Wall clock time and date at job start Wed Apr 1 2020 01:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40253 * 126.66661 * 2 1 4 4 N 1.28654 * 109.42416 * 179.97438 * 3 2 1 5 5 C 1.35403 * 110.10628 * 0.02562 * 4 3 2 6 6 C 1.40114 * 133.02911 * 180.02562 * 5 4 3 7 7 C 1.37604 * 120.15359 * 180.02562 * 6 5 4 8 8 C 1.38489 * 120.79840 * 359.97438 * 7 6 5 9 9 C 1.39209 * 120.27373 * 359.97438 * 8 7 6 10 10 C 1.47532 * 120.24419 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99918 * 227.35384 * 10 9 8 12 12 N 1.34772 * 119.99718 * 47.35156 * 10 9 8 13 13 C 1.47811 * 135.01614 * 355.37530 * 12 10 9 14 14 C 1.54655 * 85.79087 * 153.78788 * 13 12 10 15 15 H 1.09002 * 115.01152 * 139.91821 * 14 13 12 16 16 C 1.53010 * 110.84023 * 270.23091 * 14 13 12 17 17 C 1.53097 * 109.44863 * 143.89311 * 16 14 13 18 18 N 1.46620 * 108.00864 * 301.02491 * 17 16 14 19 19 C 1.36937 * 119.89121 * 237.31844 * 18 17 16 20 20 H 1.07997 * 119.99428 * 153.93033 * 19 18 17 21 21 C 1.38812 * 120.00154 * 333.93948 * 19 18 17 22 22 N 1.31611 * 120.00040 * 152.81531 * 21 19 18 23 23 Si 1.86797 * 119.99765 * 332.81587 * 21 19 18 24 24 H 1.48505 * 109.47193 * 95.35302 * 23 21 19 25 25 H 1.48500 * 109.47516 * 335.34929 * 23 21 19 26 26 H 1.48503 * 109.46846 * 215.35043 * 23 21 19 27 27 C 1.45683 * 120.21716 * 57.59839 * 18 17 16 28 28 C 1.46827 * 135.01259 * 175.34941 * 12 10 9 29 29 H 1.09002 * 111.56088 * 94.50166 * 28 12 10 30 30 C 1.36979 * 126.65979 * 180.25477 * 2 1 3 31 31 H 1.08998 * 109.47298 * 98.07622 * 1 2 3 32 32 H 1.08998 * 109.47358 * 218.08260 * 1 2 3 33 33 H 1.09002 * 109.47084 * 338.07980 * 1 2 3 34 34 H 1.08007 * 119.92830 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.59800 * 179.97438 * 7 6 5 36 36 H 1.07994 * 119.85863 * 180.02562 * 8 7 6 37 37 H 1.08999 * 113.81597 * 39.57435 * 13 12 10 38 38 H 1.08995 * 113.82635 * 268.00574 * 13 12 10 39 39 H 1.09005 * 109.47284 * 23.90435 * 16 14 13 40 40 H 1.08996 * 109.47767 * 263.88869 * 16 14 13 41 41 H 1.08994 * 109.75673 * 181.39624 * 17 16 14 42 42 H 1.09005 * 109.79708 * 60.67470 * 17 16 14 43 43 H 0.96998 * 120.00264 * 179.97438 * 22 21 19 44 44 H 1.08998 * 108.71451 * 81.47348 * 27 18 17 45 45 H 1.09003 * 108.71409 * 199.49466 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5313 0.7436 0.0005 5 6 3.5989 -0.6087 0.0004 6 6 4.6696 -1.5124 0.0012 7 6 4.4304 -2.8675 0.0002 8 6 3.1357 -3.3590 -0.0011 9 6 2.0529 -2.4841 -0.0009 10 6 0.6739 -3.0083 -0.0029 11 8 -0.1472 -2.5565 -0.7775 12 7 0.3243 -3.9881 0.8540 13 6 1.0433 -4.8157 1.8454 14 6 -0.3200 -4.9343 2.5659 15 1 -0.5402 -5.9198 2.9762 16 6 -0.5020 -3.8001 3.5766 17 6 -1.9704 -3.3674 3.5983 18 7 -2.3347 -2.9318 2.2466 19 6 -2.8208 -1.6677 2.0447 20 1 -2.6990 -1.1894 1.0841 21 6 -3.4698 -1.0009 3.0747 22 7 -3.4649 0.3146 3.1131 23 14 -4.3502 -1.9709 4.4064 24 1 -3.4471 -2.1427 5.5727 25 1 -4.7335 -3.3041 3.8764 26 1 -5.5701 -1.2368 4.8289 27 6 -2.1869 -3.8416 1.1183 28 6 -0.9288 -4.6756 1.1900 29 1 -1.0442 -5.5986 0.6216 30 6 2.2829 -1.0988 -0.0049 31 1 -0.3634 -0.1444 -1.0174 32 1 -0.3634 -0.8089 0.6338 33 1 -0.3633 0.9534 0.3836 34 1 5.6852 -1.1447 0.0026 35 1 5.2625 -3.5561 0.0004 36 1 2.9654 -4.4254 -0.0015 37 1 1.7952 -4.2681 2.4134 38 1 1.4134 -5.7597 1.4454 39 1 0.1220 -2.9537 3.2893 40 1 -0.2105 -4.1465 4.5681 41 1 -2.1012 -2.5427 4.2989 42 1 -2.5983 -4.2070 3.8966 43 1 -3.9188 0.7806 3.8327 44 1 -3.0505 -4.5061 1.0895 45 1 -2.1675 -3.2575 0.1983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084874852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:38 Heat of formation + Delta-G solvation = 157.951097 kcal Electronic energy + Delta-G solvation = -31362.248265 eV Core-core repulsion = 27384.477945 eV Total energy + Delta-G solvation = -3977.770320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06240 -40.75646 -38.32313 -37.19451 -35.65902 -34.29247 -32.12215 -31.28543 -31.16289 -30.29130 -29.01296 -27.35086 -27.10097 -24.57277 -23.89187 -23.49216 -22.61761 -21.94290 -21.32256 -19.86701 -18.33378 -17.73770 -17.15313 -16.91586 -16.36120 -16.05020 -15.70412 -15.53405 -15.47087 -15.23407 -14.49280 -13.98408 -13.76406 -13.53865 -13.51892 -13.10732 -12.94910 -12.80338 -12.57334 -12.43338 -12.35268 -12.15624 -11.98204 -11.92678 -11.61449 -11.53710 -11.23886 -11.04392 -10.91060 -10.77170 -10.50530 -10.39708 -10.10027 -9.81688 -9.53935 -9.38099 -8.94333 -8.70901 -8.46961 -8.27107 -7.04990 -6.02596 -3.31764 0.26328 1.22252 2.06608 2.30258 2.79574 2.93111 3.27832 3.45947 3.48731 3.54137 4.02905 4.32168 4.40322 4.49103 4.60781 4.66171 4.77544 4.85648 4.92908 5.03444 5.10540 5.25349 5.31495 5.33721 5.43712 5.46006 5.57918 5.69392 5.71791 5.77340 5.83271 5.87852 5.94309 6.07365 6.11105 6.16028 6.21624 6.26781 6.27711 6.44487 6.52279 6.60146 6.67311 6.70871 6.85197 7.83634 7.93704 8.07629 8.27114 8.28919 8.92183 9.68792 10.03051 11.12567 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004882 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.878743 B = 5734.334962 C = 7009.444345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.368 5.368 3 N -0.004 5.004 4 N -0.229 5.229 5 C -0.026 4.026 6 C -0.017 4.017 7 C -0.145 4.145 8 C -0.042 4.042 9 C -0.117 4.117 10 C 0.584 3.416 11 O -0.525 6.525 12 N -0.622 5.622 13 C 0.095 3.905 14 C -0.108 4.108 15 H 0.093 0.907 16 C -0.118 4.118 17 C 0.131 3.869 18 N -0.596 5.596 19 C -0.262 4.262 20 H 0.085 0.915 21 C 0.029 3.971 22 N -0.897 5.897 23 Si 0.870 3.130 24 H -0.290 1.290 25 H -0.271 1.271 26 H -0.302 1.302 27 C 0.142 3.858 28 C 0.132 3.868 29 H 0.082 0.918 30 C 0.123 3.877 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.691 -12.893 -3.059 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 N 0.016 4.984 4 N -0.107 5.107 5 C -0.151 4.151 6 C -0.039 4.039 7 C -0.166 4.166 8 C -0.064 4.064 9 C -0.125 4.125 10 C 0.373 3.627 11 O -0.402 6.402 12 N -0.357 5.357 13 C -0.028 4.028 14 C -0.127 4.127 15 H 0.111 0.889 16 C -0.157 4.157 17 C 0.005 3.995 18 N -0.320 5.320 19 C -0.390 4.390 20 H 0.102 0.898 21 C -0.171 4.171 22 N -0.539 5.539 23 Si 0.699 3.301 24 H -0.218 1.218 25 H -0.196 1.196 26 H -0.230 1.230 27 C 0.015 3.985 28 C 0.029 3.971 29 H 0.100 0.900 30 C -0.002 4.002 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.143 -10.715 -3.580 18.101 hybrid contribution -0.803 -1.536 0.815 1.916 sum 13.340 -12.252 -2.765 18.323 Atomic orbital electron populations 1.22438 0.70051 1.06463 1.04941 1.50333 1.08961 1.02685 1.54024 1.81666 0.93895 1.08049 1.14788 1.74862 1.11764 1.09987 1.14099 1.19931 0.92859 0.90532 1.11793 1.20545 0.97438 0.91387 0.94561 1.20838 0.96769 0.94715 1.04324 1.21215 0.91246 0.99185 0.94770 1.18873 0.94564 0.89506 1.09510 1.17525 0.86604 0.79178 0.79348 1.90815 1.51742 1.59066 1.38580 1.49728 1.12383 1.34981 1.38590 1.23644 0.96778 0.94036 0.88325 1.22880 0.94438 1.00175 0.95246 0.88933 1.21859 1.00508 0.96707 0.96623 1.21162 0.91890 0.98165 0.88293 1.43840 1.74124 1.12732 1.01257 1.18840 1.31367 0.88177 1.00614 0.89766 1.25192 0.99148 0.95065 0.97676 1.69906 1.43909 1.06653 1.33399 0.87105 0.80019 0.80832 0.82104 1.21764 1.19638 1.23042 1.20283 0.91940 0.92985 0.93278 1.22468 0.87279 0.94319 0.93075 0.89985 1.18999 0.91131 0.89299 1.00747 0.89448 0.87202 0.88364 0.84230 0.84178 0.84502 0.89983 0.89754 0.91552 0.92196 0.90658 0.95620 0.92767 0.95548 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 9.75 59.85 0.58 2.50 16 2 N -0.37 -6.85 4.10 -65.27 -0.27 -7.12 16 3 N 0.00 -0.07 13.72 60.35 0.83 0.76 16 4 N -0.23 -4.00 12.40 32.15 0.40 -3.60 16 5 C -0.03 -0.41 7.26 -84.76 -0.62 -1.02 16 6 C -0.02 -0.19 10.09 -39.11 -0.39 -0.58 16 7 C -0.15 -1.28 9.98 -39.72 -0.40 -1.68 16 8 C -0.04 -0.44 8.96 -39.13 -0.35 -0.79 16 9 C -0.12 -1.74 5.62 -104.93 -0.59 -2.33 16 10 C 0.58 9.76 6.43 -12.47 -0.08 9.68 16 11 O -0.52 -10.47 13.27 5.29 0.07 -10.39 16 12 N -0.62 -8.95 3.34 -175.02 -0.58 -9.54 16 13 C 0.10 0.97 6.63 -3.00 -0.02 0.95 16 14 C -0.11 -1.33 4.39 -89.97 -0.40 -1.73 16 15 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.12 -1.84 5.66 -26.68 -0.15 -1.99 16 17 C 0.13 2.63 4.24 -3.93 -0.02 2.61 16 18 N -0.60 -13.28 2.77 -174.87 -0.48 -13.77 16 19 C -0.26 -6.96 9.92 -15.06 -0.15 -7.11 16 20 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 21 C 0.03 0.80 5.08 -17.43 -0.09 0.71 16 22 N -0.90 -26.46 13.97 55.49 0.78 -25.69 16 23 Si 0.87 21.44 24.60 -169.99 -4.18 17.26 16 24 H -0.29 -6.90 6.67 56.52 0.38 -6.52 16 25 H -0.27 -6.59 7.03 56.52 0.40 -6.19 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 27 C 0.14 2.69 6.22 -5.43 -0.03 2.66 16 28 C 0.13 1.91 4.22 -69.42 -0.29 1.62 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 C 0.12 2.09 6.81 -83.92 -0.57 1.52 16 31 H 0.09 1.61 7.67 -51.93 -0.40 1.21 16 32 H 0.11 2.38 6.42 -51.93 -0.33 2.04 16 33 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 1.06 7.42 -52.49 -0.39 0.67 16 37 H 0.08 0.81 7.97 -51.93 -0.41 0.40 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.72 4.45 -51.93 -0.23 1.49 16 42 H 0.03 0.50 7.61 -51.93 -0.40 0.11 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.69 6.41 -51.93 -0.33 1.36 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -32.95 357.17 -7.49 -40.43 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.86 Total: 1.26 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -3.56 Total: 5.03 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.66 Total: -58.97 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.18 Total: 17.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.95 -7.49 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084874852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.383 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds