Wall clock time and date at job start Wed Apr 1 2020 01:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36449 * 124.85414 * 2 1 4 4 C 1.34483 * 108.85562 * 179.97438 * 3 2 1 5 5 C 1.46689 * 106.33426 * 359.97438 * 4 3 2 6 6 C 1.47260 * 126.94139 * 180.02562 * 5 4 3 7 7 O 1.21630 * 119.99626 * 180.02562 * 6 5 4 8 8 N 1.34775 * 120.00099 * 0.02562 * 6 5 4 9 9 C 1.46497 * 120.00023 * 180.02562 * 8 6 5 10 10 H 1.09008 * 110.41299 * 36.03114 * 9 8 6 11 11 C 1.54760 * 110.47762 * 158.64511 * 9 8 6 12 12 C 1.53378 * 101.47140 * 94.55386 * 11 9 8 13 13 C 1.52442 * 115.89242 * 252.95460 * 12 11 9 14 14 N 1.47257 * 87.72593 * 218.51719 * 13 12 11 15 15 C 1.36944 * 135.94319 * 206.22963 * 14 13 12 16 16 H 1.07993 * 120.00274 * 6.37188 * 15 14 13 17 17 C 1.38818 * 119.99691 * 186.38291 * 15 14 13 18 18 N 1.31622 * 120.00111 * 354.89018 * 17 15 14 19 19 Si 1.86792 * 119.99807 * 174.62116 * 17 15 14 20 20 H 1.48506 * 109.47238 * 94.98420 * 19 17 15 21 21 H 1.48502 * 109.47125 * 214.98104 * 19 17 15 22 22 H 1.48504 * 109.47299 * 334.98310 * 19 17 15 23 23 C 1.47257 * 88.11131 * 26.47954 * 14 13 12 24 24 N 1.46044 * 106.82187 * 24.68563 * 12 11 9 25 25 C 1.37282 * 142.29099 * 163.78622 * 24 12 11 26 26 C 1.34520 * 106.92163 * 180.19200 * 25 24 12 27 27 N 1.33984 * 108.04737 * 359.95539 * 26 25 24 28 28 C 1.30853 * 109.35741 * 359.94242 * 27 26 25 29 29 C 1.34661 * 124.84629 * 180.27907 * 2 1 3 30 30 H 1.08995 * 109.46725 * 90.02387 * 1 2 3 31 31 H 1.08988 * 109.47250 * 210.03047 * 1 2 3 32 32 H 1.09003 * 109.46694 * 330.03242 * 1 2 3 33 33 H 1.07997 * 125.56855 * 359.97438 * 3 2 1 34 34 H 1.07998 * 126.83334 * 180.02562 * 4 3 2 35 35 H 0.96996 * 119.99926 * 359.97438 * 8 6 5 36 36 H 1.09003 * 111.01839 * 336.51169 * 11 9 8 37 37 H 1.09002 * 111.03282 * 212.60713 * 11 9 8 38 38 H 1.09007 * 113.50932 * 103.80127 * 13 12 11 39 39 H 1.08997 * 113.51415 * 333.23380 * 13 12 11 40 40 H 0.97000 * 120.00037 * 180.02562 * 18 17 15 41 41 H 1.09004 * 113.50980 * 88.23369 * 23 14 13 42 42 H 1.09000 * 113.51082 * 218.80688 * 23 14 13 43 43 H 1.07998 * 126.53905 * 0.16653 * 25 24 12 44 44 H 1.07998 * 125.97330 * 179.97438 * 26 25 24 45 45 H 1.08005 * 125.80293 * 0.05556 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2449 1.1197 0.0000 4 6 3.5376 0.7491 0.0006 5 6 3.5462 -0.7178 0.0016 6 6 4.7284 -1.5959 0.0030 7 8 4.5884 -2.8041 0.0033 8 7 5.9653 -1.0608 0.0040 9 6 7.1413 -1.9344 0.0048 10 1 6.9543 -2.8243 -0.5963 11 6 8.3816 -1.1733 -0.5221 12 6 9.0168 -0.6833 0.7851 13 6 8.8812 0.8075 1.0733 14 7 10.2536 0.7697 1.6058 15 6 10.9754 1.4919 2.5184 16 1 10.4895 2.2532 3.1105 17 6 12.3316 1.2454 2.6823 18 7 12.9029 0.2518 2.0350 19 14 13.3474 2.3284 3.8155 20 1 13.4320 1.6985 5.1577 21 1 14.7139 2.4861 3.2559 22 1 12.7041 3.6616 3.9341 23 6 10.5123 -0.3802 0.7230 24 7 8.5745 -1.5942 1.8375 25 6 8.8549 -1.9868 3.1227 26 6 7.9603 -2.9382 3.4455 27 7 7.1539 -3.1243 2.3918 28 6 7.5135 -2.3213 1.4232 29 6 2.2345 -1.1051 -0.0054 30 1 -0.3632 -0.0004 -1.0276 31 1 -0.3633 -0.8896 0.5142 32 1 -0.3633 0.8903 0.5134 33 1 1.8830 2.1372 -0.0004 34 1 4.3982 1.4015 0.0011 35 1 6.0769 -0.0973 0.0034 36 1 8.0867 -0.3341 -1.1522 37 1 9.0543 -1.8440 -1.0565 38 1 8.1284 1.0379 1.8273 39 1 8.7799 1.4166 0.1751 40 1 13.8505 0.0793 2.1498 41 1 10.8575 -0.0961 -0.2712 42 1 11.1330 -1.1497 1.1820 43 1 9.6435 -1.6050 3.7541 44 1 7.9021 -3.4603 4.3891 45 1 1.8766 -2.1241 -0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092364054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:00 Heat of formation + Delta-G solvation = 140.965409 kcal Electronic energy + Delta-G solvation = -29592.380529 eV Core-core repulsion = 25613.873654 eV Total energy + Delta-G solvation = -3978.506875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.61414 -42.05772 -40.26621 -39.91017 -36.80047 -34.75586 -33.81609 -33.31785 -31.81433 -30.07226 -29.87964 -28.92928 -27.51040 -26.71501 -25.93803 -23.77674 -23.08357 -22.87185 -21.34118 -21.03648 -20.59384 -20.13056 -18.90789 -18.74375 -17.63959 -17.20166 -16.73272 -16.37402 -16.25217 -16.00259 -15.90895 -15.57573 -15.42760 -15.10612 -14.94685 -14.83691 -14.41470 -14.32480 -13.87002 -13.77087 -13.71834 -13.26131 -13.22514 -13.19507 -13.06872 -12.98910 -12.88108 -12.84296 -12.32851 -11.93126 -11.70470 -11.52380 -11.03321 -10.96487 -10.86822 -10.39791 -10.26859 -9.47864 -9.36363 -9.24225 -9.01664 -7.99014 -5.31558 0.81536 1.03672 1.43457 1.43833 1.53093 1.57909 1.81543 1.91353 2.13211 2.40627 2.57404 2.62559 2.90431 3.19908 3.29865 3.34342 3.58740 3.74099 4.01070 4.05180 4.08972 4.13383 4.25590 4.33542 4.48006 4.50857 4.57767 4.62788 4.65126 4.70037 4.75514 4.78093 4.82948 4.85552 5.06525 5.09733 5.15566 5.19598 5.37806 5.44825 5.51790 5.81112 5.82312 5.90803 6.11490 6.21903 6.39760 6.66801 6.82293 7.18791 7.38726 7.52066 8.47289 9.18428 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.002875 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.827418 B = 9736.418817 C =10512.099598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.444 5.444 3 C -0.010 4.010 4 C -0.184 4.184 5 C -0.265 4.265 6 C 0.590 3.410 7 O -0.584 6.584 8 N -0.702 5.702 9 C 0.236 3.764 10 H 0.113 0.887 11 C -0.099 4.099 12 C 0.107 3.893 13 C 0.125 3.875 14 N -0.635 5.635 15 C -0.227 4.227 16 H 0.082 0.918 17 C -0.058 4.058 18 N -0.948 5.948 19 Si 0.974 3.026 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.267 1.267 23 C 0.163 3.837 24 N -0.436 5.436 25 C -0.022 4.022 26 C -0.043 4.043 27 N -0.502 5.502 28 C 0.158 3.842 29 C 0.067 3.933 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.159 0.841 35 H 0.413 0.587 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.033 0.967 43 H 0.156 0.844 44 H 0.191 0.809 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.488 3.104 -8.887 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.137 4.137 4 C -0.208 4.208 5 C -0.275 4.275 6 C 0.381 3.619 7 O -0.465 6.465 8 N -0.354 5.354 9 C 0.129 3.871 10 H 0.130 0.870 11 C -0.138 4.138 12 C 0.021 3.979 13 C -0.001 4.001 14 N -0.361 5.361 15 C -0.355 4.355 16 H 0.100 0.900 17 C -0.252 4.252 18 N -0.596 5.596 19 Si 0.802 3.198 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.192 1.192 23 C 0.037 3.963 24 N -0.117 5.117 25 C -0.156 4.156 26 C -0.191 4.191 27 N -0.222 5.222 28 C -0.106 4.106 29 C -0.070 4.070 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.217 0.783 34 H 0.176 0.824 35 H 0.250 0.750 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.173 0.827 44 H 0.208 0.792 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.138 2.038 -8.704 25.741 hybrid contribution 2.107 1.148 1.362 2.759 sum -22.031 3.186 -7.341 23.440 Atomic orbital electron populations 1.22442 0.74308 1.06183 1.04959 1.43928 1.08347 1.05146 1.54400 1.22292 0.90070 0.92559 1.08787 1.22301 0.97840 0.92075 1.08565 1.20345 0.92212 0.94439 1.20527 1.17815 0.83132 0.86883 0.74052 1.90767 1.86983 1.16485 1.52220 1.45611 1.03955 1.10283 1.75555 1.19764 0.86228 0.95050 0.86103 0.86967 1.22883 0.93862 1.02976 0.94112 1.22491 0.98676 0.90941 0.85784 1.22863 0.87563 0.91317 0.98332 1.45818 1.10364 1.36085 1.43804 1.19170 0.90508 1.13824 1.12026 0.89978 1.25558 0.97487 1.00064 1.02088 1.69983 1.10871 1.31652 1.47062 0.85139 0.77996 0.78864 0.77791 1.21781 1.21950 1.19189 1.22198 0.90300 0.89584 0.94227 1.45879 1.25523 1.29417 1.10874 1.22448 1.04514 1.02344 0.86308 1.22578 0.95590 1.01408 0.99528 1.69809 1.28044 1.23986 1.00370 1.25256 0.91135 0.94880 0.99309 1.21905 0.89867 0.92731 1.02538 0.89179 0.88807 0.87542 0.78270 0.82376 0.74975 0.83463 0.85874 0.94024 0.88822 0.94159 0.92222 0.94848 0.82676 0.79165 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.28 11.03 127.77 1.41 1.69 16 2 N -0.44 -6.14 3.09 -547.89 -1.69 -7.83 16 3 C -0.01 -0.14 11.34 83.12 0.94 0.80 16 4 C -0.18 -3.37 10.56 23.62 0.25 -3.12 16 5 C -0.26 -6.50 6.29 -19.04 -0.12 -6.62 16 6 C 0.59 17.96 7.80 86.62 0.68 18.63 16 7 O -0.58 -22.42 16.62 -4.13 -0.07 -22.49 16 8 N -0.70 -18.22 5.12 -445.18 -2.28 -20.50 16 9 C 0.24 6.80 3.23 45.15 0.15 6.94 16 10 H 0.11 3.31 7.66 -2.38 -0.02 3.29 16 11 C -0.10 -2.32 6.15 31.32 0.19 -2.12 16 12 C 0.11 3.63 1.64 3.92 0.01 3.64 16 13 C 0.12 4.39 8.18 83.45 0.68 5.07 16 14 N -0.63 -30.07 3.78 -738.44 -2.79 -32.87 16 15 C -0.23 -12.18 10.74 84.03 0.90 -11.28 16 16 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 17 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 18 N -0.95 -55.28 11.62 21.65 0.25 -55.03 16 19 Si 0.97 44.61 29.56 68.60 2.03 46.64 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.16 7.04 6.86 83.54 0.57 7.61 16 24 N -0.44 -16.96 3.42 -473.28 -1.62 -18.58 16 25 C -0.02 -0.91 12.03 82.99 1.00 0.09 16 26 C -0.04 -1.69 11.86 83.51 0.99 -0.70 16 27 N -0.50 -21.25 11.25 -187.09 -2.11 -23.36 16 28 C 0.16 5.99 8.22 138.30 1.14 7.13 16 29 C 0.07 1.37 11.12 83.92 0.93 2.30 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 0.32 8.13 -2.39 -0.02 0.30 16 32 H 0.11 0.09 8.13 -2.39 -0.02 0.07 16 33 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.16 2.30 7.69 -2.91 -0.02 2.27 16 35 H 0.41 8.53 7.69 -92.71 -0.71 7.81 16 36 H 0.15 2.26 7.75 -2.39 -0.02 2.24 16 37 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.09 2.63 7.98 -2.39 -0.02 2.61 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 42 H 0.03 1.73 7.34 -2.39 -0.02 1.71 16 43 H 0.16 6.79 8.06 -2.91 -0.02 6.77 16 44 H 0.19 6.18 8.06 -2.91 -0.02 6.15 16 45 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -83.08 381.65 2.22 -80.86 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.31 Total: 25.81 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 10.19 Total: 27.34 kcal Atomic # 7 Polarization: -147.93 SS G_CDS: -10.24 Total: -158.16 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -83.08 2.22 -80.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092364054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.829 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds