Wall clock time and date at job start Wed Apr 1 2020 01:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28812 * 125.94133 * 2 1 4 4 N 1.28639 * 111.79333 * 180.02562 * 3 2 1 5 5 C 1.34750 * 109.29184 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.58725 * 179.97438 * 5 4 3 7 7 C 1.36163 * 119.97652 * 179.70052 * 6 5 4 8 8 C 1.40255 * 120.55097 * 0.61664 * 7 6 5 9 9 C 1.47726 * 119.87949 * 179.68106 * 8 7 6 10 10 O 1.21563 * 119.99645 * 359.62214 * 9 8 7 11 11 N 1.34778 * 119.99859 * 179.89265 * 9 8 7 12 12 C 1.47289 * 136.54444 * 5.01017 * 11 9 8 13 13 C 1.54356 * 87.49996 * 151.47524 * 12 11 9 14 14 H 1.08999 * 115.79020 * 141.80803 * 13 12 11 15 15 C 1.53062 * 111.57661 * 274.16764 * 13 12 11 16 16 C 1.53147 * 109.21668 * 142.38043 * 15 13 12 17 17 N 1.46541 * 108.24989 * 301.59482 * 16 15 13 18 18 C 1.36937 * 119.73570 * 236.39276 * 17 16 15 19 19 H 1.08007 * 119.99649 * 153.93793 * 18 17 16 20 20 C 1.38808 * 120.00219 * 333.94174 * 18 17 16 21 21 N 1.31616 * 120.00153 * 150.87184 * 20 18 17 22 22 Si 1.86796 * 119.99877 * 330.86252 * 20 18 17 23 23 H 1.48508 * 109.47040 * 95.29004 * 22 20 18 24 24 H 1.48504 * 109.47528 * 215.28966 * 22 20 18 25 25 H 1.48500 * 109.47603 * 335.29535 * 22 20 18 26 26 C 1.45696 * 120.52357 * 56.42151 * 17 16 15 27 27 C 1.46467 * 136.54006 * 185.38580 * 11 9 8 28 28 H 1.08993 * 111.44251 * 97.06034 * 27 11 9 29 29 C 1.39163 * 120.24461 * 359.41326 * 8 7 6 30 30 C 1.37366 * 125.94384 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46911 * 269.99421 * 1 2 3 32 32 H 1.08998 * 109.47742 * 29.99625 * 1 2 3 33 33 H 1.09006 * 109.46785 * 149.99564 * 1 2 3 34 34 H 1.08002 * 120.01389 * 0.04305 * 6 5 4 35 35 H 1.07993 * 119.72716 * 180.30587 * 7 6 5 36 36 H 1.08999 * 113.52597 * 266.10047 * 12 11 9 37 37 H 1.08989 * 113.53015 * 36.73535 * 12 11 9 38 38 H 1.09007 * 109.51426 * 22.46042 * 15 13 12 39 39 H 1.08998 * 109.56218 * 262.33176 * 15 13 12 40 40 H 1.08999 * 109.70655 * 181.90340 * 16 15 13 41 41 H 1.08998 * 109.73833 * 61.30476 * 16 15 13 42 42 H 0.97000 * 120.00136 * 179.97438 * 21 20 18 43 43 H 1.09002 * 108.79107 * 199.11027 * 26 17 16 44 44 H 1.08995 * 108.79222 * 80.89015 * 26 17 16 45 45 H 1.07998 * 120.25027 * 180.24786 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4684 0.7285 -0.0005 5 6 3.5892 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4458 -2.8456 0.0026 8 6 3.1371 -3.3502 -0.0034 9 6 2.9113 -4.8101 -0.0045 10 8 3.8588 -5.5716 -0.0072 11 7 1.6548 -5.2976 -0.0081 12 6 0.2932 -4.7434 -0.1002 13 6 -0.1339 -6.0790 -0.7454 14 1 -1.1165 -6.4522 -0.4569 15 6 0.1076 -6.0765 -2.2569 16 6 0.5866 -7.4642 -2.6931 17 7 1.8116 -7.7804 -1.9536 18 6 2.9555 -8.0952 -2.6373 19 1 3.9205 -7.9207 -2.1845 20 6 2.8750 -8.6384 -3.9121 21 7 3.8407 -8.4252 -4.7805 22 14 1.3961 -9.6724 -4.3950 23 1 0.3991 -8.8171 -5.0877 24 1 1.8302 -10.7628 -5.3049 25 1 0.7831 -10.2592 -3.1763 26 6 1.8218 -7.7630 -0.4968 27 6 1.0262 -6.6172 0.0843 28 1 0.7057 -6.8355 1.1029 29 6 2.0506 -2.4806 -0.0028 30 6 2.2713 -1.1121 -0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5139 34 1 5.6810 -1.1235 -0.0026 35 1 5.2827 -3.5280 0.0066 36 1 -0.1690 -4.5616 0.8701 37 1 0.2157 -3.8891 -0.7724 38 1 0.8678 -5.3350 -2.5029 39 1 -0.8201 -5.8323 -2.7743 40 1 0.7934 -7.4621 -3.7633 41 1 -0.1801 -8.2057 -2.4684 42 1 3.7847 -8.8052 -5.6712 43 1 2.8534 -7.6834 -0.1538 44 1 1.4042 -8.7011 -0.1315 45 1 1.0429 -2.8691 -0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084800611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:35 Heat of formation + Delta-G solvation = 177.724210 kcal Electronic energy + Delta-G solvation = -30337.988312 eV Core-core repulsion = 26361.075418 eV Total energy + Delta-G solvation = -3976.912893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.38299 -41.03418 -38.72815 -37.07412 -35.66775 -35.13429 -32.12974 -31.27798 -31.17997 -30.86912 -29.07474 -28.09850 -27.40239 -24.76600 -24.06263 -23.70723 -23.06468 -21.60258 -21.13623 -20.54824 -18.55552 -17.94614 -17.50801 -17.13159 -16.96450 -16.45950 -15.84625 -15.54013 -15.13619 -15.01057 -14.50516 -14.11655 -14.04874 -13.80135 -13.63514 -13.60441 -13.41469 -12.94343 -12.87549 -12.60857 -12.31168 -12.27195 -12.08927 -11.92036 -11.87327 -11.52488 -11.19170 -11.03898 -10.96259 -10.90595 -10.64638 -10.33833 -10.00866 -9.75065 -9.45977 -9.37646 -9.13587 -8.63035 -8.56456 -8.37034 -6.94880 -5.91265 -3.18345 0.15096 1.03373 1.87344 1.93699 2.86495 2.95629 3.34331 3.51927 3.55703 3.67971 3.70909 4.10187 4.25651 4.32594 4.39680 4.54913 4.58715 4.73189 4.82868 4.85389 4.89415 4.92024 4.99684 5.14612 5.18416 5.21180 5.33287 5.47933 5.53320 5.61610 5.71161 5.74394 5.76036 5.91006 5.99258 6.10739 6.17490 6.21759 6.24282 6.30824 6.44742 6.57516 6.67490 6.76546 6.90693 7.91899 8.05914 8.07605 8.38029 8.43728 9.05283 9.80754 10.13155 11.24369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003390 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.751656 B = 8256.864476 C = 8758.613411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.319 5.319 3 N -0.020 5.020 4 N -0.257 5.257 5 C 0.025 3.975 6 C -0.058 4.058 7 C -0.065 4.065 8 C -0.079 4.079 9 C 0.588 3.412 10 O -0.506 6.506 11 N -0.627 5.627 12 C 0.086 3.914 13 C -0.111 4.111 14 H 0.098 0.902 15 C -0.118 4.118 16 C 0.133 3.867 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.086 0.914 20 C 0.027 3.973 21 N -0.896 5.896 22 Si 0.863 3.137 23 H -0.290 1.290 24 H -0.302 1.302 25 H -0.272 1.272 26 C 0.143 3.857 27 C 0.128 3.872 28 H 0.083 0.917 29 C -0.082 4.082 30 C 0.014 3.986 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.080 0.920 44 H 0.024 0.976 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 14.743 12.466 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.120 5.120 3 N -0.001 5.001 4 N -0.132 5.132 5 C -0.101 4.101 6 C -0.080 4.080 7 C -0.087 4.087 8 C -0.086 4.086 9 C 0.377 3.623 10 O -0.381 6.381 11 N -0.363 5.363 12 C -0.037 4.037 13 C -0.130 4.130 14 H 0.116 0.884 15 C -0.157 4.157 16 C 0.007 3.993 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.103 0.897 20 C -0.172 4.172 21 N -0.538 5.538 22 Si 0.693 3.307 23 H -0.218 1.218 24 H -0.230 1.230 25 H -0.197 1.197 26 C 0.016 3.984 27 C 0.024 3.976 28 H 0.101 0.899 29 C -0.104 4.104 30 C -0.104 4.104 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.042 0.958 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.266 15.918 12.327 23.071 hybrid contribution -1.200 -1.568 -0.383 2.011 sum -12.466 14.349 11.945 22.449 Atomic orbital electron populations 1.22249 0.72137 1.06065 1.04940 1.47074 1.08727 1.03023 1.53174 1.77961 0.96975 1.12366 1.12815 1.75343 1.07513 1.11415 1.18913 1.20094 0.93341 0.91119 1.05508 1.19972 0.97611 0.90935 0.99470 1.20930 0.96622 0.94811 0.96314 1.19937 0.93537 0.93046 1.02123 1.17363 0.81015 0.86778 0.77152 1.90850 1.39969 1.58656 1.48615 1.49233 1.03523 1.10886 1.72670 1.23592 0.81825 0.98143 1.00158 1.22870 0.98142 0.94982 0.96984 0.88434 1.21864 1.00451 1.01264 0.92120 1.21131 0.88589 0.92319 0.97277 1.43783 1.08551 1.79393 0.99835 1.18935 0.85592 1.35727 0.98085 0.89652 1.25189 0.96292 0.99772 0.95975 1.69986 1.34796 1.44525 1.04541 0.87165 0.83808 0.81897 0.77864 1.21787 1.23009 1.19718 1.20293 1.00097 0.92810 0.85163 1.22384 0.90842 0.85831 0.98538 0.89939 1.20793 1.00749 0.88277 1.00599 1.19614 0.91036 0.90759 1.08982 0.89131 0.87784 0.88374 0.83707 0.82964 0.89756 0.90269 0.91384 0.92230 0.90604 0.95843 0.92942 0.90200 0.95815 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.40 59.85 0.68 1.08 16 2 N -0.32 -3.29 3.80 -65.54 -0.25 -3.54 16 3 N -0.02 -0.26 13.07 60.35 0.79 0.53 16 4 N -0.26 -3.70 12.42 32.09 0.40 -3.30 16 5 C 0.02 0.34 7.36 -84.95 -0.62 -0.29 16 6 C -0.06 -0.71 10.03 -39.70 -0.40 -1.11 16 7 C -0.07 -0.88 9.51 -39.57 -0.38 -1.25 16 8 C -0.08 -1.12 5.88 -104.92 -0.62 -1.74 16 9 C 0.59 10.07 7.97 -12.38 -0.10 9.97 16 10 O -0.51 -10.86 15.49 5.31 0.08 -10.77 16 11 N -0.63 -9.23 3.31 -188.68 -0.62 -9.86 16 12 C 0.09 0.84 5.81 -11.39 -0.07 0.78 16 13 C -0.11 -1.35 4.57 -90.16 -0.41 -1.76 16 14 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.12 -1.85 5.71 -26.62 -0.15 -2.00 16 16 C 0.13 2.76 4.26 -3.94 -0.02 2.74 16 17 N -0.59 -13.98 2.78 -174.89 -0.49 -14.47 16 18 C -0.26 -7.30 9.89 -15.06 -0.15 -7.45 16 19 H 0.09 2.72 7.99 -52.48 -0.42 2.31 16 20 C 0.03 0.78 5.02 -17.43 -0.09 0.69 16 21 N -0.90 -27.87 13.97 55.49 0.78 -27.10 16 22 Si 0.86 21.94 24.71 -169.99 -4.20 17.74 16 23 H -0.29 -7.05 6.70 56.52 0.38 -6.67 16 24 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.14 2.84 6.12 -5.43 -0.03 2.81 16 27 C 0.13 1.89 4.04 -77.67 -0.31 1.58 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 C -0.08 -0.94 9.32 -39.10 -0.36 -1.31 16 30 C 0.01 0.17 6.94 -84.23 -0.58 -0.41 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.15 2.03 7.62 -52.49 -0.40 1.63 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.68 6.19 -51.94 -0.32 0.36 16 38 H 0.07 1.22 7.69 -51.92 -0.40 0.82 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.78 4.65 -51.93 -0.24 1.54 16 41 H 0.02 0.47 7.63 -51.93 -0.40 0.07 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.08 1.80 6.42 -51.93 -0.33 1.47 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.15 1.30 3.71 -52.49 -0.19 1.11 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -37.35 357.69 -7.41 -44.75 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.67 Total: -1.70 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -3.61 Total: 2.33 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.60 Total: -57.73 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.20 Total: 17.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.35 -7.41 -44.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084800611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.476 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds