Wall clock time and date at job start Wed Apr 1 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36449 * 124.85471 * 2 1 4 4 C 1.34482 * 108.86083 * 180.02562 * 3 2 1 5 5 C 1.46690 * 106.32812 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.93764 * 179.97438 * 5 4 3 7 7 O 1.21627 * 119.99736 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00117 * 0.02734 * 6 5 4 9 9 C 1.46499 * 119.99812 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.41482 * 323.96826 * 9 8 6 11 11 C 1.54760 * 110.46339 * 201.35428 * 9 8 6 12 12 C 1.53382 * 101.47030 * 217.14321 * 11 9 8 13 13 C 1.52450 * 115.88855 * 252.94834 * 12 11 9 14 14 N 1.47259 * 87.72249 * 218.51626 * 13 12 11 15 15 C 1.36937 * 135.94465 * 206.21251 * 14 13 12 16 16 H 1.08002 * 120.00081 * 7.62076 * 15 14 13 17 17 C 1.38817 * 120.00130 * 187.62448 * 15 14 13 18 18 N 1.31617 * 120.00010 * 174.52272 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 354.52681 * 17 15 14 20 20 H 1.48498 * 109.46955 * 174.92933 * 19 17 15 21 21 H 1.48503 * 109.46765 * 294.92780 * 19 17 15 22 22 H 1.48499 * 109.47553 * 54.92869 * 19 17 15 23 23 C 1.47263 * 88.11453 * 26.46712 * 14 13 12 24 24 N 1.46035 * 106.82382 * 24.67469 * 12 11 9 25 25 C 1.37281 * 142.29231 * 163.80225 * 24 12 11 26 26 C 1.34516 * 106.92412 * 180.16932 * 25 24 12 27 27 N 1.33975 * 108.05068 * 359.95930 * 26 25 24 28 28 C 1.30852 * 109.35500 * 359.93912 * 27 26 25 29 29 C 1.34659 * 124.84991 * 180.33762 * 2 1 3 30 30 H 1.08992 * 109.47736 * 89.97287 * 1 2 3 31 31 H 1.08999 * 109.47389 * 209.97891 * 1 2 3 32 32 H 1.09010 * 109.46980 * 329.97247 * 1 2 3 33 33 H 1.08002 * 125.56575 * 0.02562 * 3 2 1 34 34 H 1.07999 * 126.83433 * 179.97438 * 4 3 2 35 35 H 0.96996 * 120.00149 * 359.97438 * 8 6 5 36 36 H 1.09000 * 111.02675 * 99.09584 * 11 9 8 37 37 H 1.08999 * 111.02491 * 335.18701 * 11 9 8 38 38 H 1.08998 * 113.50827 * 103.80174 * 13 12 11 39 39 H 1.09007 * 113.50970 * 333.23013 * 13 12 11 40 40 H 0.97002 * 119.99938 * 354.79889 * 18 17 15 41 41 H 1.09000 * 113.51054 * 88.24495 * 23 14 13 42 42 H 1.08992 * 113.51184 * 218.82099 * 23 14 13 43 43 H 1.07998 * 126.53878 * 0.18733 * 25 24 12 44 44 H 1.07999 * 125.97178 * 179.97438 * 26 25 24 45 45 H 1.08004 * 125.80363 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5461 -0.7177 -0.0003 6 6 4.7283 -1.5958 -0.0013 7 8 4.5884 -2.8040 -0.0014 8 7 5.9653 -1.0607 -0.0020 9 6 7.1413 -1.9343 -0.0023 10 1 6.9542 -2.8240 0.5988 11 6 8.3812 -1.1728 0.5249 12 6 9.4907 -1.7402 -0.3693 13 6 10.4571 -2.7090 0.3027 14 7 11.5349 -2.0889 -0.4862 15 6 12.7569 -2.4823 -0.9628 16 1 13.0644 -3.5139 -0.8746 17 6 13.6005 -1.5552 -1.5593 18 7 14.8162 -1.9080 -1.9198 19 14 13.0103 0.1930 -1.8503 20 1 14.1295 1.0111 -2.3825 21 1 11.8951 0.1822 -2.8308 22 1 12.5372 0.7756 -0.5689 23 6 10.7268 -0.8587 -0.5329 24 7 8.8487 -2.2048 -1.5960 25 6 9.1184 -2.5731 -2.8907 26 6 7.9430 -2.8974 -3.4586 27 7 6.9800 -2.7347 -2.5414 28 6 7.5139 -2.3213 -1.4206 29 6 2.2344 -1.1051 -0.0065 30 1 -0.3634 0.0005 -1.0275 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 1.8828 2.1373 0.0004 34 1 4.3981 1.4017 -0.0011 35 1 6.0769 -0.0971 -0.0022 36 1 8.5665 -1.4057 1.5734 37 1 8.2718 -0.0983 0.3780 38 1 10.2754 -3.7526 0.0460 39 1 10.5567 -2.5490 1.3764 40 1 15.1494 -2.7924 -1.7013 41 1 10.9004 -0.1921 0.3119 42 1 10.7722 -0.3448 -1.4930 43 1 10.0893 -2.5979 -3.3631 44 1 7.8005 -3.2309 -4.4758 45 1 1.8766 -2.1241 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092364053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:58 Heat of formation + Delta-G solvation = 170.450930 kcal Electronic energy + Delta-G solvation = -29390.288839 eV Core-core repulsion = 25413.060552 eV Total energy + Delta-G solvation = -3977.228286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31943 -41.41936 -39.07477 -38.81697 -35.61323 -33.49502 -32.98654 -32.03051 -30.59075 -29.38107 -28.47958 -27.62520 -26.76812 -25.84192 -24.38108 -22.57601 -21.85922 -21.03051 -20.55516 -19.82266 -19.78348 -18.93408 -18.17645 -17.61303 -16.39183 -16.34891 -15.75931 -15.71638 -15.03305 -14.66617 -14.63281 -14.38938 -14.28183 -14.01326 -13.75157 -13.45757 -13.38469 -13.35557 -13.25859 -12.86848 -12.79871 -12.61676 -12.43928 -12.24242 -12.09285 -11.99076 -11.27095 -11.02916 -10.70508 -10.55999 -9.84979 -9.61747 -9.52504 -9.29642 -9.16044 -9.07461 -8.97025 -8.85765 -8.55518 -7.96512 -7.37239 -6.42291 -3.39012 1.66484 2.19048 2.37893 2.53172 3.00969 3.26849 3.28642 3.31313 3.51749 3.58977 3.65360 4.01913 4.31949 4.41566 4.45706 4.46652 4.59196 4.62425 4.67925 4.73241 4.85908 4.93668 5.04522 5.22723 5.29319 5.32275 5.41001 5.52108 5.64472 5.66081 5.74103 5.87907 5.91232 5.92358 5.98307 6.10211 6.12065 6.33804 6.43715 6.51281 6.75850 6.83773 6.86105 6.93446 7.25056 7.49387 7.61034 8.10989 8.40865 8.55219 8.83197 9.33525 10.15107 11.07177 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002656 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.571680 B =10541.217493 C =10861.020006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.449 5.449 3 C -0.019 4.019 4 C -0.168 4.168 5 C -0.229 4.229 6 C 0.597 3.403 7 O -0.539 6.539 8 N -0.714 5.714 9 C 0.237 3.763 10 H 0.116 0.884 11 C -0.117 4.117 12 C 0.112 3.888 13 C 0.123 3.877 14 N -0.621 5.621 15 C -0.307 4.307 16 H 0.085 0.915 17 C -0.021 4.021 18 N -0.928 5.928 19 Si 1.066 2.934 20 H -0.292 1.292 21 H -0.293 1.293 22 H -0.286 1.286 23 C 0.098 3.902 24 N -0.437 5.437 25 C -0.002 4.002 26 C -0.043 4.043 27 N -0.464 5.464 28 C 0.161 3.839 29 C 0.074 3.926 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.303 8.063 6.851 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.125 5.125 3 C -0.146 4.146 4 C -0.193 4.193 5 C -0.239 4.239 6 C 0.386 3.614 7 O -0.416 6.416 8 N -0.365 5.365 9 C 0.129 3.871 10 H 0.134 0.866 11 C -0.156 4.156 12 C 0.025 3.975 13 C -0.004 4.004 14 N -0.349 5.349 15 C -0.433 4.433 16 H 0.103 0.897 17 C -0.220 4.220 18 N -0.569 5.569 19 Si 0.898 3.102 20 H -0.219 1.219 21 H -0.221 1.221 22 H -0.213 1.213 23 C -0.028 4.028 24 N -0.119 5.119 25 C -0.135 4.135 26 C -0.191 4.191 27 N -0.183 5.183 28 C -0.103 4.103 29 C -0.061 4.061 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.236 0.764 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.189 0.811 44 H 0.188 0.812 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -27.654 8.463 5.966 29.529 hybrid contribution 0.705 -0.880 0.531 1.246 sum -26.949 7.583 6.497 28.740 Atomic orbital electron populations 1.22115 0.76923 1.04623 1.03595 1.43614 1.06760 1.05955 1.56176 1.21726 0.90598 0.91253 1.10978 1.22045 0.96212 0.93237 1.07767 1.20321 0.92511 0.93262 1.17765 1.17308 0.82105 0.87061 0.74907 1.90796 1.86333 1.14613 1.49876 1.45645 1.04713 1.09716 1.76469 1.19847 0.84754 0.94511 0.87993 0.86636 1.22780 0.91185 1.01060 1.00608 1.22244 0.92943 0.99245 0.83078 1.22624 0.85624 0.96739 0.95413 1.46047 1.19148 1.09275 1.60417 1.20131 0.89831 0.96029 1.37323 0.89724 1.25706 0.93977 1.04020 0.98307 1.70904 1.15108 1.22570 1.48342 0.83777 0.74300 0.76000 0.76123 1.21856 1.22098 1.21322 1.23020 0.86575 0.92097 1.01093 1.45666 1.09339 1.47949 1.08919 1.22527 1.01379 1.06563 0.83036 1.22214 0.87896 1.09141 0.99840 1.69790 1.32530 1.17505 0.98474 1.24534 0.81908 1.06389 0.97448 1.21790 0.89824 0.91757 1.02699 0.90641 0.89574 0.89622 0.81698 0.83706 0.76397 0.87043 0.88582 0.92711 0.92140 0.92708 0.91545 0.91973 0.81107 0.81242 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.03 59.84 0.66 0.88 16 2 N -0.45 -3.33 3.09 -124.53 -0.38 -3.71 16 3 C -0.02 -0.14 11.34 -16.83 -0.19 -0.33 16 4 C -0.17 -1.53 10.56 -37.50 -0.40 -1.92 16 5 C -0.23 -2.69 6.29 -103.35 -0.65 -3.34 16 6 C 0.60 8.63 7.80 -12.59 -0.10 8.53 16 7 O -0.54 -9.80 16.62 5.25 0.09 -9.72 16 8 N -0.71 -8.88 5.15 -54.69 -0.28 -9.16 16 9 C 0.24 3.32 3.23 -67.68 -0.22 3.11 16 10 H 0.12 1.69 7.66 -51.93 -0.40 1.29 16 11 C -0.12 -1.38 6.24 -25.61 -0.16 -1.54 16 12 C 0.11 1.87 1.64 -133.41 -0.22 1.65 16 13 C 0.12 2.29 8.19 -7.91 -0.06 2.22 16 14 N -0.62 -14.45 3.70 -184.72 -0.68 -15.14 16 15 C -0.31 -8.55 11.08 -15.06 -0.17 -8.71 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 18 N -0.93 -28.63 13.70 55.49 0.76 -27.87 16 19 Si 1.07 25.81 25.17 -169.99 -4.28 21.53 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.81 6.49 56.52 0.37 -6.45 16 22 H -0.29 -6.30 6.18 56.52 0.35 -5.95 16 23 C 0.10 1.92 5.22 -7.78 -0.04 1.88 16 24 N -0.44 -8.11 3.41 -100.95 -0.34 -8.46 16 25 C 0.00 -0.03 12.03 -16.43 -0.20 -0.23 16 26 C -0.04 -0.79 11.86 -17.93 -0.21 -1.00 16 27 N -0.46 -9.23 11.25 -10.49 -0.12 -9.35 16 28 C 0.16 2.90 8.22 -154.57 -1.27 1.63 16 29 C 0.07 0.75 11.12 -16.84 -0.19 0.56 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.19 8.13 -51.93 -0.42 -0.24 16 32 H 0.09 0.13 8.13 -51.92 -0.42 -0.29 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.15 1.01 7.70 -52.49 -0.40 0.61 16 35 H 0.40 3.85 7.50 -40.82 -0.31 3.55 16 36 H 0.11 1.01 7.87 -51.93 -0.41 0.60 16 37 H 0.10 0.93 7.80 -51.93 -0.40 0.53 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.97 7.98 -51.93 -0.41 0.56 16 40 H 0.26 8.03 8.73 -40.82 -0.36 7.68 16 41 H 0.07 1.19 7.60 -51.93 -0.39 0.79 16 42 H 0.06 1.32 4.80 -51.93 -0.25 1.07 16 43 H 0.17 3.34 8.06 -52.49 -0.42 2.92 16 44 H 0.17 2.59 8.06 -52.49 -0.42 2.16 16 45 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -38.46 373.69 -9.14 -47.61 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.02 Total: 5.93 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.51 Total: 2.70 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.05 Total: -73.69 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.28 Total: 21.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.46 -9.14 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092364053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.059 kcal (2) G-P(sol) polarization free energy of solvation -38.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds