Wall clock time and date at job start Wed Apr 1 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40227 * 126.65256 * 2 1 4 4 N 1.28648 * 109.50385 * 179.97438 * 3 2 1 5 5 C 1.35420 * 110.13383 * 359.97438 * 4 3 2 6 6 C 1.39800 * 133.04870 * 179.97438 * 5 4 3 7 7 C 1.38876 * 119.56141 * 180.02562 * 6 5 4 8 8 C 1.47720 * 119.86374 * 180.02562 * 7 6 5 9 9 O 1.21565 * 120.00019 * 187.79702 * 8 7 6 10 10 N 1.34775 * 119.99965 * 7.79741 * 8 7 6 11 11 C 1.47810 * 135.00853 * 357.50698 * 10 8 7 12 12 C 1.54655 * 85.78748 * 153.82716 * 11 10 8 13 13 H 1.09007 * 115.01593 * 139.91450 * 12 11 10 14 14 C 1.53010 * 110.84015 * 270.22676 * 12 11 10 15 15 C 1.53096 * 109.44633 * 143.89038 * 14 12 11 16 16 N 1.46612 * 108.01433 * 301.02705 * 15 14 12 17 17 C 1.36935 * 119.89026 * 237.32694 * 16 15 14 18 18 H 1.08008 * 119.99883 * 147.26707 * 17 16 15 19 19 C 1.38811 * 120.00450 * 327.26359 * 17 16 15 20 20 N 1.31620 * 119.99458 * 335.88106 * 19 17 16 21 21 Si 1.86798 * 120.00424 * 155.87952 * 19 17 16 22 22 H 1.48496 * 109.47105 * 60.00055 * 21 19 17 23 23 H 1.48501 * 109.47035 * 300.00208 * 21 19 17 24 24 H 1.48498 * 109.47178 * 180.02562 * 21 19 17 25 25 C 1.45683 * 120.21661 * 57.59924 * 16 15 14 26 26 C 1.46814 * 135.01405 * 177.53694 * 10 8 7 27 27 H 1.08996 * 111.56318 * 94.45985 * 26 10 8 28 28 C 1.40261 * 120.27436 * 0.27874 * 7 6 5 29 29 C 1.36266 * 120.45161 * 359.43935 * 28 7 6 30 30 C 1.37265 * 126.65842 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46753 * 90.02550 * 1 2 3 32 32 H 1.08999 * 109.47038 * 210.01852 * 1 2 3 33 33 H 1.08995 * 109.47435 * 330.02582 * 1 2 3 34 34 H 1.07995 * 120.21696 * 359.97438 * 6 5 4 35 35 H 1.08997 * 113.82063 * 39.61283 * 11 10 8 36 36 H 1.09002 * 113.81951 * 268.04087 * 11 10 8 37 37 H 1.09004 * 109.47108 * 23.89989 * 14 12 11 38 38 H 1.08998 * 109.47576 * 263.89245 * 14 12 11 39 39 H 1.09007 * 109.75136 * 181.39353 * 15 14 12 40 40 H 1.09002 * 109.79188 * 60.68176 * 15 14 12 41 41 H 0.97005 * 120.00527 * 354.22768 * 20 19 17 42 42 H 1.08988 * 108.71592 * 81.47585 * 25 16 15 43 43 H 1.09001 * 108.71026 * 199.50099 * 25 16 15 44 44 H 1.08001 * 119.77240 * 179.70237 * 28 7 6 45 45 H 1.07994 * 119.92508 * 180.25505 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6067 0.0015 6 6 4.6718 -1.5065 0.0019 7 6 4.4187 -2.8720 0.0024 8 6 5.5442 -3.8287 0.0034 9 8 5.3319 -5.0172 -0.1390 10 7 6.8065 -3.3840 0.1622 11 6 7.4356 -2.0547 0.3105 12 6 8.5616 -2.7983 1.0662 13 1 9.5714 -2.4512 0.8466 14 6 8.2560 -2.8714 2.5637 15 6 8.7443 -4.2120 3.1187 16 7 8.0583 -5.2822 2.3882 17 6 7.3149 -6.2071 3.0716 18 1 6.4337 -6.6347 2.6165 19 6 7.6938 -6.5951 4.3494 20 7 8.9490 -6.4776 4.7277 21 14 6.4224 -7.2840 5.5320 22 1 5.8173 -8.5087 4.9498 23 1 5.3623 -6.2704 5.7644 24 1 7.0770 -7.6198 6.8219 25 6 8.1697 -5.3682 0.9382 26 6 8.1267 -4.0190 0.2590 27 1 8.6244 -4.0582 -0.7099 28 6 3.0988 -3.3465 -0.0034 29 6 2.0515 -2.4747 0.0019 30 6 2.2845 -1.1011 0.0005 31 1 -0.3633 -0.0005 -1.0278 32 1 -0.3633 -0.8898 0.5141 33 1 -0.3634 0.8902 0.5134 34 1 5.6885 -1.1421 0.0010 35 1 6.8669 -1.3657 0.9349 36 1 7.7563 -1.6118 -0.6324 37 1 7.1807 -2.7835 2.7198 38 1 8.7657 -2.0573 3.0789 39 1 8.5068 -4.2797 4.1804 40 1 9.8214 -4.3003 2.9759 41 1 9.6241 -6.1995 4.0891 42 1 9.1095 -5.8602 0.6882 43 1 7.3481 -5.9765 0.5599 44 1 2.9113 -4.4101 -0.0078 45 1 1.0386 -2.8494 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084452716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:32 Heat of formation + Delta-G solvation = 133.268989 kcal Electronic energy + Delta-G solvation = -30082.656319 eV Core-core repulsion = 26103.815703 eV Total energy + Delta-G solvation = -3978.840616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24315 -42.03630 -39.73864 -38.05668 -37.38478 -35.80864 -33.80363 -32.66201 -32.29133 -31.57524 -29.97531 -28.62445 -28.41567 -25.92912 -25.38245 -25.01349 -23.87698 -22.95010 -22.10962 -21.54980 -19.78105 -19.33969 -18.72709 -18.30742 -17.83409 -17.27335 -17.10056 -16.80620 -16.18014 -16.06505 -15.84789 -15.48294 -15.31858 -15.15816 -14.92907 -14.43797 -14.35820 -14.11669 -13.94916 -13.83561 -13.57166 -13.52687 -13.25288 -13.09643 -12.89488 -12.79113 -12.60513 -12.46875 -12.04589 -11.94274 -11.91791 -11.76030 -11.75089 -11.48026 -11.12784 -10.67525 -10.49643 -10.12033 -9.68914 -9.45623 -8.87652 -8.23527 -5.45053 -0.73252 -0.28921 1.01504 1.03100 1.52684 1.59565 1.71305 1.76576 1.79956 2.61237 2.61589 2.80211 3.17159 3.21486 3.33906 3.40944 3.51208 3.56987 3.76499 3.86774 3.89056 4.04797 4.19139 4.27419 4.32355 4.34874 4.37816 4.46395 4.47450 4.59212 4.63034 4.65210 4.72843 4.78915 4.85487 4.95616 4.97267 5.01004 5.09034 5.14326 5.23322 5.26399 5.31463 5.54575 5.56552 5.88284 6.41587 6.73569 6.76818 7.12553 7.12812 7.80820 8.19509 8.97619 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013424 B = 0.003420 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.304494 B = 8185.064855 C = 9057.358124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.386 5.386 3 N -0.024 5.024 4 N -0.233 5.233 5 C -0.045 4.045 6 C -0.008 4.008 7 C -0.144 4.144 8 C 0.574 3.426 9 O -0.580 6.580 10 N -0.630 5.630 11 C 0.096 3.904 12 C -0.098 4.098 13 H 0.133 0.867 14 C -0.109 4.109 15 C 0.155 3.845 16 N -0.605 5.605 17 C -0.351 4.351 18 H 0.024 0.976 19 C -0.066 4.066 20 N -0.935 5.935 21 Si 1.109 2.891 22 H -0.281 1.281 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.144 3.856 26 C 0.125 3.875 27 H 0.114 0.886 28 C -0.032 4.032 29 C -0.107 4.107 30 C 0.097 3.903 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.169 0.831 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.039 0.961 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.018 0.982 41 H 0.256 0.744 42 H 0.013 0.987 43 H 0.036 0.964 44 H 0.146 0.854 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.537 16.878 -12.344 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.181 5.181 3 N -0.004 5.004 4 N -0.112 5.112 5 C -0.169 4.169 6 C -0.030 4.030 7 C -0.151 4.151 8 C 0.366 3.634 9 O -0.462 6.462 10 N -0.364 5.364 11 C -0.024 4.024 12 C -0.117 4.117 13 H 0.150 0.850 14 C -0.148 4.148 15 C 0.030 3.970 16 N -0.329 5.329 17 C -0.482 4.482 18 H 0.042 0.958 19 C -0.263 4.263 20 N -0.576 5.576 21 Si 0.933 3.067 22 H -0.207 1.207 23 H -0.210 1.210 24 H -0.208 1.208 25 C 0.018 3.982 26 C 0.021 3.979 27 H 0.131 0.869 28 C -0.054 4.054 29 C -0.129 4.129 30 C -0.026 4.026 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.186 0.814 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.164 0.836 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.161 17.228 -10.919 24.831 hybrid contribution 0.157 -1.149 -1.505 1.899 sum -14.004 16.079 -12.424 24.678 Atomic orbital electron populations 1.22558 0.69633 1.07274 1.06086 1.50473 1.09391 1.02306 1.55887 1.81521 0.94219 1.08668 1.15999 1.74818 1.11959 1.10713 1.13683 1.19973 0.94095 0.90200 1.12601 1.21324 0.99619 0.89780 0.92280 1.19704 0.94124 0.92573 1.08682 1.18034 0.82055 0.87346 0.75966 1.90752 1.84497 1.18505 1.52426 1.49841 1.04355 1.11667 1.70536 1.24105 0.91014 0.85524 1.01760 1.22874 1.00710 0.93913 0.94161 0.84951 1.21759 1.00254 0.97800 0.95028 1.20744 0.93531 0.87332 0.95427 1.43718 1.58809 1.29145 1.01264 1.19991 1.04823 1.21154 1.02187 0.95807 1.27090 1.00359 0.98721 1.00179 1.70892 1.00415 1.47437 1.38826 0.82945 0.73084 0.76082 0.74559 1.20732 1.20980 1.20819 1.20252 0.97916 0.95381 0.84661 1.22547 0.81223 0.94680 0.99467 0.86888 1.20995 0.90144 1.01335 0.92952 1.19971 1.01631 0.86809 1.04493 1.19717 0.90780 0.91368 1.00762 0.87873 0.86477 0.87058 0.81375 0.88375 0.84936 0.94180 0.89189 0.94123 0.96373 0.93445 0.96913 0.94573 0.83595 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.52 127.77 1.47 1.99 16 2 N -0.39 -6.91 4.11 -360.92 -1.48 -8.39 16 3 N -0.02 -0.57 13.72 37.02 0.51 -0.06 16 4 N -0.23 -6.19 12.40 -52.21 -0.65 -6.83 16 5 C -0.04 -1.13 7.26 39.57 0.29 -0.84 16 6 C -0.01 -0.19 9.19 22.80 0.21 0.02 16 7 C -0.14 -4.19 5.87 -20.13 -0.12 -4.31 16 8 C 0.57 21.02 7.90 86.75 0.69 21.71 16 9 O -0.58 -26.58 15.54 -3.92 -0.06 -26.64 16 10 N -0.63 -19.97 3.34 -825.78 -2.76 -22.74 16 11 C 0.10 2.00 5.93 86.34 0.51 2.51 16 12 C -0.10 -2.52 4.39 -10.31 -0.05 -2.56 16 13 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 14 C -0.11 -3.70 5.66 30.63 0.17 -3.53 16 15 C 0.15 7.17 4.71 86.39 0.41 7.58 16 16 N -0.60 -31.77 2.79 -707.17 -1.97 -33.74 16 17 C -0.35 -21.27 9.36 84.03 0.79 -20.48 16 18 H 0.02 1.56 7.93 -2.91 -0.02 1.54 16 19 C -0.07 -3.95 4.64 84.86 0.39 -3.55 16 20 N -0.93 -57.98 12.50 21.65 0.27 -57.71 16 21 Si 1.11 53.88 29.98 68.60 2.06 55.94 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 25 C 0.14 6.58 6.21 85.92 0.53 7.11 16 26 C 0.12 4.06 4.23 43.86 0.19 4.24 16 27 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 28 C -0.03 -0.80 9.51 22.30 0.21 -0.58 16 29 C -0.11 -1.97 9.97 22.07 0.22 -1.75 16 30 C 0.10 2.05 6.93 39.16 0.27 2.32 16 31 H 0.10 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.17 3.52 3.77 -2.91 -0.01 3.51 16 35 H 0.10 1.90 6.05 -2.39 -0.01 1.88 16 36 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.53 7.69 -2.38 -0.02 1.51 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 2.17 6.40 -2.38 -0.02 2.16 16 40 H 0.02 0.83 7.99 -2.39 -0.02 0.82 16 41 H 0.26 16.04 6.94 -92.70 -0.64 15.40 16 42 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.04 1.90 6.41 -2.39 -0.02 1.88 16 44 H 0.15 3.76 7.64 -2.91 -0.02 3.74 16 45 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -86.02 362.99 3.26 -82.76 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.16 Total: 7.52 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 6.19 Total: 9.89 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.08 Total: -129.47 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 2.06 Total: 55.94 kcal Total: -86.02 3.26 -82.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084452716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.031 kcal (2) G-P(sol) polarization free energy of solvation -86.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds