Wall clock time and date at job start Wed Apr 1 2020 01:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36449 * 124.85471 * 2 1 4 4 C 1.34482 * 108.86083 * 180.02562 * 3 2 1 5 5 C 1.46690 * 106.32812 * 359.97438 * 4 3 2 6 6 C 1.47269 * 126.93764 * 179.97438 * 5 4 3 7 7 O 1.21627 * 119.99736 * 180.02562 * 6 5 4 8 8 N 1.34778 * 120.00117 * 0.02734 * 6 5 4 9 9 C 1.46499 * 119.99812 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.41482 * 323.96826 * 9 8 6 11 11 C 1.54760 * 110.46339 * 201.35428 * 9 8 6 12 12 C 1.53382 * 101.47030 * 217.14321 * 11 9 8 13 13 C 1.52450 * 115.88855 * 252.94834 * 12 11 9 14 14 N 1.47259 * 87.72249 * 218.51626 * 13 12 11 15 15 C 1.36937 * 135.94465 * 206.21251 * 14 13 12 16 16 H 1.08002 * 120.00081 * 7.62076 * 15 14 13 17 17 C 1.38817 * 120.00130 * 187.62448 * 15 14 13 18 18 N 1.31617 * 120.00010 * 174.52272 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 354.52681 * 17 15 14 20 20 H 1.48498 * 109.46955 * 174.92933 * 19 17 15 21 21 H 1.48503 * 109.46765 * 294.92780 * 19 17 15 22 22 H 1.48499 * 109.47553 * 54.92869 * 19 17 15 23 23 C 1.47263 * 88.11453 * 26.46712 * 14 13 12 24 24 N 1.46035 * 106.82382 * 24.67469 * 12 11 9 25 25 C 1.37281 * 142.29231 * 163.80225 * 24 12 11 26 26 C 1.34516 * 106.92412 * 180.16932 * 25 24 12 27 27 N 1.33975 * 108.05068 * 359.95930 * 26 25 24 28 28 C 1.30852 * 109.35500 * 359.93912 * 27 26 25 29 29 C 1.34659 * 124.84991 * 180.33762 * 2 1 3 30 30 H 1.08992 * 109.47736 * 89.97287 * 1 2 3 31 31 H 1.08999 * 109.47389 * 209.97891 * 1 2 3 32 32 H 1.09010 * 109.46980 * 329.97247 * 1 2 3 33 33 H 1.08002 * 125.56575 * 0.02562 * 3 2 1 34 34 H 1.07999 * 126.83433 * 179.97438 * 4 3 2 35 35 H 0.96996 * 120.00149 * 359.97438 * 8 6 5 36 36 H 1.09000 * 111.02675 * 99.09584 * 11 9 8 37 37 H 1.08999 * 111.02491 * 335.18701 * 11 9 8 38 38 H 1.08998 * 113.50827 * 103.80174 * 13 12 11 39 39 H 1.09007 * 113.50970 * 333.23013 * 13 12 11 40 40 H 0.97002 * 119.99938 * 354.79889 * 18 17 15 41 41 H 1.09000 * 113.51054 * 88.24495 * 23 14 13 42 42 H 1.08992 * 113.51184 * 218.82099 * 23 14 13 43 43 H 1.07998 * 126.53878 * 0.18733 * 25 24 12 44 44 H 1.07999 * 125.97178 * 179.97438 * 26 25 24 45 45 H 1.08004 * 125.80363 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5375 0.7492 -0.0006 5 6 3.5461 -0.7177 -0.0003 6 6 4.7283 -1.5958 -0.0013 7 8 4.5884 -2.8040 -0.0014 8 7 5.9653 -1.0607 -0.0020 9 6 7.1413 -1.9343 -0.0023 10 1 6.9542 -2.8240 0.5988 11 6 8.3812 -1.1728 0.5249 12 6 9.4907 -1.7402 -0.3693 13 6 10.4571 -2.7090 0.3027 14 7 11.5349 -2.0889 -0.4862 15 6 12.7569 -2.4823 -0.9628 16 1 13.0644 -3.5139 -0.8746 17 6 13.6005 -1.5552 -1.5593 18 7 14.8162 -1.9080 -1.9198 19 14 13.0103 0.1930 -1.8503 20 1 14.1295 1.0111 -2.3825 21 1 11.8951 0.1822 -2.8308 22 1 12.5372 0.7756 -0.5689 23 6 10.7268 -0.8587 -0.5329 24 7 8.8487 -2.2048 -1.5960 25 6 9.1184 -2.5731 -2.8907 26 6 7.9430 -2.8974 -3.4586 27 7 6.9800 -2.7347 -2.5414 28 6 7.5139 -2.3213 -1.4206 29 6 2.2344 -1.1051 -0.0065 30 1 -0.3634 0.0005 -1.0275 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5143 33 1 1.8828 2.1373 0.0004 34 1 4.3981 1.4017 -0.0011 35 1 6.0769 -0.0971 -0.0022 36 1 8.5665 -1.4057 1.5734 37 1 8.2718 -0.0983 0.3780 38 1 10.2754 -3.7526 0.0460 39 1 10.5567 -2.5490 1.3764 40 1 15.1494 -2.7924 -1.7013 41 1 10.9004 -0.1921 0.3119 42 1 10.7722 -0.3448 -1.4930 43 1 10.0893 -2.5979 -3.3631 44 1 7.8005 -3.2309 -4.4758 45 1 1.8766 -2.1241 -0.0129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092364053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:57 Heat of formation + Delta-G solvation = 142.527626 kcal Electronic energy + Delta-G solvation = -29391.499684 eV Core-core repulsion = 25413.060552 eV Total energy + Delta-G solvation = -3978.439132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.70384 -42.04653 -40.42065 -40.03935 -36.87977 -35.01351 -34.00875 -33.48854 -31.81938 -30.14036 -29.97871 -28.98146 -27.49245 -27.35933 -25.68999 -23.55668 -23.13840 -22.77149 -21.40574 -21.01279 -20.61727 -20.38589 -19.60548 -18.86484 -17.85977 -17.52112 -16.67214 -16.39155 -16.26242 -16.09313 -15.98932 -15.69632 -15.59420 -15.20317 -15.14478 -14.90895 -14.63813 -14.41919 -14.15728 -13.85287 -13.80600 -13.57498 -13.31427 -13.23423 -12.99729 -12.92588 -12.78848 -12.48044 -12.43357 -12.15992 -11.40974 -11.29049 -11.12290 -10.95938 -10.93540 -10.45515 -10.28022 -9.46119 -9.40846 -9.33363 -9.22778 -8.67232 -5.54948 0.83193 0.98095 1.32776 1.43329 1.59410 1.62137 1.68053 1.92219 2.11860 2.46335 2.49843 2.60270 2.72595 2.95188 3.13334 3.19690 3.44763 3.68093 3.91718 4.02123 4.05547 4.13474 4.13759 4.20776 4.38499 4.43823 4.50220 4.50564 4.53987 4.56912 4.66043 4.66491 4.75550 4.78465 4.84229 4.93623 5.07319 5.07838 5.20747 5.39801 5.44046 5.83608 5.84560 5.87861 6.11070 6.13361 6.41035 6.61730 6.69490 7.12409 7.23903 7.41292 8.13920 8.84057 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002656 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.571680 B =10541.217493 C =10861.020006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.012 4.012 4 C -0.181 4.181 5 C -0.263 4.263 6 C 0.593 3.407 7 O -0.589 6.589 8 N -0.700 5.700 9 C 0.238 3.762 10 H 0.110 0.890 11 C -0.097 4.097 12 C 0.123 3.877 13 C 0.121 3.879 14 N -0.656 5.656 15 C -0.288 4.288 16 H 0.045 0.955 17 C -0.082 4.082 18 N -0.968 5.968 19 Si 1.106 2.894 20 H -0.306 1.306 21 H -0.284 1.284 22 H -0.241 1.241 23 C 0.094 3.906 24 N -0.447 5.447 25 C -0.030 4.030 26 C -0.038 4.038 27 N -0.501 5.501 28 C 0.165 3.835 29 C 0.063 3.937 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.201 0.799 34 H 0.164 0.836 35 H 0.417 0.583 36 H 0.152 0.848 37 H 0.130 0.870 38 H 0.034 0.966 39 H 0.103 0.897 40 H 0.246 0.754 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.157 0.843 44 H 0.191 0.809 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.771 11.564 9.008 34.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.119 5.119 3 C -0.138 4.138 4 C -0.205 4.205 5 C -0.273 4.273 6 C 0.384 3.616 7 O -0.470 6.470 8 N -0.351 5.351 9 C 0.129 3.871 10 H 0.128 0.872 11 C -0.136 4.136 12 C 0.036 3.964 13 C -0.004 4.004 14 N -0.384 5.384 15 C -0.416 4.416 16 H 0.063 0.937 17 C -0.274 4.274 18 N -0.613 5.613 19 Si 0.931 3.069 20 H -0.234 1.234 21 H -0.211 1.211 22 H -0.165 1.165 23 C -0.030 4.030 24 N -0.129 5.129 25 C -0.163 4.163 26 C -0.186 4.186 27 N -0.220 5.220 28 C -0.099 4.099 29 C -0.074 4.074 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.218 0.782 34 H 0.181 0.819 35 H 0.255 0.745 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.053 0.947 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.175 0.825 44 H 0.208 0.792 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -31.189 11.997 8.166 34.401 hybrid contribution 1.617 -2.106 -0.145 2.659 sum -29.573 9.891 8.021 32.198 Atomic orbital electron populations 1.22432 0.74440 1.06335 1.04716 1.43919 1.08298 1.05213 1.54444 1.22322 0.90156 0.92519 1.08838 1.22315 0.97847 0.91897 1.08418 1.20333 0.92076 0.94562 1.20344 1.17787 0.83226 0.86777 0.73833 1.90761 1.87051 1.16777 1.52391 1.45481 1.03727 1.10347 1.75593 1.19964 0.86363 0.95259 0.85502 0.87183 1.22958 0.86891 1.02423 1.01318 1.22268 0.93812 0.97472 0.82818 1.22922 0.84304 0.96082 0.97135 1.46040 1.18379 1.12170 1.61849 1.19877 0.91483 0.94269 1.35933 0.93716 1.27075 0.93661 1.07933 0.98702 1.71014 1.17120 1.21960 1.51208 0.83333 0.73718 0.71621 0.78180 1.23416 1.21137 1.16541 1.23292 0.86686 0.91443 1.01628 1.45894 1.09865 1.48087 1.09065 1.22482 1.01120 1.08510 0.84199 1.22592 0.87359 1.07960 1.00658 1.69816 1.33395 1.19111 0.99712 1.25380 0.81697 1.04464 0.98408 1.21891 0.90052 0.92676 1.02762 0.89768 0.88692 0.87237 0.78236 0.81891 0.74497 0.82970 0.85165 0.94735 0.87996 0.94498 0.87866 0.93411 0.82530 0.79179 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 11.03 127.77 1.41 1.61 16 2 N -0.44 -5.36 3.09 -547.91 -1.69 -7.05 16 3 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 4 C -0.18 -2.74 10.56 23.62 0.25 -2.49 16 5 C -0.26 -5.82 6.29 -19.04 -0.12 -5.94 16 6 C 0.59 16.53 7.80 86.62 0.68 17.21 16 7 O -0.59 -21.60 16.62 -4.12 -0.07 -21.67 16 8 N -0.70 -15.59 5.15 -445.18 -2.29 -17.88 16 9 C 0.24 6.03 3.23 45.15 0.15 6.17 16 10 H 0.11 2.99 7.66 -2.39 -0.02 2.97 16 11 C -0.10 -1.78 6.24 31.32 0.20 -1.58 16 12 C 0.12 3.72 1.64 3.93 0.01 3.72 16 13 C 0.12 4.23 8.19 83.46 0.68 4.91 16 14 N -0.66 -29.79 3.70 -738.32 -2.73 -32.52 16 15 C -0.29 -16.44 11.08 84.03 0.93 -15.51 16 16 H 0.04 2.83 8.06 -2.91 -0.02 2.80 16 17 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 18 N -0.97 -62.26 13.70 21.65 0.30 -61.97 16 19 Si 1.11 51.55 25.17 68.60 1.73 53.27 16 20 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 21 H -0.28 -12.66 6.49 99.48 0.65 -12.01 16 22 H -0.24 -9.38 6.18 99.48 0.61 -8.76 16 23 C 0.09 3.35 5.22 83.54 0.44 3.79 16 24 N -0.45 -16.10 3.41 -473.29 -1.62 -17.71 16 25 C -0.03 -1.17 12.03 82.99 1.00 -0.17 16 26 C -0.04 -1.42 11.86 83.51 0.99 -0.43 16 27 N -0.50 -19.84 11.25 -187.10 -2.11 -21.95 16 28 C 0.16 5.75 8.22 138.30 1.14 6.88 16 29 C 0.06 1.20 11.12 83.91 0.93 2.13 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.09 0.17 8.13 -2.39 -0.02 0.15 16 32 H 0.11 -0.12 8.13 -2.38 -0.02 -0.14 16 33 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.16 1.67 7.70 -2.91 -0.02 1.64 16 35 H 0.42 6.44 7.50 -92.71 -0.70 5.74 16 36 H 0.15 1.69 7.87 -2.39 -0.02 1.67 16 37 H 0.13 1.62 7.80 -2.39 -0.02 1.60 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 2.80 7.98 -2.38 -0.02 2.78 16 40 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16 41 H 0.10 3.01 7.60 -2.39 -0.02 3.00 16 42 H 0.05 1.88 4.80 -2.39 -0.01 1.86 16 43 H 0.16 6.44 8.06 -2.91 -0.02 6.42 16 44 H 0.19 5.84 8.06 -2.91 -0.02 5.82 16 45 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -90.65 373.69 1.74 -88.91 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.14 Total: 21.78 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 10.08 Total: 16.78 kcal Atomic # 7 Polarization: -148.94 SS G_CDS: -10.14 Total: -159.08 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.07 Total: -21.67 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.73 Total: 53.27 kcal Total: -90.65 1.74 -88.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092364053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.438 kcal (2) G-P(sol) polarization free energy of solvation -90.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds