Wall clock time and date at job start Wed Apr 1 2020 01:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40253 * 126.66661 * 2 1 4 4 N 1.28654 * 109.42416 * 179.97438 * 3 2 1 5 5 C 1.35403 * 110.10628 * 0.02562 * 4 3 2 6 6 C 1.40114 * 133.02911 * 180.02562 * 5 4 3 7 7 C 1.37604 * 120.15359 * 180.02562 * 6 5 4 8 8 C 1.38489 * 120.79840 * 359.97438 * 7 6 5 9 9 C 1.39209 * 120.27373 * 359.97438 * 8 7 6 10 10 C 1.47532 * 120.24419 * 179.97438 * 9 8 7 11 11 O 1.21588 * 119.99918 * 227.35384 * 10 9 8 12 12 N 1.34772 * 119.99718 * 47.35156 * 10 9 8 13 13 C 1.47811 * 135.01614 * 355.37530 * 12 10 9 14 14 C 1.54655 * 85.79087 * 153.78788 * 13 12 10 15 15 H 1.09002 * 115.01152 * 139.91821 * 14 13 12 16 16 C 1.53010 * 110.84023 * 270.23091 * 14 13 12 17 17 C 1.53097 * 109.44863 * 143.89311 * 16 14 13 18 18 N 1.46620 * 108.00864 * 301.02491 * 17 16 14 19 19 C 1.36937 * 119.89121 * 237.31844 * 18 17 16 20 20 H 1.07997 * 119.99428 * 153.93033 * 19 18 17 21 21 C 1.38812 * 120.00154 * 333.93948 * 19 18 17 22 22 N 1.31611 * 120.00040 * 152.81531 * 21 19 18 23 23 Si 1.86797 * 119.99765 * 332.81587 * 21 19 18 24 24 H 1.48505 * 109.47193 * 95.35302 * 23 21 19 25 25 H 1.48500 * 109.47516 * 335.34929 * 23 21 19 26 26 H 1.48503 * 109.46846 * 215.35043 * 23 21 19 27 27 C 1.45683 * 120.21716 * 57.59839 * 18 17 16 28 28 C 1.46827 * 135.01259 * 175.34941 * 12 10 9 29 29 H 1.09002 * 111.56088 * 94.50166 * 28 12 10 30 30 C 1.36979 * 126.65979 * 180.25477 * 2 1 3 31 31 H 1.08998 * 109.47298 * 98.07622 * 1 2 3 32 32 H 1.08998 * 109.47358 * 218.08260 * 1 2 3 33 33 H 1.09002 * 109.47084 * 338.07980 * 1 2 3 34 34 H 1.08007 * 119.92830 * 0.02562 * 6 5 4 35 35 H 1.08000 * 119.59800 * 179.97438 * 7 6 5 36 36 H 1.07994 * 119.85863 * 180.02562 * 8 7 6 37 37 H 1.08999 * 113.81597 * 39.57435 * 13 12 10 38 38 H 1.08995 * 113.82635 * 268.00574 * 13 12 10 39 39 H 1.09005 * 109.47284 * 23.90435 * 16 14 13 40 40 H 1.08996 * 109.47767 * 263.88869 * 16 14 13 41 41 H 1.08994 * 109.75673 * 181.39624 * 17 16 14 42 42 H 1.09005 * 109.79708 * 60.67470 * 17 16 14 43 43 H 0.96998 * 120.00264 * 179.97438 * 22 21 19 44 44 H 1.08998 * 108.71451 * 81.47348 * 27 18 17 45 45 H 1.09003 * 108.71409 * 199.49466 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5313 0.7436 0.0005 5 6 3.5989 -0.6087 0.0004 6 6 4.6696 -1.5124 0.0012 7 6 4.4304 -2.8675 0.0002 8 6 3.1357 -3.3590 -0.0011 9 6 2.0529 -2.4841 -0.0009 10 6 0.6739 -3.0083 -0.0029 11 8 -0.1472 -2.5565 -0.7775 12 7 0.3243 -3.9881 0.8540 13 6 1.0433 -4.8157 1.8454 14 6 -0.3200 -4.9343 2.5659 15 1 -0.5402 -5.9198 2.9762 16 6 -0.5020 -3.8001 3.5766 17 6 -1.9704 -3.3674 3.5983 18 7 -2.3347 -2.9318 2.2466 19 6 -2.8208 -1.6677 2.0447 20 1 -2.6990 -1.1894 1.0841 21 6 -3.4698 -1.0009 3.0747 22 7 -3.4649 0.3146 3.1131 23 14 -4.3502 -1.9709 4.4064 24 1 -3.4471 -2.1427 5.5727 25 1 -4.7335 -3.3041 3.8764 26 1 -5.5701 -1.2368 4.8289 27 6 -2.1869 -3.8416 1.1183 28 6 -0.9288 -4.6756 1.1900 29 1 -1.0442 -5.5986 0.6216 30 6 2.2829 -1.0988 -0.0049 31 1 -0.3634 -0.1444 -1.0174 32 1 -0.3634 -0.8089 0.6338 33 1 -0.3633 0.9534 0.3836 34 1 5.6852 -1.1447 0.0026 35 1 5.2625 -3.5561 0.0004 36 1 2.9654 -4.4254 -0.0015 37 1 1.7952 -4.2681 2.4134 38 1 1.4134 -5.7597 1.4454 39 1 0.1220 -2.9537 3.2893 40 1 -0.2105 -4.1465 4.5681 41 1 -2.1012 -2.5427 4.2989 42 1 -2.5983 -4.2070 3.8966 43 1 -3.9188 0.7806 3.8327 44 1 -3.0505 -4.5061 1.0895 45 1 -2.1675 -3.2575 0.1983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084874852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:37 Heat of formation + Delta-G solvation = 133.091423 kcal Electronic energy + Delta-G solvation = -31363.326261 eV Core-core repulsion = 27384.477945 eV Total energy + Delta-G solvation = -3978.848316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.25322 -41.88677 -39.53144 -38.25852 -37.27722 -35.61910 -33.96138 -32.76537 -32.32843 -31.37860 -30.31117 -28.76355 -28.49998 -25.69970 -25.48696 -24.83230 -23.69520 -23.19448 -22.76284 -21.06125 -19.52385 -19.10523 -18.52532 -18.26598 -17.60217 -17.35653 -17.16559 -16.87488 -16.75385 -16.39110 -15.59975 -15.55313 -15.35682 -14.90165 -14.74721 -14.54945 -14.37652 -14.26229 -14.00913 -13.86330 -13.51911 -13.47697 -13.13236 -13.01650 -12.89253 -12.82244 -12.65819 -12.53672 -12.31037 -12.29732 -12.04048 -11.77020 -11.63171 -11.40965 -11.29983 -10.68824 -10.61275 -10.03076 -9.64034 -9.36273 -8.91865 -8.18429 -5.42868 -0.77804 0.18752 0.88954 0.98900 1.27698 1.40427 1.49709 1.64775 1.89041 2.41051 2.56245 2.93236 3.00577 3.30475 3.38261 3.41745 3.44499 3.66244 3.77183 3.88807 4.07964 4.11860 4.14550 4.24143 4.30655 4.37651 4.47709 4.53240 4.57818 4.62063 4.64891 4.67797 4.78349 4.83452 4.86868 4.91319 5.03516 5.07753 5.17579 5.20369 5.22886 5.25006 5.38264 5.54832 5.67284 5.88512 6.11117 6.76497 6.80182 6.96168 7.13096 7.67800 8.01075 9.00897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004882 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.878743 B = 5734.334962 C = 7009.444345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.388 5.388 3 N -0.046 5.046 4 N -0.234 5.234 5 C -0.046 4.046 6 C -0.013 4.013 7 C -0.119 4.119 8 C -0.009 4.009 9 C -0.153 4.153 10 C 0.575 3.425 11 O -0.579 6.579 12 N -0.628 5.628 13 C 0.108 3.892 14 C -0.100 4.100 15 H 0.140 0.860 16 C -0.110 4.110 17 C 0.122 3.878 18 N -0.608 5.608 19 C -0.244 4.244 20 H 0.038 0.962 21 C -0.031 4.031 22 N -0.949 5.949 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.259 1.259 26 H -0.315 1.315 27 C 0.140 3.860 28 C 0.123 3.877 29 H 0.122 0.878 30 C 0.099 3.901 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.174 0.826 35 H 0.200 0.800 36 H 0.179 0.821 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.033 0.967 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.259 0.741 44 H 0.034 0.966 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.681 -19.069 -1.742 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.181 5.181 3 N -0.025 5.025 4 N -0.111 5.111 5 C -0.171 4.171 6 C -0.034 4.034 7 C -0.140 4.140 8 C -0.031 4.031 9 C -0.161 4.161 10 C 0.365 3.635 11 O -0.460 6.460 12 N -0.362 5.362 13 C -0.013 4.013 14 C -0.119 4.119 15 H 0.158 0.842 16 C -0.150 4.150 17 C -0.003 4.003 18 N -0.332 5.332 19 C -0.373 4.373 20 H 0.056 0.944 21 C -0.227 4.227 22 N -0.595 5.595 23 Si 0.769 3.231 24 H -0.200 1.200 25 H -0.184 1.184 26 H -0.244 1.244 27 C 0.014 3.986 28 C 0.020 3.980 29 H 0.139 0.861 30 C -0.025 4.025 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.191 0.809 35 H 0.217 0.783 36 H 0.196 0.804 37 H 0.107 0.893 38 H 0.157 0.843 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 18.185 -16.970 -2.229 24.973 hybrid contribution -1.891 0.254 0.329 1.936 sum 16.294 -16.716 -1.900 23.421 Atomic orbital electron populations 1.21870 0.71597 1.04233 1.03580 1.50194 1.08352 1.03846 1.55747 1.81618 0.94487 1.08590 1.17839 1.74736 1.11254 1.11646 1.13473 1.20538 0.93745 0.90045 1.12798 1.21148 0.97587 0.91757 0.92955 1.21510 0.97567 0.94367 1.00529 1.21833 0.90489 1.00462 0.90285 1.19022 0.95043 0.89070 1.12958 1.17926 0.87073 0.79342 0.79168 1.90783 1.53398 1.60750 1.41105 1.49933 1.13332 1.34701 1.38228 1.23972 0.95545 0.95305 0.86444 1.22875 0.95567 1.00559 0.92871 0.84248 1.21737 0.96141 0.97217 0.99860 1.21264 0.95565 0.97449 0.85978 1.43910 1.74232 1.11734 1.03351 1.18675 1.30121 0.89940 0.98601 0.94406 1.25800 1.00456 0.95728 1.00674 1.70058 1.45929 1.08533 1.34978 0.85954 0.78035 0.79310 0.79778 1.20034 1.18359 1.24414 1.20347 0.95371 0.92466 0.90436 1.22630 0.85112 0.94389 0.95879 0.86056 1.19589 0.91472 0.89985 1.01453 0.90117 0.90343 0.89646 0.80890 0.78345 0.80374 0.89252 0.84270 0.94775 0.88786 0.93992 0.93733 0.93208 0.94794 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.66 9.75 127.77 1.25 6.91 16 2 N -0.39 -15.99 4.10 -360.43 -1.48 -17.47 16 3 N -0.05 -1.89 13.72 37.02 0.51 -1.38 16 4 N -0.23 -8.49 12.40 -52.19 -0.65 -9.14 16 5 C -0.05 -1.39 7.26 39.58 0.29 -1.10 16 6 C -0.01 -0.22 10.09 22.58 0.23 0.01 16 7 C -0.12 -1.30 9.98 22.18 0.22 -1.08 16 8 C -0.01 -0.14 8.96 22.56 0.20 0.07 16 9 C -0.15 -4.38 5.62 -20.06 -0.11 -4.49 16 10 C 0.57 19.32 6.43 86.70 0.56 19.88 16 11 O -0.58 -24.96 13.27 -3.99 -0.05 -25.02 16 12 N -0.63 -16.52 3.34 -825.89 -2.76 -19.28 16 13 C 0.11 1.52 6.63 86.34 0.57 2.09 16 14 C -0.10 -1.92 4.39 -10.32 -0.05 -1.96 16 15 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 16 C -0.11 -3.14 5.66 30.63 0.17 -2.96 16 17 C 0.12 4.78 4.24 86.39 0.37 5.14 16 18 N -0.61 -27.91 2.77 -707.16 -1.96 -29.87 16 19 C -0.24 -13.97 9.92 84.03 0.83 -13.13 16 20 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 21 C -0.03 -1.85 5.08 84.86 0.43 -1.42 16 22 N -0.95 -60.41 13.97 21.65 0.30 -60.11 16 23 Si 0.94 46.13 24.60 68.60 1.69 47.81 16 24 H -0.27 -12.56 6.67 99.48 0.66 -11.89 16 25 H -0.26 -12.03 7.03 99.48 0.70 -11.33 16 26 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 27 C 0.14 5.38 6.22 85.92 0.53 5.91 16 28 C 0.12 3.20 4.22 43.85 0.19 3.38 16 29 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 30 C 0.10 3.47 6.81 39.41 0.27 3.74 16 31 H 0.08 3.52 7.67 -2.39 -0.02 3.50 16 32 H 0.08 3.92 6.42 -2.39 -0.02 3.90 16 33 H 0.08 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.20 0.07 8.06 -2.91 -0.02 0.04 16 36 H 0.18 1.32 7.42 -2.91 -0.02 1.29 16 37 H 0.09 1.21 7.97 -2.39 -0.02 1.19 16 38 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.03 1.18 7.69 -2.38 -0.02 1.16 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.91 4.45 -2.39 -0.01 1.90 16 42 H 0.04 1.59 7.61 -2.38 -0.02 1.57 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.04 1.85 6.41 -2.39 -0.02 1.84 16 Total: -1.00 -87.32 357.17 2.53 -84.80 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.98 Total: 8.69 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 5.95 Total: 20.97 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -6.03 Total: -137.25 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.69 Total: 47.81 kcal Total: -87.32 2.53 -84.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084874852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.889 kcal (2) G-P(sol) polarization free energy of solvation -87.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds