Wall clock time and date at job start Wed Apr 1 2020 01:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28812 * 125.94133 * 2 1 4 4 N 1.28639 * 111.79333 * 180.02562 * 3 2 1 5 5 C 1.34750 * 109.29184 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.58725 * 179.97438 * 5 4 3 7 7 C 1.36163 * 119.97652 * 179.70052 * 6 5 4 8 8 C 1.40255 * 120.55097 * 0.61664 * 7 6 5 9 9 C 1.47726 * 119.87949 * 179.68106 * 8 7 6 10 10 O 1.21563 * 119.99645 * 359.62214 * 9 8 7 11 11 N 1.34778 * 119.99859 * 179.89265 * 9 8 7 12 12 C 1.47289 * 136.54444 * 5.01017 * 11 9 8 13 13 C 1.54356 * 87.49996 * 151.47524 * 12 11 9 14 14 H 1.08999 * 115.79020 * 141.80803 * 13 12 11 15 15 C 1.53062 * 111.57661 * 274.16764 * 13 12 11 16 16 C 1.53147 * 109.21668 * 142.38043 * 15 13 12 17 17 N 1.46541 * 108.24989 * 301.59482 * 16 15 13 18 18 C 1.36937 * 119.73570 * 236.39276 * 17 16 15 19 19 H 1.08007 * 119.99649 * 153.93793 * 18 17 16 20 20 C 1.38808 * 120.00219 * 333.94174 * 18 17 16 21 21 N 1.31616 * 120.00153 * 150.87184 * 20 18 17 22 22 Si 1.86796 * 119.99877 * 330.86252 * 20 18 17 23 23 H 1.48508 * 109.47040 * 95.29004 * 22 20 18 24 24 H 1.48504 * 109.47528 * 215.28966 * 22 20 18 25 25 H 1.48500 * 109.47603 * 335.29535 * 22 20 18 26 26 C 1.45696 * 120.52357 * 56.42151 * 17 16 15 27 27 C 1.46467 * 136.54006 * 185.38580 * 11 9 8 28 28 H 1.08993 * 111.44251 * 97.06034 * 27 11 9 29 29 C 1.39163 * 120.24461 * 359.41326 * 8 7 6 30 30 C 1.37366 * 125.94384 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46911 * 269.99421 * 1 2 3 32 32 H 1.08998 * 109.47742 * 29.99625 * 1 2 3 33 33 H 1.09006 * 109.46785 * 149.99564 * 1 2 3 34 34 H 1.08002 * 120.01389 * 0.04305 * 6 5 4 35 35 H 1.07993 * 119.72716 * 180.30587 * 7 6 5 36 36 H 1.08999 * 113.52597 * 266.10047 * 12 11 9 37 37 H 1.08989 * 113.53015 * 36.73535 * 12 11 9 38 38 H 1.09007 * 109.51426 * 22.46042 * 15 13 12 39 39 H 1.08998 * 109.56218 * 262.33176 * 15 13 12 40 40 H 1.08999 * 109.70655 * 181.90340 * 16 15 13 41 41 H 1.08998 * 109.73833 * 61.30476 * 16 15 13 42 42 H 0.97000 * 120.00136 * 179.97438 * 21 20 18 43 43 H 1.09002 * 108.79107 * 199.11027 * 26 17 16 44 44 H 1.08995 * 108.79222 * 80.89015 * 26 17 16 45 45 H 1.07998 * 120.25027 * 180.24786 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4684 0.7285 -0.0005 5 6 3.5892 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4458 -2.8456 0.0026 8 6 3.1371 -3.3502 -0.0034 9 6 2.9113 -4.8101 -0.0045 10 8 3.8588 -5.5716 -0.0072 11 7 1.6548 -5.2976 -0.0081 12 6 0.2932 -4.7434 -0.1002 13 6 -0.1339 -6.0790 -0.7454 14 1 -1.1165 -6.4522 -0.4569 15 6 0.1076 -6.0765 -2.2569 16 6 0.5866 -7.4642 -2.6931 17 7 1.8116 -7.7804 -1.9536 18 6 2.9555 -8.0952 -2.6373 19 1 3.9205 -7.9207 -2.1845 20 6 2.8750 -8.6384 -3.9121 21 7 3.8407 -8.4252 -4.7805 22 14 1.3961 -9.6724 -4.3950 23 1 0.3991 -8.8171 -5.0877 24 1 1.8302 -10.7628 -5.3049 25 1 0.7831 -10.2592 -3.1763 26 6 1.8218 -7.7630 -0.4968 27 6 1.0262 -6.6172 0.0843 28 1 0.7057 -6.8355 1.1029 29 6 2.0506 -2.4806 -0.0028 30 6 2.2713 -1.1121 -0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5139 34 1 5.6810 -1.1235 -0.0026 35 1 5.2827 -3.5280 0.0066 36 1 -0.1690 -4.5616 0.8701 37 1 0.2157 -3.8891 -0.7724 38 1 0.8678 -5.3350 -2.5029 39 1 -0.8201 -5.8323 -2.7743 40 1 0.7934 -7.4621 -3.7633 41 1 -0.1801 -8.2057 -2.4684 42 1 3.7847 -8.8052 -5.6712 43 1 2.8534 -7.6834 -0.1538 44 1 1.4042 -8.7011 -0.1315 45 1 1.0429 -2.8691 -0.0034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084800611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:34 Heat of formation + Delta-G solvation = 148.863859 kcal Electronic energy + Delta-G solvation = -30339.239790 eV Core-core repulsion = 26361.075418 eV Total energy + Delta-G solvation = -3978.164372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.29980 -42.15650 -39.87830 -38.24659 -37.32678 -35.95754 -33.98268 -32.75348 -32.37427 -31.86108 -30.27827 -28.88228 -28.71448 -25.87212 -25.45914 -25.07724 -24.20089 -22.95304 -22.13024 -21.68339 -19.69811 -19.15364 -18.75535 -18.33949 -17.81708 -17.78084 -17.17631 -17.02808 -16.66867 -15.92456 -15.70990 -15.45420 -15.29860 -15.16005 -14.90627 -14.38966 -14.32785 -14.25680 -14.07777 -13.82445 -13.74303 -13.43473 -13.24466 -13.11407 -12.91589 -12.83102 -12.61805 -12.56851 -12.26890 -12.10045 -11.86757 -11.82843 -11.59171 -11.39447 -11.12969 -10.70029 -10.62980 -10.16647 -9.63168 -9.45258 -8.89086 -8.17052 -5.40240 -0.81881 0.04154 0.97130 1.17159 1.29960 1.42740 1.53589 1.79782 1.84499 2.43379 2.63291 2.78133 2.99874 3.30084 3.31150 3.41563 3.46403 3.53289 3.83450 3.87522 3.95058 4.11505 4.19335 4.29728 4.34112 4.34683 4.43805 4.50997 4.53312 4.59955 4.63842 4.68946 4.72657 4.80541 4.87001 4.95212 5.00353 5.04035 5.07311 5.15592 5.24790 5.30194 5.39798 5.50433 5.59692 5.91835 6.14656 6.80803 6.99515 7.13671 7.17525 7.71848 8.02342 9.03778 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.003390 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.751656 B = 8256.864476 C = 8758.613411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.298 5.298 3 N -0.027 5.027 4 N -0.292 5.292 5 C 0.009 3.991 6 C -0.060 4.060 7 C -0.077 4.077 8 C -0.104 4.104 9 C 0.577 3.423 10 O -0.576 6.576 11 N -0.636 5.636 12 C 0.094 3.906 13 C -0.098 4.098 14 H 0.150 0.850 15 C -0.112 4.112 16 C 0.122 3.878 17 N -0.606 5.606 18 C -0.249 4.249 19 H 0.023 0.977 20 C -0.035 4.035 21 N -0.954 5.954 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.312 1.312 25 H -0.259 1.259 26 C 0.139 3.861 27 C 0.116 3.884 28 H 0.126 0.874 29 C -0.050 4.050 30 C 0.007 3.993 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.099 0.901 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.596 16.149 13.879 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.100 5.100 3 N -0.007 5.007 4 N -0.166 5.166 5 C -0.117 4.117 6 C -0.082 4.082 7 C -0.099 4.099 8 C -0.111 4.111 9 C 0.368 3.632 10 O -0.456 6.456 11 N -0.371 5.371 12 C -0.026 4.026 13 C -0.116 4.116 14 H 0.167 0.833 15 C -0.151 4.151 16 C -0.002 4.002 17 N -0.330 5.330 18 C -0.379 4.379 19 H 0.041 0.959 20 C -0.230 4.230 21 N -0.600 5.600 22 Si 0.775 3.225 23 H -0.192 1.192 24 H -0.241 1.241 25 H -0.183 1.183 26 C 0.013 3.987 27 C 0.012 3.988 28 H 0.144 0.856 29 C -0.072 4.072 30 C -0.112 4.112 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.177 0.823 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.897 17.375 13.779 28.497 hybrid contribution 0.806 -1.939 -0.782 2.241 sum -17.091 15.436 12.997 26.444 Atomic orbital electron populations 1.22916 0.68534 1.08307 1.07390 1.47578 1.10482 1.01622 1.50352 1.77879 0.96916 1.13236 1.12718 1.75321 1.08522 1.11879 1.20864 1.20356 0.94575 0.91229 1.05568 1.20035 0.98491 0.90296 0.99341 1.20876 0.96630 0.95120 0.97253 1.19780 0.94576 0.91888 1.04873 1.17851 0.81321 0.87608 0.76395 1.90818 1.42367 1.60371 1.52062 1.49452 1.04565 1.11927 1.71108 1.23960 0.78029 0.97450 1.03137 1.22882 0.98936 0.96162 0.93668 0.83288 1.21762 1.01105 0.96594 0.95644 1.21275 0.87525 0.96224 0.95208 1.43840 1.07929 1.79884 1.01388 1.18679 0.85658 1.35225 0.98305 0.95910 1.25879 1.00312 1.00952 0.95841 1.70136 1.38235 1.46428 1.05171 0.85830 0.79916 0.79108 0.77682 1.19242 1.24072 1.18322 1.20368 0.98936 0.96157 0.83192 1.22665 0.91125 0.83907 1.01092 0.85612 1.20905 1.01205 0.87382 0.97661 1.19670 0.90828 0.91366 1.09316 0.86483 0.86271 0.85592 0.82308 0.84535 0.84296 0.88305 0.94441 0.88109 0.93971 0.93627 0.93053 0.94786 0.94762 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 11.40 127.77 1.46 1.71 16 2 N -0.30 -5.10 3.80 -361.26 -1.37 -6.47 16 3 N -0.03 -0.63 13.07 37.02 0.48 -0.14 16 4 N -0.29 -8.25 12.42 -52.39 -0.65 -8.90 16 5 C 0.01 0.24 7.36 39.75 0.29 0.54 16 6 C -0.06 -1.54 10.03 22.19 0.22 -1.32 16 7 C -0.08 -2.23 9.51 22.28 0.21 -2.02 16 8 C -0.10 -2.97 5.88 -20.06 -0.12 -3.09 16 9 C 0.58 20.42 7.97 86.75 0.69 21.11 16 10 O -0.58 -27.29 15.49 -3.91 -0.06 -27.35 16 11 N -0.64 -17.25 3.31 -869.14 -2.88 -20.13 16 12 C 0.09 1.21 5.81 81.19 0.47 1.68 16 13 C -0.10 -1.75 4.57 -10.50 -0.05 -1.80 16 14 H 0.15 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.11 -3.05 5.71 30.66 0.17 -2.87 16 16 C 0.12 4.81 4.26 86.42 0.37 5.17 16 17 N -0.61 -29.12 2.78 -707.24 -1.96 -31.08 16 18 C -0.25 -15.23 9.89 84.03 0.83 -14.40 16 19 H 0.02 1.64 7.99 -2.91 -0.02 1.62 16 20 C -0.04 -2.15 5.02 84.86 0.43 -1.72 16 21 N -0.95 -63.04 13.97 21.65 0.30 -62.74 16 22 Si 0.95 46.68 24.71 68.60 1.70 48.37 16 23 H -0.27 -11.99 6.70 99.48 0.67 -11.33 16 24 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.14 5.59 6.12 85.91 0.53 6.12 16 27 C 0.12 3.03 4.04 38.70 0.16 3.18 16 28 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 29 C -0.05 -1.00 9.32 22.58 0.21 -0.79 16 30 C 0.01 0.16 6.94 39.02 0.27 0.43 16 31 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.13 -0.16 8.14 -2.38 -0.02 -0.18 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.14 4.26 7.62 -2.91 -0.02 4.24 16 36 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 0.95 6.19 -2.39 -0.01 0.94 16 38 H 0.04 1.25 7.69 -2.38 -0.02 1.23 16 39 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.93 4.65 -2.39 -0.01 1.92 16 41 H 0.05 1.61 7.63 -2.39 -0.02 1.59 16 42 H 0.26 16.19 8.31 -92.71 -0.77 15.41 16 43 H 0.03 1.66 6.42 -2.39 -0.02 1.64 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.18 2.13 3.71 -2.91 -0.01 2.12 16 Total: -1.00 -95.60 357.69 2.70 -92.90 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.00 Total: 3.60 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.14 Total: 11.94 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -6.08 Total: -129.47 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.70 Total: 48.37 kcal Total: -95.60 2.70 -92.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084800611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.765 kcal (2) G-P(sol) polarization free energy of solvation -95.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds