Wall clock time and date at job start Wed Apr 1 2020 01:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39804 * 125.33980 * 2 1 4 4 C 1.30200 * 110.13095 * 179.97438 * 3 2 1 5 5 C 1.45968 * 107.58758 * 0.26834 * 4 3 2 6 6 C 1.39654 * 134.11413 * 179.70703 * 5 4 3 7 7 C 1.39512 * 117.94940 * 180.02562 * 6 5 4 8 8 C 1.47686 * 120.40929 * 179.97438 * 7 6 5 9 9 O 1.21571 * 120.00394 * 6.73335 * 8 7 6 10 10 N 1.34775 * 119.99839 * 186.72936 * 8 7 6 11 11 C 1.47286 * 136.54435 * 5.61497 * 10 8 7 12 12 C 1.54084 * 87.60961 * 151.34465 * 11 10 8 13 13 H 1.09000 * 115.04706 * 141.62772 * 12 11 10 14 14 C 1.53070 * 111.39321 * 273.97667 * 12 11 10 15 15 C 1.52006 * 109.68923 * 142.51499 * 14 12 11 16 16 N 1.46541 * 108.10491 * 301.56158 * 15 14 12 17 17 C 1.36941 * 119.73802 * 236.29597 * 16 15 14 18 18 H 1.07997 * 119.99601 * 25.73173 * 17 16 15 19 19 C 1.38807 * 119.99893 * 205.72931 * 17 16 15 20 20 N 1.31616 * 120.00294 * 15.67702 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 195.67719 * 19 17 16 22 22 H 1.48507 * 109.47066 * 89.99996 * 21 19 17 23 23 H 1.48500 * 109.47232 * 209.99572 * 21 19 17 24 24 H 1.48497 * 109.47153 * 330.00318 * 21 19 17 25 25 C 1.45697 * 120.52517 * 56.32312 * 16 15 14 26 26 C 1.46473 * 136.54305 * 185.23462 * 10 8 7 27 27 H 1.08992 * 111.43674 * 96.40595 * 26 10 8 28 28 C 1.40182 * 119.17734 * 0.02562 * 7 6 5 29 29 N 1.31191 * 121.37756 * 359.56525 * 28 7 6 30 30 C 1.32926 * 121.84430 * 0.69071 * 29 28 7 31 31 H 1.09006 * 109.46865 * 90.02217 * 1 2 3 32 32 H 1.08998 * 109.46966 * 210.02349 * 1 2 3 33 33 H 1.09000 * 109.47208 * 330.02266 * 1 2 3 34 34 H 1.08002 * 126.20653 * 179.97438 * 4 3 2 35 35 H 1.08002 * 121.02969 * 0.05126 * 6 5 4 36 36 H 1.08998 * 113.52930 * 266.02885 * 11 10 8 37 37 H 1.09006 * 113.53203 * 36.66269 * 11 10 8 38 38 H 1.09000 * 109.51053 * 262.32278 * 14 12 11 39 39 H 1.09004 * 109.51300 * 22.47897 * 14 12 11 40 40 H 1.09002 * 109.87783 * 181.86046 * 15 14 12 41 41 H 1.08993 * 109.71628 * 61.16633 * 15 14 12 42 42 H 0.97004 * 119.99834 * 180.02562 * 20 19 17 43 43 H 1.08997 * 108.78788 * 199.09371 * 25 16 15 44 44 H 1.09001 * 108.70100 * 80.81578 * 25 16 15 45 45 H 1.08007 * 119.30959 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1404 0.0000 4 6 3.5301 0.7989 0.0005 5 6 3.5907 -0.6595 -0.0056 6 6 4.6328 -1.5892 -0.0130 7 6 4.3004 -2.9441 -0.0179 8 6 5.3592 -3.9736 -0.0264 9 8 6.5244 -3.6483 0.0943 10 7 5.0338 -5.2738 -0.1678 11 6 3.8082 -6.0465 -0.4328 12 6 4.7011 -7.1126 -1.0965 13 1 4.4047 -8.1446 -0.9088 14 6 4.9601 -6.7857 -2.5693 15 6 6.3870 -7.1619 -2.9340 16 7 7.2931 -6.4172 -2.0555 17 6 8.2588 -5.6133 -2.5998 18 1 8.1200 -5.1942 -3.5854 19 6 9.4160 -5.3371 -1.8848 20 7 9.7350 -6.0711 -0.8399 21 14 10.5208 -3.9237 -2.4057 22 1 10.0937 -2.6808 -1.7141 23 1 11.9267 -4.2343 -2.0421 24 1 10.4201 -3.7323 -3.8748 25 6 7.1750 -6.5258 -0.6073 26 6 5.7403 -6.5564 -0.1340 27 1 5.6677 -7.0254 0.8472 28 6 2.9488 -3.3162 -0.0157 29 7 1.9930 -2.4177 -0.0007 30 6 2.2553 -1.1146 -0.0005 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 4.3743 1.4724 0.0003 35 1 5.6643 -1.2692 -0.0145 36 1 3.3108 -6.3971 0.4715 37 1 3.1263 -5.5561 -1.1276 38 1 4.2695 -7.3514 -3.1946 39 1 4.8135 -5.7186 -2.7366 40 1 6.5851 -6.9001 -3.9734 41 1 6.5332 -8.2324 -2.7904 42 1 10.5435 -5.8778 -0.3400 43 1 7.6776 -5.6740 -0.1493 44 1 7.6709 -7.4409 -0.2839 45 1 2.6890 -4.3645 -0.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084740199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:31 Heat of formation + Delta-G solvation = 157.803517 kcal Electronic energy + Delta-G solvation = -30204.768279 eV Core-core repulsion = 26226.991560 eV Total energy + Delta-G solvation = -3977.776719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77071 -40.64871 -38.52773 -37.22264 -35.25362 -34.02264 -32.22380 -31.80003 -30.81300 -30.12314 -28.76885 -27.13071 -26.90114 -24.37872 -24.04156 -23.48755 -22.55327 -21.15322 -21.11434 -20.06239 -18.20326 -17.88051 -17.53352 -16.51818 -16.22637 -16.09043 -15.75554 -15.42159 -14.99101 -14.35892 -14.27894 -13.94990 -13.90115 -13.67464 -13.38804 -13.32297 -13.23861 -12.94865 -12.73101 -12.64872 -12.42606 -12.33815 -11.94158 -11.48359 -11.33877 -11.09521 -10.66371 -10.64162 -10.59257 -10.47125 -10.15387 -9.89795 -9.82425 -9.74183 -9.55699 -9.24465 -8.96963 -8.48833 -8.27490 -8.13356 -6.55777 -5.62637 -3.04242 0.58473 0.78892 1.88311 2.20383 3.12470 3.16576 3.50826 3.56511 3.59063 3.86941 3.91635 4.05509 4.38999 4.53904 4.61520 4.65283 4.76780 4.83651 4.93636 5.05044 5.15590 5.18956 5.21776 5.33537 5.38946 5.47477 5.52907 5.62230 5.70932 5.81868 5.88979 6.00490 6.12477 6.13798 6.27619 6.35646 6.39595 6.51597 6.54483 6.60938 6.80701 7.02213 7.15801 7.50464 7.64577 7.78678 7.96731 8.26652 8.60717 8.70006 9.38988 10.03310 10.50854 11.45701 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003706 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.330170 B = 7554.428942 C = 8996.042602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.396 5.396 3 N -0.245 5.245 4 C 0.097 3.903 5 C -0.237 4.237 6 C 0.068 3.932 7 C -0.215 4.215 8 C 0.592 3.408 9 O -0.506 6.506 10 N -0.629 5.629 11 C 0.082 3.918 12 C -0.110 4.110 13 H 0.094 0.906 14 C -0.115 4.115 15 C 0.148 3.852 16 N -0.584 5.584 17 C -0.251 4.251 18 H 0.061 0.939 19 C 0.013 3.987 20 N -0.904 5.904 21 Si 0.899 3.101 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.282 1.282 25 C 0.167 3.833 26 C 0.121 3.879 27 H 0.075 0.925 28 C 0.191 3.809 29 N -0.509 5.509 30 C 0.324 3.676 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.205 0.795 35 H 0.156 0.844 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.251 0.749 43 H 0.102 0.898 44 H 0.030 0.970 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.309 5.544 3.137 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.187 5.187 3 N -0.056 5.056 4 C -0.101 4.101 5 C -0.247 4.247 6 C 0.039 3.961 7 C -0.223 4.223 8 C 0.380 3.620 9 O -0.381 6.381 10 N -0.365 5.365 11 C -0.041 4.041 12 C -0.129 4.129 13 H 0.112 0.888 14 C -0.154 4.154 15 C 0.021 3.979 16 N -0.307 5.307 17 C -0.381 4.381 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.208 1.208 25 C 0.041 3.959 26 C 0.017 3.983 27 H 0.093 0.907 28 C 0.022 3.978 29 N -0.223 5.223 30 C 0.085 3.915 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.222 0.778 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.120 0.880 44 H 0.048 0.952 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -20.384 6.802 3.354 21.749 hybrid contribution 1.715 0.403 -0.096 1.765 sum -18.669 7.204 3.258 20.274 Atomic orbital electron populations 1.21807 0.73402 1.04376 1.03263 1.48064 1.06284 1.00053 1.64294 1.76710 1.02732 1.07386 1.18805 1.25147 0.94839 0.92660 0.97494 1.20457 0.94029 0.94750 1.15479 1.21239 0.99479 0.90072 0.85266 1.20834 0.95119 0.94567 1.11757 1.17118 0.87562 0.79920 0.77403 1.90895 1.18834 1.79672 1.48665 1.49260 1.11946 1.03988 1.71304 1.23541 0.89793 0.91521 0.99254 1.22701 0.96025 0.97716 0.96458 0.88774 1.21636 0.99754 1.01207 0.92800 1.20527 0.88394 0.94302 0.94681 1.43457 1.35705 1.51268 1.00236 1.19068 0.95328 1.21809 1.01847 0.92109 1.24896 0.96527 0.98680 0.98482 1.70014 1.25348 1.38238 1.21224 0.86343 0.79602 0.83249 0.77841 1.21265 1.21970 1.20763 1.20197 0.88151 1.02762 0.84803 1.22627 0.98246 0.79867 0.97564 0.90697 1.23443 0.87110 0.98786 0.88480 1.66721 1.37417 0.98423 1.19779 1.19139 0.88664 0.88229 0.95481 0.91103 0.89169 0.89459 0.77813 0.82671 0.89904 0.90534 0.92680 0.92064 0.92601 0.96326 0.93868 0.88023 0.95201 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.90 11.43 59.85 0.68 1.58 16 2 N -0.40 -4.82 4.03 -67.17 -0.27 -5.09 16 3 N -0.24 -2.96 12.39 31.87 0.39 -2.57 16 4 C 0.10 1.07 12.30 -15.15 -0.19 0.89 16 5 C -0.24 -3.20 6.36 -105.20 -0.67 -3.87 16 6 C 0.07 1.00 9.76 -38.58 -0.38 0.63 16 7 C -0.22 -3.38 5.89 -104.83 -0.62 -4.00 16 8 C 0.59 11.40 7.96 -12.40 -0.10 11.30 16 9 O -0.51 -12.24 15.60 5.30 0.08 -12.15 16 10 N -0.63 -10.78 3.31 -189.03 -0.63 -11.41 16 11 C 0.08 0.99 5.53 -11.54 -0.06 0.93 16 12 C -0.11 -1.56 4.58 -90.44 -0.41 -1.97 16 13 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 14 C -0.11 -1.83 5.61 -27.20 -0.15 -1.99 16 15 C 0.15 2.99 6.44 -4.53 -0.03 2.96 16 16 N -0.58 -14.68 3.02 -175.59 -0.53 -15.21 16 17 C -0.25 -7.13 9.51 -15.06 -0.14 -7.27 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 19 C 0.01 0.37 4.91 -17.43 -0.09 0.29 16 20 N -0.90 -27.18 11.05 55.49 0.61 -26.56 16 21 Si 0.90 23.19 29.58 -169.99 -5.03 18.16 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 25 C 0.17 4.04 4.56 -5.43 -0.02 4.01 16 26 C 0.12 2.18 4.04 -77.81 -0.31 1.87 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 C 0.19 2.56 10.31 -17.10 -0.18 2.39 16 29 N -0.51 -6.98 10.37 -12.02 -0.12 -7.10 16 30 C 0.32 4.48 7.96 -156.09 -1.24 3.24 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.21 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.16 2.23 7.74 -52.49 -0.41 1.83 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.82 6.63 -51.93 -0.34 0.47 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.09 7.68 -51.93 -0.40 0.69 16 40 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.10 2.90 5.01 -51.93 -0.26 2.64 16 44 H 0.03 0.78 7.99 -51.93 -0.41 0.37 16 45 H 0.18 1.94 4.19 -52.48 -0.22 1.72 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -36.39 364.26 -9.71 -46.10 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.80 Total: -0.64 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -3.91 Total: 10.97 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.54 Total: -67.94 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.03 Total: 18.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.39 -9.71 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084740199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.905 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds