09 1.00 6.05 -51.93 -0.31 0.69 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 2.06 6.40 -51.93 -0.33 1.73 16 40 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 41 H 0.27 8.06 6.94 -40.82 -0.28 7.78 16 42 H 0.02 0.41 8.14 -51.94 -0.42 -0.02 16 43 H 0.07 1.80 6.41 -51.93 -0.33 1.47 16 44 H 0.15 1.88 7.64 -52.49 -0.40 1.48 16 45 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -36.02 362.99 -8.14 -44.16 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.69 Total: -0.54 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.48 Total: 0.42 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.58 Total: -59.18 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.10 Total: 20.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.02 -8.14 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084452716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.638 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds