Wall clock time and date at job start Wed Apr 1 2020 01:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36449 * 124.85414 * 2 1 4 4 C 1.34483 * 108.85562 * 179.97438 * 3 2 1 5 5 C 1.46689 * 106.33426 * 359.97438 * 4 3 2 6 6 C 1.47260 * 126.94139 * 180.02562 * 5 4 3 7 7 O 1.21630 * 119.99626 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00099 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00023 * 180.02562 * 8 6 5 10 10 H 1.09008 * 110.41299 * 36.03114 * 9 8 6 11 11 C 1.54760 * 110.47762 * 158.64511 * 9 8 6 12 12 C 1.53378 * 101.47140 * 94.55386 * 11 9 8 13 13 C 1.52442 * 115.89242 * 252.95460 * 12 11 9 14 14 N 1.47257 * 87.72593 * 218.51719 * 13 12 11 15 15 C 1.36944 * 135.94319 * 206.22963 * 14 13 12 16 16 H 1.07993 * 120.00274 * 6.37188 * 15 14 13 17 17 C 1.38818 * 119.99691 * 186.38291 * 15 14 13 18 18 N 1.31622 * 120.00111 * 354.89018 * 17 15 14 19 19 Si 1.86792 * 119.99807 * 174.62116 * 17 15 14 20 20 H 1.48506 * 109.47238 * 94.98420 * 19 17 15 21 21 H 1.48502 * 109.47125 * 214.98104 * 19 17 15 22 22 H 1.48504 * 109.47299 * 334.98310 * 19 17 15 23 23 C 1.47257 * 88.11131 * 26.47954 * 14 13 12 24 24 N 1.46044 * 106.82187 * 24.68563 * 12 11 9 25 25 C 1.37282 * 142.29099 * 163.78622 * 24 12 11 26 26 C 1.34520 * 106.92163 * 180.19200 * 25 24 12 27 27 N 1.33984 * 108.04737 * 359.95539 * 26 25 24 28 28 C 1.30853 * 109.35741 * 359.94242 * 27 26 25 29 29 C 1.34661 * 124.84629 * 180.27907 * 2 1 3 30 30 H 1.08995 * 109.46725 * 90.02387 * 1 2 3 31 31 H 1.08988 * 109.47250 * 210.03047 * 1 2 3 32 32 H 1.09003 * 109.46694 * 330.03242 * 1 2 3 33 33 H 1.07997 * 125.56855 * 359.97438 * 3 2 1 34 34 H 1.07998 * 126.83334 * 180.02562 * 4 3 2 35 35 H 0.96996 * 119.99926 * 359.97438 * 8 6 5 36 36 H 1.09003 * 111.01839 * 336.51169 * 11 9 8 37 37 H 1.09002 * 111.03282 * 212.60713 * 11 9 8 38 38 H 1.09007 * 113.50932 * 103.80127 * 13 12 11 39 39 H 1.08997 * 113.51415 * 333.23380 * 13 12 11 40 40 H 0.97000 * 120.00037 * 180.02562 * 18 17 15 41 41 H 1.09004 * 113.50980 * 88.23369 * 23 14 13 42 42 H 1.09000 * 113.51082 * 218.80688 * 23 14 13 43 43 H 1.07998 * 126.53905 * 0.16653 * 25 24 12 44 44 H 1.07998 * 125.97330 * 179.97438 * 26 25 24 45 45 H 1.08005 * 125.80293 * 0.05556 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2449 1.1197 0.0000 4 6 3.5376 0.7491 0.0006 5 6 3.5462 -0.7178 0.0016 6 6 4.7284 -1.5959 0.0030 7 8 4.5884 -2.8041 0.0033 8 7 5.9653 -1.0608 0.0040 9 6 7.1413 -1.9344 0.0048 10 1 6.9543 -2.8243 -0.5963 11 6 8.3816 -1.1733 -0.5221 12 6 9.0168 -0.6833 0.7851 13 6 8.8812 0.8075 1.0733 14 7 10.2536 0.7697 1.6058 15 6 10.9754 1.4919 2.5184 16 1 10.4895 2.2532 3.1105 17 6 12.3316 1.2454 2.6823 18 7 12.9029 0.2518 2.0350 19 14 13.3474 2.3284 3.8155 20 1 13.4320 1.6985 5.1577 21 1 14.7139 2.4861 3.2559 22 1 12.7041 3.6616 3.9341 23 6 10.5123 -0.3802 0.7230 24 7 8.5745 -1.5942 1.8375 25 6 8.8549 -1.9868 3.1227 26 6 7.9603 -2.9382 3.4455 27 7 7.1539 -3.1243 2.3918 28 6 7.5135 -2.3213 1.4232 29 6 2.2345 -1.1051 -0.0054 30 1 -0.3632 -0.0004 -1.0276 31 1 -0.3633 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.8830 2.1372 -0.0004 34 1 4.3982 1.4015 0.0011 35 1 6.0769 -0.0973 0.0034 36 1 8.0867 -0.3341 -1.1522 37 1 9.0543 -1.8440 -1.0565 38 1 8.1284 1.0379 1.8273 39 1 8.7799 1.4166 0.1751 40 1 13.8505 0.0793 2.1498 41 1 10.8575 -0.0961 -0.2712 42 1 11.1330 -1.1497 1.1820 43 1 9.6435 -1.6050 3.7541 44 1 7.9021 -3.4603 4.3891 45 1 1.8766 -2.1241 -0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092364054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:01 Heat of formation + Delta-G solvation = 165.080303 kcal Electronic energy + Delta-G solvation = -29591.334828 eV Core-core repulsion = 25613.873654 eV Total energy + Delta-G solvation = -3977.461174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13238 -41.33932 -38.97349 -38.45810 -35.43154 -33.30354 -32.83804 -31.72760 -30.48573 -29.29833 -28.25584 -27.47467 -26.72150 -25.09903 -24.49688 -22.66091 -21.69444 -21.26692 -20.43668 -19.76103 -19.65500 -18.59949 -18.06632 -16.91572 -16.36234 -15.89666 -15.66974 -15.29984 -14.78691 -14.68890 -14.56761 -14.25527 -14.07550 -13.92034 -13.50510 -13.33585 -13.28508 -13.26398 -12.97666 -12.79353 -12.52392 -12.34477 -12.16976 -12.09712 -11.88795 -11.60252 -11.32288 -10.96827 -10.68877 -10.22177 -10.05507 -9.76376 -9.69395 -9.36770 -9.09169 -8.99035 -8.80967 -8.77162 -8.48093 -7.82837 -7.11015 -5.95389 -3.28838 1.73417 2.27051 2.47546 2.64792 3.25595 3.30236 3.35568 3.37610 3.39576 3.67755 3.87715 4.18347 4.32794 4.38703 4.64547 4.70217 4.73353 4.77863 4.80634 4.93271 4.98884 5.07958 5.17309 5.31586 5.37942 5.56007 5.67272 5.73636 5.79359 5.85702 5.87527 5.97990 6.07224 6.15957 6.27371 6.29516 6.54518 6.60441 6.78155 6.83622 6.92064 7.00765 7.04693 7.29145 7.41297 7.67225 7.74701 7.77866 8.49766 8.71153 8.84808 9.51833 10.38835 11.22217 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.002875 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.827418 B = 9736.418817 C =10512.099598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.019 4.019 4 C -0.168 4.168 5 C -0.229 4.229 6 C 0.594 3.406 7 O -0.538 6.538 8 N -0.713 5.713 9 C 0.234 3.766 10 H 0.112 0.888 11 C -0.117 4.117 12 C 0.093 3.907 13 C 0.119 3.881 14 N -0.603 5.603 15 C -0.225 4.225 16 H 0.083 0.917 17 C -0.002 4.002 18 N -0.916 5.916 19 Si 0.913 3.087 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.280 1.280 23 C 0.163 3.837 24 N -0.427 5.427 25 C 0.005 3.995 26 C -0.050 4.050 27 N -0.466 5.466 28 C 0.156 3.844 29 C 0.073 3.927 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.257 0.743 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.039 1.021 -7.558 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.146 4.146 4 C -0.192 4.192 5 C -0.239 4.239 6 C 0.383 3.617 7 O -0.415 6.415 8 N -0.365 5.365 9 C 0.126 3.874 10 H 0.130 0.870 11 C -0.156 4.156 12 C 0.006 3.994 13 C -0.009 4.009 14 N -0.328 5.328 15 C -0.351 4.351 16 H 0.101 0.899 17 C -0.199 4.199 18 N -0.562 5.562 19 Si 0.743 3.257 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.036 3.964 24 N -0.108 5.108 25 C -0.129 4.129 26 C -0.198 4.198 27 N -0.185 5.185 28 C -0.108 4.108 29 C -0.062 4.062 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.183 0.817 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.188 0.812 44 H 0.185 0.815 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.642 -0.102 -7.367 22.862 hybrid contribution 1.502 1.802 0.930 2.524 sum -20.139 1.700 -6.437 21.211 Atomic orbital electron populations 1.22107 0.76970 1.04670 1.03470 1.43614 1.06728 1.05960 1.56248 1.21729 0.90591 0.91241 1.11005 1.22077 0.96266 0.93270 1.07557 1.20348 0.92540 0.93299 1.17742 1.17340 0.82137 0.87097 0.75117 1.90802 1.86338 1.14502 1.49879 1.45733 1.04719 1.09854 1.76218 1.19658 0.84994 0.94310 0.88403 0.86982 1.22738 0.95224 1.01484 0.96189 1.22531 1.01392 0.91219 0.84214 1.22654 0.90548 0.90302 0.97366 1.45577 1.08297 1.35478 1.43467 1.18883 0.90096 1.14479 1.11680 0.89932 1.24834 0.96299 0.98694 1.00089 1.69816 1.11279 1.29989 1.45091 0.86097 0.79779 0.79980 0.79881 1.21407 1.21454 1.20501 1.22258 0.88308 0.91151 0.94656 1.45678 1.25265 1.28967 1.10897 1.22492 1.03977 1.01049 0.85408 1.22181 0.96598 1.02079 0.98943 1.69783 1.26855 1.22570 0.99278 1.24459 0.91891 0.96174 0.98249 1.21781 0.89815 0.91727 1.02841 0.90695 0.89597 0.89637 0.81680 0.83636 0.76434 0.87646 0.87747 0.93528 0.92919 0.93350 0.93330 0.90496 0.81208 0.81489 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.03 59.85 0.66 0.94 16 2 N -0.45 -3.71 3.09 -124.53 -0.38 -4.10 16 3 C -0.02 -0.16 11.34 -16.82 -0.19 -0.36 16 4 C -0.17 -1.73 10.56 -37.50 -0.40 -2.13 16 5 C -0.23 -2.93 6.29 -103.35 -0.65 -3.58 16 6 C 0.59 9.19 7.80 -12.59 -0.10 9.10 16 7 O -0.54 -10.20 16.62 5.25 0.09 -10.12 16 8 N -0.71 -9.85 5.12 -54.69 -0.28 -10.13 16 9 C 0.23 3.54 3.23 -67.68 -0.22 3.32 16 10 H 0.11 1.72 7.66 -51.92 -0.40 1.32 16 11 C -0.12 -1.54 6.15 -25.61 -0.16 -1.70 16 12 C 0.09 1.64 1.64 -133.40 -0.22 1.42 16 13 C 0.12 2.21 8.18 -7.93 -0.06 2.14 16 14 N -0.60 -14.36 3.78 -184.76 -0.70 -15.06 16 15 C -0.22 -5.98 10.74 -15.05 -0.16 -6.14 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 18 N -0.92 -25.99 11.62 55.49 0.65 -25.34 16 19 Si 0.91 21.39 29.56 -169.99 -5.02 16.36 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.16 3.52 6.86 -7.79 -0.05 3.46 16 24 N -0.43 -8.30 3.42 -100.94 -0.34 -8.64 16 25 C 0.01 0.11 12.03 -16.43 -0.20 -0.09 16 26 C -0.05 -0.96 11.86 -17.93 -0.21 -1.17 16 27 N -0.47 -9.76 11.25 -10.49 -0.12 -9.87 16 28 C 0.16 2.97 8.22 -154.57 -1.27 1.70 16 29 C 0.07 0.80 11.12 -16.84 -0.19 0.61 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.26 8.13 -51.94 -0.42 -0.16 16 32 H 0.08 0.21 8.13 -51.93 -0.42 -0.21 16 33 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.26 7.69 -52.49 -0.40 0.86 16 35 H 0.40 4.67 7.69 -40.82 -0.31 4.35 16 36 H 0.11 1.08 7.75 -51.93 -0.40 0.68 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.05 0.86 7.98 -51.93 -0.41 0.45 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.93 7.34 -51.93 -0.38 1.55 16 43 H 0.17 3.49 8.06 -52.49 -0.42 3.06 16 44 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 45 H 0.17 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -36.50 381.65 -9.97 -46.47 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.09 Total: 7.29 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -3.51 Total: 7.38 kcal Atomic # 7 Polarization: -71.96 SS G_CDS: -1.18 Total: -73.15 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.50 -9.97 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092364054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.549 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds